mRNA_H-elongata_contig6876.14512.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A6H5L2J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J7_9PHAE) HSP 1 Score: 223 bits (569), Expect = 2.670e-62 Identity = 171/298 (57.38%), Postives = 194/298 (65.10%), Query Frame = 1
Query: 85 IQGCYSGHGKATFRSGNSYIGEFRRGAMDGRGRYIWKSNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRYVXXXXXXXXXXXXXXXXXNGRTFEGRFKDDFMVGKMCQDEERPELSSSVKLNISDIVRCGHEVDATAIVREVE 978
+ YSG G+A FRSGN Y GEFRRG MDGRG Y W S+GT+ XXX++G G QRYGVGT VSS+ XXXXXXXXXXXXXX ASGN YEG WVEDHK G G M W RRER XXXXXXXXXXXX E+RP + +++DTQKQMCNVYRG+WL GMRHGQGTF+YAD SR+ XXXXXXXXXXXXXXXXXNGRTFEG F DD M+GK+ QD+E PELS++VKL I+DI+ G EV A VR+VE
Sbjct: 12 LSSSYSGQGEALFRSGNKYSGEFRRGVMDGRGCYTWISDGTVXXXXXXXXXXXXXXXXXXSDGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQRYGVGTKDVSSYXXXXXXXXXXXXXXXXXASGNVYEGEWVEDHKEGMGVMNWKERRERYTXXXXXXXXXXXXEHVWIEERPVSAVSMDTQKQMCNVYRGEWLDGMRHGQGTFMYADGSRHTXXXXXXXXXXXXXXXXXNGRTFEGLFDDDVMLGKVGQDDEHPELSAAVKLKIADILSSGTEVARAAAVRDVE 309
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: D7FIY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY9_ECTSI) HSP 1 Score: 173 bits (439), Expect = 1.070e-44 Identity = 152/276 (55.07%), Postives = 173/276 (62.68%), Query Frame = 1
Query: 85 IQGCYSGHGKATFRSGNSYIGEFRRGAMDGRGRYIWKSNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRYVXXXXXXXXXXXXXXXXXNGRTFEGRFKDDFMVGKMCQDEERPELSSSVKL 912
+ YSG G+A FRSGN Y GEFRRG MDGRG Y W S+GT+ XXX++G + G QRYGV T VSS+ XXXXXXXXXXXX TYASGN YE HK G G M WV RRER XXXXXXXXXXXXXXXXX +RP + +++DTQKQMCNVYRG+WL GMRHGQGTF+YAD SR+ XXXXXXXXXXXXXXXXX GRTFEG F DD M+GK+ Q ++S +KL
Sbjct: 12 LSSSYSGQGEALFRSGNKYSGEFRRGVMDGRGCYTWISDGTVXXXXXXXXXXXXXXXXXXSDGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGEQRYGVSTKEVSSYXXXXXXXXXXXXXTMTYASGNVYEXXXXXXHKEGMGVMNWVERRERYTXXXXXXXXXXXXXXXXXXERPVSAVSMDTQKQMCNVYRGEWLDGMRHGQGTFMYADGSRHTXXXXXXXXXXXXXXXXXXGRTFEGLFDDDAMLGKVGQ------INSDLKL 281
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: D0NR05_PHYIT (Radial spoke head 10 family protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NR05_PHYIT) HSP 1 Score: 111 bits (277), Expect = 2.550e-23 Identity = 112/323 (34.67%), Postives = 152/323 (47.06%), Query Frame = 1
Query: 31 LGPELGSLIVDEYVGDT-DIQGC----YSGHGKATFRSGNSYIGEFRRGAMDGRGRYIWKSNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSAD------------------------------GTLV------YEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPET------PLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRYVXXXXXXXXXXXXXXXXXNGRTFEGRFKDDFMV 858
L P + + +V Y G+T + C Y G G+ F++G +Y G+F G M G G W ++G +YEG+F++NE+ GIG NG SY G V G R+G G+F + D G +V Y+G W++ HGYG + + + XXXXXXXXXX YA G+ Y G W D K+G+G MTW+ R D E + + N Y G++ G+RHG+G F YA+ +R XXXXXXXXXXXXXXXXX R F G F+ D V
Sbjct: 6 LDPRVLANVVTSYDGETLQVPDCDVPVYHGKGRLEFKTGFTYTGDFVHGRMHGTGHIEWLTSGVVYEGEFARNEITGIGTYWWPNGSSYVGDVKCGKRHGHGVFVTGDHVPKPLLFAFHSPEYQGGGGESLEEMNGGEGVVVAQSNARYDGEWENGLPHGYGELTFDAARNI--RYEXXXXXXXXXXRGHMHYADGSVYAGDWKADVKSGQGVMTWMTTRGADEVSSANATPLERYDGEWENDCQEGFGRHVWLVNPLSGSSNKNWYEGEFHEGLRHGRGVFFYANGARXXXXXXXXXXXXXXXXXXXXXRVFVGLFRQDRSV 326
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A3P3XZ51_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3XZ51_PLABS) HSP 1 Score: 88.6 bits (218), Expect = 9.700e-16 Identity = 97/215 (45.12%), Postives = 111/215 (51.63%), Query Frame = 1
Query: 163 AMDGRGRYIWK--SNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSAD-------GTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXE----DRPETPLAIDTQK--QMCNVYRGQWLAGMRHGQGTFLYADESRYV 762
A DG W S G + GD L G G Y G V G+R+G G T +D T Y G W D +RHG G R VG + XXXXXXXXXX Y SGN Y+G WV D K+G G MTW E XXXXXXXXXXXXXXXXXXX+ D D Q CN YRG+++AG RHGQGTF YA+ + Y
Sbjct: 11 ADDGTNTLTWDDVSPGCTFTGDIGAGSLDGAGTYRWGPSSVYVGDVAGGMRSGNGKQTHSDIAVDGDRVTSTYTGTWLDGRRHGKG--RLTVGNAVXXXXXXXXXXXXXXXQK---YGSGNTYDGDWVADLKHGYGVMTWSTTNEVXXXXXXXXXXXXXXXXXXXKISGADAVSKTSTADAMPHLQTCNQYRGEFVAGARHGQGTFTYANGAVYT 220
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A3M7QW85_BRAPC (Radial spoke head 10-like protein (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QW85_BRAPC) HSP 1 Score: 80.1 bits (196), Expect = 2.460e-13 Identity = 92/247 (37.25%), Postives = 121/247 (48.99%), Query Frame = 1
Query: 37 PELGSLIVDEYVGDTDIQGCYSGHGKATFRSGN-SYIGEFRRGAMDGRGRYIWKSNGTIYEGDFSKNELVGIGLXXXNNG-----CSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRY 759
P L S+IV+ Y GD D +G + G GKA ++ G+ X N G +Y G V+ G R+G G+F S + +++Y+G W KR+G G Y T +S + XXXXXXXX Y SGN Y ++GEGTM W + + XXXXXXXXXXXXXXXXXX R E TQ + N Y G + G RHGQGT+LYA+ ++Y
Sbjct: 74 PVLTSIIVENYEGDKD-KGLFEGFGKAFYKGGSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCFNTGEPSEWSTYRGQVLKGKRHGHGVFKSGNSSVIYDGEWNMGKRYGKGKMIYD--TKGLSYYEXXXXXXXXFGWGIRHYPSGNIYXXXXXXXVRHGEGTMRWFDKNQTXXXXXXXXXXXXXXXXXXYLSRVEM-----TQYSLRNSYFGNFKNGKRHGQGTYLYANGTKY 312
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A7S4QKF5_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QKF5_9DINO) HSP 1 Score: 73.9 bits (180), Expect = 9.500e-11 Identity = 86/226 (38.05%), Postives = 113/226 (50.00%), Query Frame = 1
Query: 100 SGHGKATFRSGNSYIGEFRRGAMDGR------GRYIWKSNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVH----RRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYAD 747
S H TF +G++Y G R+ A+ R G Y W + G YEG F +++ G G X +G RNGEG++ +ADG Y+G W+D KRHG+G Y + XXXXXXXXXX + S N TW+ + XXXXXXXXXXXXXXXX + P+ +QM N Y G+W G+RHG+GTF YA+
Sbjct: 46 SKHVTCTF-AGSNYTGVLRQDALGARSLEGPSGTYTW-TTGVRYEGPFVGSQVDGRGKLSXXXXXXXXXXXXNGKRNGEGVYVAADGVTRYQGQWRDGKRHGHGCLTYDA--NGEXXXXXXXXXXXXXXAGYQVWPSKNAXXXXXXXXXXXXXXXXTWLDGDLVEQYCXXXXXXXXXXXXXXXXFAPQPLPDRSTREMPSQQMNNRYEGEWHNGVRHGRGTFSYAN 267
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A3Q4AHB1_MOLML (Radial spoke head 10 homolog B n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q4AHB1_MOLML) HSP 1 Score: 70.1 bits (170), Expect = 1.100e-9 Identity = 71/196 (36.22%), Postives = 94/196 (47.96%), Query Frame = 1
Query: 178 GRYIWKSNGTIY--EGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRY 759
G ++++S G +G+F N G G +G SYEG V +G+R+G G + A ++ Y G W KRHG GV Y S + Y SGN Y TM W++ + XXXXXXXXXXXXXXXXX + A +Q M N Y+G ++ G RHGQGT YA + Y
Sbjct: 11 GGHVYESCGEFLTKQGEFVCNMPKGRGTYTWLDGSSYEGEVHNGIRHGTGTYKCAKTSVSYTGQWDQGKRHGQGVLYYNQ--DKTSWYNGDWVKNSREGWGMRRYPSGNIYCXXXXXXXXXXXXTMRWLNLDQHYXXXXXXXXXXXXXXXXXILRQ-----ATGSQSLMSNQYKGDFVQGQRHGQGTIYYACGATY 199
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A3Q3VNT6_MOLML (Radial spoke head 10 homolog B n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3VNT6_MOLML) HSP 1 Score: 70.1 bits (170), Expect = 1.160e-9 Identity = 71/196 (36.22%), Postives = 94/196 (47.96%), Query Frame = 1
Query: 178 GRYIWKSNGTIY--EGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRY 759
G ++++S G +G+F N G G +G SYEG V +G+R+G G + A ++ Y G W KRHG GV Y S + Y SGN Y TM W++ + XXXXXXXXXXXXXXXXX + A +Q M N Y+G ++ G RHGQGT YA + Y
Sbjct: 11 GGHVYESCGEFLTKQGEFVCNMPKGRGTYTWLDGSSYEGEVHNGIRHGTGTYKCAKTSVSYTGQWDQGKRHGQGVLYYNQ--DKTSWYNGDWVKNSREGWGMRRYPSGNIYCXXXXXXXXXXXXTMRWLNLDQHYXXXXXXXXXXXXXXXXXILRQ-----ATGSQSLMSNQYKGDFVQGQRHGQGTIYYACGATY 199
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A821ZQE2_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821ZQE2_9BILA) HSP 1 Score: 67.0 bits (162), Expect = 1.260e-9 Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 1
Query: 280 YEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRYV 762
Y+G V G R+G G+F L YEG W+ G ++G + + YASGN YEG WV ++G G +W + XXXXXXXXXXXXXXXX R E ++Q + N Y G +L G R+G GTF Y+ ++Y+
Sbjct: 12 YQGDVYRGRRHGTGIFRHGKSLLTYEGEWRMGHIXXXGTLQFG--REGQNYYTGDFIMNIPFGKGRRQYASGNLYEGMWVNGKRHGYGVFSWSNGNGEYLXXXXXXXXXXXXXXXXYIIRAE-----ESQYALRNYYEGNFLDGRRNGYGTFYYSSGTKYI 165
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A7J8IBE6_MOLMO (Radial spoke head 10-like protein B n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8IBE6_MOLMO) HSP 1 Score: 68.6 bits (166), Expect = 3.450e-9 Identity = 77/231 (33.33%), Postives = 96/231 (41.56%), Query Frame = 1
Query: 151 FRRGAMDGRGRYIWK----------------------------SNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRY 759
F G M G+G YIW S G+ ++GDF KN + G +G +YEG VISG+RNG G+F + + Y G W KRHG G Y S + Y SGN M W+ E XXXXXXXXXXXXXXXXX R ++Q + N YRG ++ G R G G F YA + Y
Sbjct: 2 FSEGLMHGQGTYIWADGVKYEEPRPRSSVRPHADAPTDDMRSWSQGSWHQGDFVKNIPMNRGTYTWPDGSTYEGEVISGMRNGFGVFQCSTQPVSYIGHWCQGKRHGKGSIYYN--REGTSCYEGDWVHNTKKGWGIRRYKSGNIXXXXXXXXXXXXXXXMRWLTTNEEYXXXXXXXXXXXXXXXXXFLKR-----IPNSQYPLRNEYRGNFVNGCRQGYGKFYYASGAIY 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6876.14512.1 >prot_H-elongata_contig6876.14512.1 ID=prot_H-elongata_contig6876.14512.1|Name=mRNA_H-elongata_contig6876.14512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp MIVGSGSEYVLGPELGSLIVDEYVGDTDIQGCYSGHGKATFRSGNSYIGEback to top mRNA from alignment at H-elongata_contig6876:510..4479- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6876.14512.1 ID=mRNA_H-elongata_contig6876.14512.1|Name=mRNA_H-elongata_contig6876.14512.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3970bp|location=Sequence derived from alignment at H-elongata_contig6876:510..4479- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6876:510..4479- >mRNA_H-elongata_contig6876.14512.1 ID=mRNA_H-elongata_contig6876.14512.1|Name=mRNA_H-elongata_contig6876.14512.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig6876:510..4479- (Himanthalia elongata Himel1 dioecious)back to top |