mRNA_H-elongata_contig68828.14520.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68828.14520.1
Unique NamemRNA_H-elongata_contig68828.14520.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68828.14520.1 vs. uniprot
Match: D7FM11_ECTSI (mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM11_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.780e-52
Identity = 95/144 (65.97%), Postives = 113/144 (78.47%), Query Frame = 1 
Query:    1 QLSCSTSSVSLVLRDIHEKAKPPLEEARMSGNMRKAREFLVFNLASKLVDYAERDHFSSDSFKMAFPLACVAVDLMAEHGQLSEFFLGKLYGRCPSAVPAVSFNTAGLSDAEVMSMFGMLEGDDLSTYLNRTKGLIAMMGAVMQ 432
            +LS + S+V  V RDI  KA+ PL +AR +G   KA+EFL FNLA KLVDY+ERDHFS DS++MAFPLACVAVDLM EH  LSE FLG LY RCPSAVPA+SF+TAGLSD EVM++ G    +DL T+LNRTKGL+ +M AVMQ
Sbjct:  650 KLSATPSTVRQVARDIQVKAEAPLADARRAGWEAKAKEFLFFNLADKLVDYSERDHFSGDSYRMAFPLACVAVDLMEEHAGLSELFLGTLYLRCPSAVPALSFDTAGLSDREVMALLGQTRDEDLPTFLNRTKGLVVLMAAVMQ 793
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68828.14520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM11_ECTSI1.780e-5265.97mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68828contigH-elongata_contig68828:1402..2395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue6.4e-46
Seed eggNOG ortholog2880.D7FM11
Preferred nameGLE1
KEGG koko:K18723
KEGG TC1.I.1
GOsGO:0000003,GO:0000822,GO:0003006,GO:0003341,GO:0003351,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006449,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007422,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0008289,GO:0009791,GO:0009799,GO:0009855,GO:0009889,GO:0009987,GO:0010001,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0012505,GO:0014009,GO:0014010,GO:0014037,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016973,GO:0019222,GO:0022008,GO:0022414,GO:0030154,GO:0030182,GO:0030234,GO:0031090,GO:0031224,GO:0031323,GO:0031326,GO:0031369,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034248,GO:0034399,GO:0034613,GO:0036094,GO:0042063,GO:0042802,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0045184,GO:0046907,GO:0048316,GO:0048468,GO:0048608,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051641,GO:0051649,GO:0060255,GO:0060287,GO:0061458,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0098772,GO:2000112
EggNOG free text desc.inositol hexakisphosphate binding
EggNOG OGsKOG2412@1,KOG2412@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGLE1-like
Ec32 orthologEc-01_010230.1
Exons3
Model size432
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68828.14520.1prot_H-elongata_contig68828.14520.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68828 1402..2395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931083.46231-CDS-H-elongata_contig68828:1401..15581622931083.46231-CDS-H-elongata_contig68828:1401..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68828 1402..1558 -
1691679691.12386-CDS-H-elongata_contig68828:1401..15581691679691.12386-CDS-H-elongata_contig68828:1401..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68828 1402..1558 -
1622931083.4799235-CDS-H-elongata_contig68828:1908..20421622931083.4799235-CDS-H-elongata_contig68828:1908..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68828 1909..2042 -
1691679691.1370287-CDS-H-elongata_contig68828:1908..20421691679691.1370287-CDS-H-elongata_contig68828:1908..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68828 1909..2042 -
1622931083.4917884-CDS-H-elongata_contig68828:2254..23951622931083.4917884-CDS-H-elongata_contig68828:2254..2395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68828 2255..2395 -
1691679691.1461086-CDS-H-elongata_contig68828:2254..23951691679691.1461086-CDS-H-elongata_contig68828:2254..2395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68828 2255..2395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68828.14520.1

>prot_H-elongata_contig68828.14520.1 ID=prot_H-elongata_contig68828.14520.1|Name=mRNA_H-elongata_contig68828.14520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
QLSCSTSSVSLVLRDIHEKAKPPLEEARMSGNMRKAREFLVFNLASKLVD
YAERDHFSSDSFKMAFPLACVAVDLMAEHGQLSEFFLGKLYGRCPSAVPA
VSFNTAGLSDAEVMSMFGMLEGDDLSTYLNRTKGLIAMMGAVMQ
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mRNA from alignment at H-elongata_contig68828:1402..2395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68828.14520.1 ID=mRNA_H-elongata_contig68828.14520.1|Name=mRNA_H-elongata_contig68828.14520.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=994bp|location=Sequence derived from alignment at H-elongata_contig68828:1402..2395- (Himanthalia elongata Himel1 dioecious)
CAGCTTTCCTGTTCGACGTCGAGCGTTTCGCTGGTGTTGCGAGACATCCA
TGAAAAAGCCAAGCCCCCCCTTGAGGAGGCAAGGATGTCTGGCAACATGA
GGAAAGCGCGGGAGTTCCTCGTCTTCAACCTCGCCTCCAAGGTACCCGCG
CGATGCAGCATCGCCAGATTCGAACTACCGAATCAAATATTAACATATGA
AATTACACTGAGACTCTAGGCGCCCACCAACAACAGCCTGCGTTACTGTT
GCGCCCCCCAAGCTCACTGCTGTAATCCGACCTTATCTTATCTTTGTGAC
CCCATCCCCACCCCCACTTCCAAACGACGCTCCGATATCGTCCTGAACCT
CAGCTCGTGGACTACGCCGAGCGCGACCACTTCAGCTCGGATTCTTTTAA
GATGGCTTTTCCCCTTGCGTGCGTGGCCGTGGACCTCATGGCAGAGCATG
GGCAACTTTCCGAGTTTTTCCTTGGAAAACTATACGGGTGAGTTTTCTTC
CACGAGTCAAGAGAAACCATAATCGTGCGACCACGAACATGATAGGGCGT
GGCGTTCAACCTATGACGGAGCACTGTTGTAGCTTTGCCAGTTATACGCT
CTGTATTATTAATAACACGTTGTAACGACTCTTGGAATGTTTATCGGGAT
ATCCAATATCTTGATATATTTTACCGCTTTGTGTGTTCATTACGCCGTTG
TGTTGTGTCTTGTCGAGAACTAGTAATAGTAATATTAATAGCTTGGATGC
TCCGTCATTGCGTATGTTCGCCATCAGAACTCCCGTCACCTTATTCTTCC
TCCACTAAAAAAATACGATCGAAATCGGAAACCGCAGGAGGTGCCCCTCG
GCCGTCCCCGCTGTGTCGTTCAATACTGCCGGCTTGAGCGACGCGGAGGT
AATGTCGATGTTCGGCATGCTAGAGGGGGATGATCTATCGACATACCTCA
ACCGCACGAAGGGCCTCATTGCTATGATGGGCGCAGTGATGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig68828:1402..2395-

>mRNA_H-elongata_contig68828.14520.1 ID=mRNA_H-elongata_contig68828.14520.1|Name=mRNA_H-elongata_contig68828.14520.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig68828:1402..2395- (Himanthalia elongata Himel1 dioecious)
CAGCTTTCCTGTTCGACGTCGAGCGTTTCGCTGGTGTTGCGAGACATCCA
TGAAAAAGCCAAGCCCCCCCTTGAGGAGGCAAGGATGTCTGGCAACATGA
GGAAAGCGCGGGAGTTCCTCGTCTTCAACCTCGCCTCCAAGCAGCTTTCC
TGTTCGACGTCGAGCGTTTCGCTGGTGTTGCGAGACATCCATGAAAAAGC
CAAGCCCCCCCTTGAGGAGGCAAGGATGTCTGGCAACATGAGGAAAGCGC
GGGAGTTCCTCGTCTTCAACCTCGCCTCCAAGCTCGTGGACTACGCCGAG
CGCGACCACTTCAGCTCGGATTCTTTTAAGATGGCTTTTCCCCTTGCGTG
CGTGGCCGTGGACCTCATGGCAGAGCATGGGCAACTTTCCGAGTTTTTCC
TTGGAAAACTATACGGCTCGTGGACTACGCCGAGCGCGACCACTTCAGCT
CGGATTCTTTTAAGATGGCTTTTCCCCTTGCGTGCGTGGCCGTGGACCTC
ATGGCAGAGCATGGGCAACTTTCCGAGTTTTTCCTTGGAAAACTATACGG
GAGGTGCCCCTCGGCCGTCCCCGCTGTGTCGTTCAATACTGCCGGCTTGA
GCGACGCGGAGGTAATGTCGATGTTCGGCATGCTAGAGGGGGATGATCTA
TCGACATACCTCAACCGCACGAAGGGCCTCATTGCTATGATGGGCGCAGT
GATGCAGGAGGTGCCCCTCGGCCGTCCCCGCTGTGTCGTTCAATACTGCC
GGCTTGAGCGACGCGGAGGTAATGTCGATGTTCGGCATGCTAGAGGGGGA
TGATCTATCGACATACCTCAACCGCACGAAGGGCCTCATTGCTATGATGG
GCGCAGTGATGCAG
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