mRNA_H-elongata_contig68762.14513.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68762.14513.1
Unique NamemRNA_H-elongata_contig68762.14513.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68762.14513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68762contigH-elongata_contig68762:1344..3279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size701
Cds size699
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68762.14513.1prot_H-elongata_contig68762.14513.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68762 1345..3279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931082.2456791-CDS-H-elongata_contig68762:1344..14251622931082.2456791-CDS-H-elongata_contig68762:1344..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68762 1345..1425 -
1691679690.575762-CDS-H-elongata_contig68762:1344..14251691679690.575762-CDS-H-elongata_contig68762:1344..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68762 1345..1425 -
1622931082.2647338-CDS-H-elongata_contig68762:1896..20981622931082.2647338-CDS-H-elongata_contig68762:1896..2098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68762 1897..2098 -
1691679690.5858023-CDS-H-elongata_contig68762:1896..20981691679690.5858023-CDS-H-elongata_contig68762:1896..2098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68762 1897..2098 -
1622931082.2839909-CDS-H-elongata_contig68762:2338..25471622931082.2839909-CDS-H-elongata_contig68762:2338..2547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68762 2339..2547 -
1691679690.5976799-CDS-H-elongata_contig68762:2338..25471691679690.5976799-CDS-H-elongata_contig68762:2338..2547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68762 2339..2547 -
1622931082.2989528-CDS-H-elongata_contig68762:3072..32791622931082.2989528-CDS-H-elongata_contig68762:3072..3279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68762 3073..3279 -
1691679690.6062255-CDS-H-elongata_contig68762:3072..32791691679690.6062255-CDS-H-elongata_contig68762:3072..3279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68762 3073..3279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68762.14513.1

>prot_H-elongata_contig68762.14513.1 ID=prot_H-elongata_contig68762.14513.1|Name=mRNA_H-elongata_contig68762.14513.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp
PPDPDDGFTAVDEGAVCRGPKINRKIDGPRQVQHGAETAGRLRPSAGKGC
LVALRESSPRSARNIERDLKGKSSFSHESPRNPSRPKGFPVLDVEERIKK
KRLMQIASAASEEGREDLIMGKSKRRRPPHGAEVGDDQRLCLGAWPKLPG
GDSPLTKKSRRSLEMDAHGMEDARDIDDVDVDDVPGPVKSRSSGNAGSAS
VGRGMEVIGETPCKPHRERGIPSSSVYSSSLSS
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mRNA from alignment at H-elongata_contig68762:1344..3279-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68762.14513.1 ID=mRNA_H-elongata_contig68762.14513.1|Name=mRNA_H-elongata_contig68762.14513.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1936bp|location=Sequence derived from alignment at H-elongata_contig68762:1344..3279- (Himanthalia elongata Himel1 dioecious)
CCTCCTGATCCTGACGATGGATTTACGGCAGTCGATGAGGGAGCCGTTTG
TCGTGGGCCGAAGATAAATCGCAAGATAGATGGTCCTCGGCAGGTGCAGC
ACGGCGCGGAGACGGCGGGTAGGCTTAGACCATCGGCGGGCAAGGGCTGC
CTAGTGGCGTTGAGGGAGTCCTCGCCGCGGTCAGCGAGGAACATAGAACG
GGATCTGGTGAGAACGCTCCCGCATACAGCAAACCAGCGATAGTACGTGT
CTTGTGGGTGATGACGTCATATTTCGTTAGGGTTAGGATTAGAGTTAGGC
ATGTCCCCCGTGAAATATTGTCGTAAGGAGAACTCCAAAAGTACTAGTAT
TAGTATTAAACAGTATTTTAAACAGTAATAGTATATCATAAATAGTGTTT
CTGACGTTAAGAGAAAAATAAAAATCTGCTCCGAGTAGCAACAGTGGCCG
CACTAGCAGCAGCCGATATTTCCCGTGTTGTCTTGTGATCTTAACGTTTT
CACAAACAGGCGCAGACAGAGGAGACGGGGTTGTAGGATAGTACCCAAAC
CACGCCATGCGTAGCACACAATCGAAGCAGCTCCGTGCCCGTTTCGAATC
ACCCGTTAACTCCACTCGAATGAATTTTGATTCTGTATGCGGAGCTACTC
TCCCCATCTCACGATTTTTGAGGCCGTATCACGATTTTCGTGTTTGTTAT
TTTTTCACCCGAATCGTGCCGGCGAAGCGCAGAAGGGCAAGAGCTCATTT
TCCCACGAGTCCCCGAGAAACCCTAGCCGACCGAAGGGTTTTCCTGTGCT
TGATGTGGAGGAACGAATCAAGAAAAAGCGTTTAATGCAAATTGCTTCGG
CAGCGTCAGAGGAAGGACGAGAAGACCTCATCATGGGCAAGAGCAAGAGA
AGAAGGCCGCCCCACGGGGCTGAGGTTGGGGATGACCAGAGGTGCGAGGA
TCCGCCGCTCGAGCAAATTAATGCACGGTACACGGTATACATCCTAGCCG
ATCTGCTACAATCGTGATGCTGGCCACGTTTTGGTGCTGGGCCTCCCTCC
GTTAGGGTTAGAGTTAGGGTTAGGGACTGCACGCGTAGCTATGCTGAATT
TGTGGCATATTTTCATGAGAGAACAGGACGTGGCGGTTTTAGTTGCTTTT
GTCTTGCCTCCTCTTTGCCCCGCTCCCCAAGGCTGTGCCTAGGGGCGTGG
CCGAAGCTACCGGGAGGAGATTCACCCTTAACAAAGAAGTCCAGGAGGAG
TCTTGAGATGGATGCGCATGGGATGGAGGACGCTAGAGATATTGACGATG
TCGACGTCGACGATGTACCCGGCCCAGTCAAAAGTCGGAGTTCAGGCAAC
GCCGGCAGCGCATCGGTGGGGCGTGGTATGGAGGTGACACCTGTGACACA
TGTGCCCAGTAAGAAGGTACCGTCTTGTTTGACGGTGCTCGTTGAGTCAG
GAGCTAAGCCACCACGGTCTCGCCGAAGTATCTTGGGGTTTGTGTTAGTG
TTAACGGCTGGCGCAATAAAGTGCCCATGGGTCCCATGGGTTAGGGTTTT
GATATGGCCTGGAGCTGCTTCTTGGGCGACGTATGATTAGCTTCTTCATC
CCGTGCGCACTGTATGATTAGTCATTCTCCGATACGGCAAATGATTGGTC
TCTCCTTCATGCGCTCACCCTTCGATGGGTATTTAGTTTTCTCCGTCGCG
ACACATAATTGGCCACTCCCTCGCGTGCGGCACATGATTGATCCTCTCCC
ATTTCTCCACCTCCAATTTCACTTATGCCTTCCCTTTGCATGATGCCTAC
CGGCAATGTGGTATGTGGAATATGGTGTGTGGTATGATCGGAAACACGTG
AAAGGTGATAGGCGAGACGCCGTGTAAACCGCATCGTGAGCGAGGCATAC
CATCAAGCTCGGTATATTCCTCTTCATTGTCTTCTA
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Coding sequence (CDS) from alignment at H-elongata_contig68762:1344..3279-

>mRNA_H-elongata_contig68762.14513.1 ID=mRNA_H-elongata_contig68762.14513.1|Name=mRNA_H-elongata_contig68762.14513.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig68762:1344..3279- (Himanthalia elongata Himel1 dioecious)
CCTCCTGATCCTGACGATGGATTTACGGCAGTCGATGAGGGAGCCGTTTG
TCGTGGGCCGAAGATAAATCGCAAGATAGATGGTCCTCGGCAGGTGCAGC
ACGGCGCGGAGACGGCGGGTAGGCTTAGACCATCGGCGGGCAAGGGCTGC
CTAGTGGCGTTGAGGGAGTCCTCGCCGCGGTCAGCGAGGAACATAGAACG
GGATCTGCCTCCTGATCCTGACGATGGATTTACGGCAGTCGATGAGGGAG
CCGTTTGTCGTGGGCCGAAGATAAATCGCAAGATAGATGGTCCTCGGCAG
GTGCAGCACGGCGCGGAGACGGCGGGTAGGCTTAGACCATCGGCGGGCAA
GGGCTGCCTAGTGGCGTTGAGGGAGTCCTCGCCGCGGTCAGCGAGGAACA
TAGAACGGGATCTGAAGGGCAAGAGCTCATTTTCCCACGAGTCCCCGAGA
AACCCTAGCCGACCGAAGGGTTTTCCTGTGCTTGATGTGGAGGAACGAAT
CAAGAAAAAGCGTTTAATGCAAATTGCTTCGGCAGCGTCAGAGGAAGGAC
GAGAAGACCTCATCATGGGCAAGAGCAAGAGAAGAAGGCCGCCCCACGGG
GCTGAGGTTGGGGATGACCAGAGAAGGGCAAGAGCTCATTTTCCCACGAG
TCCCCGAGAAACCCTAGCCGACCGAAGGGTTTTCCTGTGCTTGATGTGGA
GGAACGAATCAAGAAAAAGCGTTTAATGCAAATTGCTTCGGCAGCGTCAG
AGGAAGGACGAGAAGACCTCATCATGGGCAAGAGCAAGAGAAGAAGGCCG
CCCCACGGGGCTGAGGTTGGGGATGACCAGAGGCTGTGCCTAGGGGCGTG
GCCGAAGCTACCGGGAGGAGATTCACCCTTAACAAAGAAGTCCAGGAGGA
GTCTTGAGATGGATGCGCATGGGATGGAGGACGCTAGAGATATTGACGAT
GTCGACGTCGACGATGTACCCGGCCCAGTCAAAAGTCGGAGTTCAGGCAA
CGCCGGCAGCGCATCGGTGGGGCGTGGTATGGAGGCTGTGCCTAGGGGCG
TGGCCGAAGCTACCGGGAGGAGATTCACCCTTAACAAAGAAGTCCAGGAG
GAGTCTTGAGATGGATGCGCATGGGATGGAGGACGCTAGAGATATTGACG
ATGTCGACGTCGACGATGTACCCGGCCCAGTCAAAAGTCGGAGTTCAGGC
AACGCCGGCAGCGCATCGGTGGGGCGTGGTATGGAGGTGATAGGCGAGAC
GCCGTGTAAACCGCATCGTGAGCGAGGCATACCATCAAGCTCGGTATATT
CCTCTTCATTGTCTTCTGTGATAGGCGAGACGCCGTGTAAACCGCATCGT
GAGCGAGGCATACCATCAAGCTCGGTATATTCCTCTTCATTGTCTTCT
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