mRNA_H-elongata_contig6877.14515.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6877.14515.1
Unique NamemRNA_H-elongata_contig6877.14515.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6877.14515.1 vs. uniprot
Match: D8LES1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES1_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 7.500e-11
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:  643 RPVLLERRKGASVGP-----VAIADLVVVPRIEFGQLTEDELESDLDEGETIWRIESKYLKGGG 819
            R  LL RR G   G      V +ADL+VVPRIEFGQ+T+DE+ SDLDEGETI RIESKYL+GGG
Sbjct: 1157 RQPLLGRRGGERGGAWGVPIVPVADLMVVPRIEFGQMTDDEMGSDLDEGETIGRIESKYLQGGG 1220
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BLAST of mRNA_H-elongata_contig6877.14515.1 vs. uniprot
Match: A0A6H5KM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM75_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.010e-10
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:  643 RPVLLERRKGAS-----VGPVAIADLVVVPRIEFGQLTEDELESDLDEGETIWRIESKYLKGGG 819
            R  LL RR+G       V  V  ADL+VVPRIEF Q+T+DE+ SDLDEGETI RIESKYL+GGG
Sbjct: 1178 RQPLLGRRRGEGGRTWGVPIVPAADLMVVPRIEFAQMTDDEMGSDLDEGETIGRIESKYLQGGG 1241
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6877.14515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LES1_ECTSI7.500e-1165.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM75_9PHAE7.010e-1064.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6877contigH-elongata_contig6877:382..2361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1495
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6877.14515.1prot_H-elongata_contig6877.14515.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6877 1010..1895 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931082.4253335-UTR-H-elongata_contig6877:381..10091622931082.4253335-UTR-H-elongata_contig6877:381..1009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6877 382..1009 -
1691679690.6379416-UTR-H-elongata_contig6877:381..10091691679690.6379416-UTR-H-elongata_contig6877:381..1009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6877 382..1009 -
1622931082.4892101-UTR-H-elongata_contig6877:1895..20481622931082.4892101-UTR-H-elongata_contig6877:1895..2048Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6877 1896..2048 -
1691679690.6684463-UTR-H-elongata_contig6877:1895..20481691679690.6684463-UTR-H-elongata_contig6877:1895..2048Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6877 1896..2048 -
1622931082.5155525-UTR-H-elongata_contig6877:2070..23611622931082.5155525-UTR-H-elongata_contig6877:2070..2361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6877 2071..2361 -
1691679690.6824381-UTR-H-elongata_contig6877:2070..23611691679690.6824381-UTR-H-elongata_contig6877:2070..2361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6877 2071..2361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931082.4409072-CDS-H-elongata_contig6877:1009..10991622931082.4409072-CDS-H-elongata_contig6877:1009..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6877 1010..1099 -
1691679690.6475902-CDS-H-elongata_contig6877:1009..10991691679690.6475902-CDS-H-elongata_contig6877:1009..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6877 1010..1099 -
1622931082.4658544-CDS-H-elongata_contig6877:1562..18951622931082.4658544-CDS-H-elongata_contig6877:1562..1895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6877 1563..1895 -
1691679690.65734-CDS-H-elongata_contig6877:1562..18951691679690.65734-CDS-H-elongata_contig6877:1562..1895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6877 1563..1895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6877.14515.1

>prot_H-elongata_contig6877.14515.1 ID=prot_H-elongata_contig6877.14515.1|Name=mRNA_H-elongata_contig6877.14515.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MAPKEENAGDGHGGKENRCKSGEARKHSASISEGTRDFDKANGDCESAAE
DEGRNGSDLRRHWPQMRPVLLERRKGASVGPVAIADLVVVPRIEFGQLTE
DELESDLDEGETIWRIESKYLKGGGVNRVSGRRGSIGSWR*
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mRNA from alignment at H-elongata_contig6877:382..2361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6877.14515.1 ID=mRNA_H-elongata_contig6877.14515.1|Name=mRNA_H-elongata_contig6877.14515.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1980bp|location=Sequence derived from alignment at H-elongata_contig6877:382..2361- (Himanthalia elongata Himel1 dioecious)
GGGTAATAGTACTTCTACTCCACCTTCCTCTGCCAGAAGCGCGGGCTCGG
AATCCGCGGAAGTCGGCGATCCCGCGTCGCGTGGAAGACGTACCAGTCGA
GATGAGGCTTCCGGAGCCGCAGAAAACCGAACAAGTGCATCGCCGCGGAA
TGCCAAACACACGACTGGGGTGCCTGTTAAACCCGACCTCGTTGATGCTC
CTAGTCAAGGCCAAACGACTCAGAGAGACCGTGCGGTCGACGCGTCAAGG
CGTTGGAATCGTGGCTACGATGTTAGAAGCGTGTCTTCAGGGTCGGAGGC
GGCCGAGGACGAGCTCGAGGCACCGTCGCTGGGGCGTCAGCTACCCGGGG
TCGATGCAGATCCCCCGCGTACCAACAGCGTTCGGGGCGCGGGACTGTCG
AGAGTTGCGCAGACAGCCGCCGTCGTCAAACTCTCGTCGCCATCGGAAGA
CGGCAAAGCACCGGGGATGGCTCCGAAGGAAGAGAACGCCGGCGATGGTC
ATGGAGGCAAGGAAAATCGCTGCAAATCGGGCGAAGCGCGTAAGCACTCC
GCCTCCATATCGGAAGGTACTCGCGATTTTGACAAAGCCAATGGAGATTG
TGAGAGTGCTGCGGAGGACGAGGGTCGCAATGGTAGTGACTTGCGACGGC
ATTGGCCGCAGATGCGGCCTGTTTTACTAGAACGGCGCAAAGGTGCATCG
GTGGGGCCGGTGGCAATTGCAGACCTGGTGGTTGTTCCTCGGATCGAATT
CGGGCAGCTGACTGAAGATGAGCTGGAGTCTGACCTCGACGAGGGCGAGG
TGCGAACCGTATGGGCCGTTGCACCCTCCGCTGCACGTAGAAACTTAATT
AGGCGTTATCCCAAGCGAGTTTTTGGGCTCTGTGCCAAGACTTGTGACTC
CCTGTGCTGAACTAGTGTACCGTCAGACTTGGTGGTAGGCGCATCGCGGG
GGGAGGGGGAGGGGAGCGCTTTACGTCCTTTTGCGATGACGAGACTTGGA
CACGCGTGTTTTGTTTTGTTTTGTTTTCAGAACGAGCTATTTTGCAGGAT
AGCGCGTCGCTTTTCCGCAAAGGCCTCTCGACTCGATTCGTTTCTCGTAG
AGCTATCCCGCCTTATCGATGTTATGTTTTCTAACGCCAAGCAACAATCT
CAAGCGCTTAAAATCGGAAGCCTCAAGCCCCACACTTCCACTCCGCATAT
TAATGCTTGGCCACTGTCCTCCTTTCCTCTGTGTACGCCTCTGTATACTC
GAACTCCCACAGACCATCTGGCGGATTGAGTCAAAGTACTTGAAGGGCGG
TGGGGTGAATCGGGTGTCTGGGCGTCGGGGATCCATAGGGAGCTGGAGAT
GATCGTTGCGTGCGTGCTTCAAGCGACGAACCCGTCTGTCAACAAGGGTC
CTGGTGCAGCCGCATACAGCTCGTTGTCTTGAGCTACAGCCCTTGCCGTT
ACCGGTTCTCATAGTTTTAAGCGAGGCACGGCAGGCGGCAAGCAGGCACA
TGAAAACCTGTTCCTTGAGAGAAGAGGGAGTTGGTGCGCGGCGATTTACC
CGCAACGCGAGGTAACCCGTTAAAAAATAATGGTGGTAACATCAATCTCC
TACGTAAACGTTACGCGCTGCTTTTACAAGTACGCAACACGGAATAAATC
ATCGGGTAAAAAGCGCAAATTCAAGTAGATGGCCCAATGCGACCGACCTG
TGGCATCATCACGATGGGGGGGGGAAGTAACGCGAACCGAACGCCTTCGA
GTGTATGGATCTATCTCCCCTTGTCTCATCAGATCCATGATGCCAACTTT
AGATCGGAAGGAAGGAGAGAAGCCGGTGGCGTGCTGAAGAGAGATTGTGT
ACCGCGGAGTGTCTAATAAGGTCTCCTATCAAAGAGAGCGTTTATCGGCA
ACAGTTGGTTTAATCCTTTATTTCGCTCAACGCACGTGAGACTAGACCGC
GTGTTCCTGTGAATTCGAAGAGAATAGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig6877:382..2361-

>mRNA_H-elongata_contig6877.14515.1 ID=mRNA_H-elongata_contig6877.14515.1|Name=mRNA_H-elongata_contig6877.14515.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig6877:382..2361- (Himanthalia elongata Himel1 dioecious)
ATGGCTCCGAAGGAAGAGAACGCCGGCGATGGTCATGGAGGCAAGGAAAA
TCGCTGCAAATCGGGCGAAGCGCGTAAGCACTCCGCCTCCATATCGGAAG
GTACTCGCGATTTTGACAAAGCCAATGGAGATTGTGAGAGTGCTGCGGAG
GACGAGGGTCGCAATGGTAGTGACTTGCGACGGCATTGGCCGCAGATGCG
GCCTGTTTTACTAGAACGGCGCAAAGGTGCATCGGTGGGGCCGGTGGCAA
TTGCAGACCTGGTGGTTGTTCCTCGGATCGAATTCGGGCAGCTGACTGAA
GATGAGCTGGAGTCTGACCTCGACGAGGGCGAGATGGCTCCGAAGGAAGA
GAACGCCGGCGATGGTCATGGAGGCAAGGAAAATCGCTGCAAATCGGGCG
AAGCGCGTAAGCACTCCGCCTCCATATCGGAAGGTACTCGCGATTTTGAC
AAAGCCAATGGAGATTGTGAGAGTGCTGCGGAGGACGAGGGTCGCAATGG
TAGTGACTTGCGACGGCATTGGCCGCAGATGCGGCCTGTTTTACTAGAAC
GGCGCAAAGGTGCATCGGTGGGGCCGGTGGCAATTGCAGACCTGGTGGTT
GTTCCTCGGATCGAATTCGGGCAGCTGACTGAAGATGAGCTGGAGTCTGA
CCTCGACGAGGGCGAGACCATCTGGCGGATTGAGTCAAAGTACTTGAAGG
GCGGTGGGGTGAATCGGGTGTCTGGGCGTCGGGGATCCATAGGGAGCTGG
AGATGAACCATCTGGCGGATTGAGTCAAAGTACTTGAAGGGCGGTGGGGT
GAATCGGGTGTCTGGGCGTCGGGGATCCATAGGGAGCTGGAGATGA
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