mRNA_H-elongata_contig68769.14514.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68769.14514.1
Unique NamemRNA_H-elongata_contig68769.14514.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68769.14514.1 vs. uniprot
Match: A0A388L1F8_CHABU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L1F8_CHABU)

HSP 1 Score: 60.1 bits (144), Expect = 7.040e-9
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    1 ARYELRGVLHHLGRNAFAGHYVTDVREVPSEVGRWKRHDDSVVSPVSESTALNGPARQTAYICFY 195
            + Y L G++ H+G     GH+V D+ +V     +W RHDDS+VSPVS+S+  +       Y+ FY
Sbjct:  589 SEYSLHGIISHIGAEVSCGHFVADILQVDQWRSQWYRHDDSLVSPVSDSSVFSMREFSECYLLFY 653
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BLAST of mRNA_H-elongata_contig68769.14514.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.390e-8
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 ARYELRGVLHHLGRNAFAGHYVTDVREVPSEVGR 102
            ARYELRG+LHHLGR+AFAGHYVTDVRE     GR
Sbjct: 1384 ARYELRGILHHLGRHAFAGHYVTDVREEGGGGGR 1417
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BLAST of mRNA_H-elongata_contig68769.14514.1 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.340e-8
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 ARYELRGVLHHLGRNAFAGHYVTDVRE 81
            ARYELRG+LHHLGR+AFAGHYVTDVRE
Sbjct:  202 ARYELRGILHHLGRHAFAGHYVTDVRE 228
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BLAST of mRNA_H-elongata_contig68769.14514.1 vs. uniprot
Match: K3WJV5_GLOUD (USP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJV5_GLOUD)

HSP 1 Score: 54.3 bits (129), Expect = 2.860e-7
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    7 YELRGVLHHLGRNAFAGHYVTDVREVPSEVGRWKRHDDSVVSPVSESTALNGP-ARQTAYICFY 195
            YEL+ V+HHLGR+   GHYV DVRE+     +W R +D+  S +SE  AL    ++++ Y+ FY
Sbjct:   85 YELKCVVHHLGRSIDEGHYVADVREMAD---KWVRRNDTHESVISEDYALQASRSQESCYMLFY 145
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BLAST of mRNA_H-elongata_contig68769.14514.1 vs. uniprot
Match: A0A833QDS3_9POAL (Ubiquitin carboxyl-terminal hydrolase 21-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QDS3_9POAL)

HSP 1 Score: 51.6 bits (122), Expect = 6.750e-6
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    7 YELRGVLHHLGRNAFAGHYVTDVREVPSEVGRWKRHDDSVVSPVSESTALNGPARQTAYICFY 195
            YEL G++ H G + + GHYV ++R  P+    W   DDS V+ +SES AL    +QTAYI FY
Sbjct:  294 YELYGIVEHRG-SFYYGHYVCNIRSSPTS---WHHFDDSQVTSISESDAL----QQTAYILFY 348
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68769.14514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A388L1F8_CHABU7.040e-938.46Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Char... [more]
D7G2P5_ECTSI3.390e-879.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KST6_9PHAE5.340e-892.59RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
K3WJV5_GLOUD2.860e-743.75USP domain-containing protein n=1 Tax=Globisporang... [more]
A0A833QDS3_9POAL6.750e-646.03Ubiquitin carboxyl-terminal hydrolase 21-like prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68769contigH-elongata_contig68769:816..1076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog2880.D7G2P5
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931082.355714-CDS-H-elongata_contig68769:815..9371622931082.355714-CDS-H-elongata_contig68769:815..937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68769 816..937 -
1691679690.6159494-CDS-H-elongata_contig68769:815..9371691679690.6159494-CDS-H-elongata_contig68769:815..937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68769 816..937 -
1622931082.3724375-CDS-H-elongata_contig68769:988..10761622931082.3724375-CDS-H-elongata_contig68769:988..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68769 989..1076 -
1691679690.6279895-CDS-H-elongata_contig68769:988..10761691679690.6279895-CDS-H-elongata_contig68769:988..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68769 989..1076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68769.14514.1prot_H-elongata_contig68769.14514.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68769 816..1076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68769.14514.1

>prot_H-elongata_contig68769.14514.1 ID=prot_H-elongata_contig68769.14514.1|Name=mRNA_H-elongata_contig68769.14514.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
ARYELRGVLHHLGRNAFAGHYVTDVREVPSEVGRWKRHDDSVVSPVSEST
ALNGPARQTAYICFYSLVK*
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mRNA from alignment at H-elongata_contig68769:816..1076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68769.14514.1 ID=mRNA_H-elongata_contig68769.14514.1|Name=mRNA_H-elongata_contig68769.14514.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig68769:816..1076- (Himanthalia elongata Himel1 dioecious)
GCTCGTTACGAGCTCCGAGGGGTTCTGCACCACCTCGGGCGGAACGCTTT
TGCAGGGCACTATGTTACCGACGTACGAGAGGTACCGTGTGGAGCGGGTG
AAAGCGAGTACCGTGGTGGGGAGGAGGAGGATGCGAAAGCGGAGGTCGGT
CGGTGGAAGCGCCACGACGACAGTGTTGTGTCGCCCGTTTCTGAATCGAC
CGCGCTAAACGGCCCCGCCCGTCAAACAGCCTACATATGTTTTTATTCGC
TCGTTAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig68769:816..1076-

>mRNA_H-elongata_contig68769.14514.1 ID=mRNA_H-elongata_contig68769.14514.1|Name=mRNA_H-elongata_contig68769.14514.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig68769:816..1076- (Himanthalia elongata Himel1 dioecious)
GCTCGTTACGAGCTCCGAGGGGTTCTGCACCACCTCGGGCGGAACGCTTT
TGCAGGGCACTATGTTACCGACGTACGAGAGGTACCGTGCTCGTTACGAG
CTCCGAGGGGTTCTGCACCACCTCGGGCGGAACGCTTTTGCAGGGCACTA
TGTTACCGACGTACGAGAGGTACCGTCGGAGGTCGGTCGGTGGAAGCGCC
ACGACGACAGTGTTGTGTCGCCCGTTTCTGAATCGACCGCGCTAAACGGC
CCCGCCCGTCAAACAGCCTACATATGTTTTTATTCGCTCGTTAAGTAGCG
GAGGTCGGTCGGTGGAAGCGCCACGACGACAGTGTTGTGTCGCCCGTTTC
TGAATCGACCGCGCTAAACGGCCCCGCCCGTCAAACAGCCTACATATGTT
TTTATTCGCTCGTTAAGTAG
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