mRNA_H-elongata_contig68758.14510.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68758.14510.1
Unique NamemRNA_H-elongata_contig68758.14510.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68758.14510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68758contigH-elongata_contig68758:2571..2855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68758.14510.1prot_H-elongata_contig68758.14510.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68758 2606..2855 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.8056812-UTR-H-elongata_contig68758:2570..26051622931081.8056812-UTR-H-elongata_contig68758:2570..2605Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68758 2571..2605 -
1691679690.420518-UTR-H-elongata_contig68758:2570..26051691679690.420518-UTR-H-elongata_contig68758:2570..2605Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68758 2571..2605 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.8320413-CDS-H-elongata_contig68758:2605..27151622931081.8320413-CDS-H-elongata_contig68758:2605..2715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68758 2606..2715 -
1691679690.430629-CDS-H-elongata_contig68758:2605..27151691679690.430629-CDS-H-elongata_contig68758:2605..2715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68758 2606..2715 -
1622931081.8560534-CDS-H-elongata_contig68758:2734..28551622931081.8560534-CDS-H-elongata_contig68758:2734..2855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68758 2735..2855 -
1691679690.440472-CDS-H-elongata_contig68758:2734..28551691679690.440472-CDS-H-elongata_contig68758:2734..2855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68758 2735..2855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68758.14510.1

>prot_H-elongata_contig68758.14510.1 ID=prot_H-elongata_contig68758.14510.1|Name=mRNA_H-elongata_contig68758.14510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MTCPPVVVKGLPWIGCVEVGSTHVLVLSFSWVAGRDKTSKAMRCNESASP
PTNDSPAGNSVRFSGRRTRQTQECPS*
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mRNA from alignment at H-elongata_contig68758:2571..2855-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68758.14510.1 ID=mRNA_H-elongata_contig68758.14510.1|Name=mRNA_H-elongata_contig68758.14510.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig68758:2571..2855- (Himanthalia elongata Himel1 dioecious)
ATGACATGTCCACCCGTGGTTGTGAAGGGACTTCCTTGGATTGGATGTGT
GGAGGTAGGTAGTACCCATGTGCTTGTGTTGTCATTTTCGTGGGTAGCGG
GTCGGGACAAAACGTCAAAAGGTTCACAGGCTGATGCGAGCCATGCGATG
CAACGAGAGCGCGTCTCCGCCGACGAACGACTCTCCCGCCGGCAATTCTG
TGCGTTTCTCCGGCCGTCGTACCCGTCAGACACAGGAATGTCCTTCGTGA
TCAAAGACCAGTCCAAACCTTGAGCATTCCTGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig68758:2571..2855-

>mRNA_H-elongata_contig68758.14510.1 ID=mRNA_H-elongata_contig68758.14510.1|Name=mRNA_H-elongata_contig68758.14510.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig68758:2571..2855- (Himanthalia elongata Himel1 dioecious)
ATGACATGTCCACCCGTGGTTGTGAAGGGACTTCCTTGGATTGGATGTGT
GGAGGTAGGTAGTACCCATGTGCTTGTGTTGTCATTTTCGTGGGTAGCGG
GTCGGGACAAAACGTCAAAAGATGACATGTCCACCCGTGGTTGTGAAGGG
ACTTCCTTGGATTGGATGTGTGGAGGTAGGTAGTACCCATGTGCTTGTGT
TGTCATTTTCGTGGGTAGCGGGTCGGGACAAAACGTCAAAAGCCATGCGA
TGCAACGAGAGCGCGTCTCCGCCGACGAACGACTCTCCCGCCGGCAATTC
TGTGCGTTTCTCCGGCCGTCGTACCCGTCAGACACAGGAATGTCCTTCGT
GACCATGCGATGCAACGAGAGCGCGTCTCCGCCGACGAACGACTCTCCCG
CCGGCAATTCTGTGCGTTTCTCCGGCCGTCGTACCCGTCAGACACAGGAA
TGTCCTTCGTGA
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