mRNA_H-elongata_contig68686.14504.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Match: D8LB92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB92_ECTSI) HSP 1 Score: 362 bits (928), Expect = 4.500e-119 Identity = 231/393 (58.78%), Postives = 266/393 (67.68%), Query Frame = 1
Query: 100 AMEGTFARIRQATGVSTQEEIIFKLVNQSANFTTLEEEKREAEGKLVKAKAARQSEDARFSCMKASGIGNTELNREISDKLNDEIQELRVEVKMKKAAHERLEVTLTGVKQGSVSLWQRLKPYSFLLDGAEDAHLQRLKEKTDHEVEHDTIKALALSETLLSMMLEVVSASAHDASAGRFPGPGSVGSAGG-----------------------------FRGESGNASGDADDLSDVVSTVNLAESIANSSSTDDTAPAFRNNVRVRSYAQRVEAEQVLEGEEED--VRWSRSSAGRGVGGGNGGVGGRFDRDG-ATEAGIESDDEQAMEDMVPNRTFLKLCSARQHMETIRKIEGDERKKKLAERMECADETEKATLTSKLTRKRQQARAM 1182
AME TFARIRQATGV+T EE++ KL NQS N TLEEEKREAE KL +AK ARQSED RFS MKASG+GNTELNR+ISDKLN++I+E RVE KMKKAAHERL+ TLTGVKQG+VSLWQRL+PYSFLLD + A LQR+KE+TD EV+ DT+KAL LSETLLS+MLEVVS + HDAS RF SAGG G +GN ST AE + P+ RNN+RVRS A RV AE++LE +++ RW+ G G GG G +AG+ESDDEQAMED+VP+RTFLKLCS+RQH ET+RKIE DERKKKLAERME ADETEKATLTSKL RKRQQ AM
Sbjct: 44 AMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEAKMKKAAHERLQNTLTGVKQGAVSLWQRLQPYSFLLDAVDGAQLQRMKEQTDAEVQRDTVKALGLSETLLSIMLEVVSGT-HDASTARFT------SAGGGXXXXXXXXXXXXXVSAXXXXXXXXXXXXXMGSAGNG---------PDSTCASAEEV----------PSMRNNIRVRSIAHRVRAERLLENSDDNDCARWTSPGLG-----GRGGXXXXXXXXGIGVDAGLESDDEQAMEDIVPSRTFLKLCSSRQHTETLRKIESDERKKKLAERMETADETEKATLTSKLARKRQQDLAM 405
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Match: A0A836CDP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDP6_9STRA) HSP 1 Score: 182 bits (463), Expect = 1.150e-49 Identity = 159/401 (39.65%), Postives = 213/401 (53.12%), Query Frame = 1
Query: 22 MFLLRRKERSGKEMKAQNESRLRKVSAMEGTFARIRQATGVSTQEEIIFKLVNQSANFTTLEEEKREAEGKLVKAKAARQSEDARFSCMKASGIGNTELNREISDKLNDEIQELRVEVKMKKAAHERLEVTLTGVKQGSVSLWQRLKPYSFLLDGAEDAHLQRLK-------EKTDHEVEHDTIKALALSETLLSMMLEVVSASAHDASAGRFPGPGSVGSAGGFRGESGNASGDADDLSDVVSTVNLAESIANSSST--DDTAPAFRNNVRVRSYAQRVEAEQVLEGEEEDVRWSRSSAGRGVGGGNGGVGGRFDRDGATEAGIESDDEQAME-----DMVPNRTFLKLCSARQHMETIRKIEGDERKKKLAERMECADETEKATLTSKLTRKRQQARAM 1182
+ LR +E + ++A NE R R+V+A+E TFAR+RQATGV + E+++ K+ NQ+AN TLE E+RE E + + ++ + RF MKASG+G+TELNR+ISDKL E + R EVK K A+E+LE TL V+QG+ L QRL + LL+ + A LQR + E E E +T AL++SET+LS MLEV SA +A +AGG E G+ D D+ S +S +S D A NNVRV S A R E +++D A E DMVP+R FLKLCS+RQ E +R+ E ERK +A ++E ADE+EKA LTSKL RKRQQ RAM
Sbjct: 18 LIALRGREEALGAVRAANEERAREVAALEATFARVRQATGVHSLEDMVAKIANQAANRETLEREEREVERRAAAVRHRQEELEQRFCDMKASGVGSTELNRDISDKLKAEAESYRAEVKATKIAYEKLEETLLAVRQGAKGLCQRLSVHFGLLEEEDAALLQRAQGAGGAQAEMGGCESEAETALALSVSETVLSKMLEVASAGNTGDTAR---------TAGGEADEDGS---DFDNASARAGRGGALDSGGGGASPLLADADAAMHNNVRVVSGAARSRGEGGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAEDGGAYEGDRADDMVPSRAFLKLCSSRQCAEVMRRQEAGERKAVMAAKLEGADESEKAALTSKLARKRQQERAM 406
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Match: A0A6T7CUQ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7CUQ0_9STRA) HSP 1 Score: 164 bits (416), Expect = 6.330e-42 Identity = 136/393 (34.61%), Postives = 211/393 (53.69%), Query Frame = 1
Query: 31 LRRKERSGKEMKAQNESRLRKVSAMEGTFARIRQATGVSTQEEIIFKLVNQSANFTTLEEEKREAEGKLVKAKAARQSEDARFSCMKASGIGNTELNREISDKLNDEIQELRVEVKMKKAAHERLEVTLTGVKQGSVSLWQRLKPYSFLLD--GAEDAHLQRLKEKTDHEVEHDTIKALALSETLLSMMLEVVSASAHDASAGRFPGPGSVGSAGGFRGESGNASGDADDLSDVVSTVNLAESIANSSSTDDTAPAFRNNVRVRSYAQRVEAEQVLEGEEEDVRWSRSSAGRGVGGGNGGVGGRFDRDGATEAGIESDDEQAMEDM-------VPNRTFLKLCSARQHMETIRKIEGDERKKKLAERMECADETEKATLTSKLTRKRQQARAM 1182
L+ +E ++++ +NE R+++ +E F ++RQATGV++ EE++ K V Q N L +E+++ EG+L AK ++ + RFS +KASGIG+TELNREISD+LN +I R+E+K+ KAA ERLE L ++QG+ L+QRL+ + LL+ G + + + + I+A+ LSE +LS M+E V +AS RF + + D + E+ SS D P RNNVRVRS + ++ ++ + +D R + GR I ++E+ EDM VP+R F+KL S+RQH E +RK E D R+KK+ ER+E ADE +K L+S +RK+QQ A+
Sbjct: 199 LQAREADVEKLQKENEENTRQLNKLEEQFTQVRQATGVNSLEEMVDKFVGQEGNRNALIDERKDVEGRLADAKRRKEEAEQRFSELKASGIGSTELNREISDELNHKILSGRMELKVTKAACERLEGVLVALRQGATGLFQRLQTFMHLLESEGLQSGDVATM----------EPIEAINLSEFILSKMMESVGGG--EASPSRF---------------NHTMPNEEDSVDPTDPGAGNDEASTWSSLGLDDLPNPRNNVRVRSMVE----QRDMDAQADDSY--RPTPGR----------------------ISEEEEKGGEDMENVSDHMVPDREFIKLSSSRQHSEMLRKKESDARRKKMQERLEAADEADKKNLSSMASRKKQQRDAI 536
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Match: A0A7S1TX70_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX70_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.330e-35 Identity = 129/398 (32.41%), Postives = 202/398 (50.75%), Query Frame = 1
Query: 40 KERSGKEMKAQNESRLRKVSAMEGTFARIRQATGVSTQEEIIFKLVNQSANFTTLEEEKREAEGKLVKAKAARQSEDARFSCMKASGIGNTELNREISDKLNDEIQELRVEVKMKKAAHERLEVTLTGVKQGSVSLWQRLKPYSFLLDG------AEDAHLQRLKEKTDHEVEHD---------TIKALALSETLLSMMLEVVSASAHDASAGRFPGPGSVGSAGGFRGESGNASGDADDLSDVVSTVNLAESIANSSSTDDTAPAFRNNVRVRSYAQRVEAEQV---LEGEEEDVRWSRSSAGRGVGGGNGGVGGRFDRDGATEAGIESDDEQAMEDMVPNRTFLKLCSARQHMETIRKIEGDERKKKLAERMECADETEKATLTSKLTRKRQQARA 1179
+E S ++++ ++E++ R ME F +IRQATGV+T E+++ K Q N T L EE+REAE +L AK +++ + RF +K SGIG TELNR+I+D LN I E R K+ KAA ERL+ TL +++G+ L+QRL+ Y+ LLDG +A + D + + ++ L E +LS M+E + + S GRF + + +S+ V++V + ++ S TD+ P RNN+RV S ++ E E + +EE S +A I+ D DMVP+R FLKL S RQ E +RK + + R++++AER+ AD+ +K +TS R++ QA A
Sbjct: 106 RENSAEQIRMESEAKNRMAMVMEEAFVQIRQATGVNTLEQMVEKFKEQGTNRTGLLEERREAEDRLADAKRKKEAAEERFMELKQSGIGGTELNRDITDTLNSTILEHRAAYKVSKAATERLQTTLVALREGAAGLFQRLQGYNTLLDGPGSQASTTNAPSSGSFDMVDGQSAYSQDIRANGIAALEGLQQCEIILSKMMEALGGG--EGSPGRFH----------------MLPNEDESVSEEVTSV--TDDSSSLSRTDEPLP-LRNNIRVPSGMKQAEMETLQFSARSDEEPAERMLSDD--------------------LDAIIDEDMADGELDMVPSRQFLKLSSQRQTSEVLRKRDTEFRRQQIAERLAGADDNDKQMMTSNTARRKAQAEA 462
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Match: A0A7S3JSC0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSC0_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.110e-30 Identity = 125/403 (31.02%), Postives = 203/403 (50.37%), Query Frame = 1
Query: 58 EMKAQNESRLRKVSAMEGTFARIRQATGVSTQEEIIFKLVNQSANFTTLEEEKREAEGKLVKAKAARQSEDARFSCMKASGIGNTELNREISDKLNDEIQELRVEVKMKKAAHERLEVTLTGVKQGSVSLWQRLKPYSFLLDGAEDAHLQRL-----KEKTDHEVEHDTIKALALSETLLSMMLEVVSASAHDASAGRFPGPGSVGSAGGFRGESGNASGDADDLSDVVS----TVNLAE---------------SIANSS--STDDTAPAFRNNVRVRSYAQRVEAEQVLEGEEEDVRWSRSSAGRGVGGGNGGVGGRFDRDGAT--EAG-IESDDEQAMEDMVPNRTFLKLCSARQHMETIRKIEGDERKKKLAERMECADETEKATLTSKLTRKRQQARA 1179
E++A++E ++ + +E TF IRQA+GV + +E++ K +Q N +L EK+EAE +L AK + D +F+ +KASGIG+ E+NR+I+ +L EI R+++K A+ +RLE L ++QG++ L+QRL+P+ LL+G L ++ + D+I A+ ++E LLS M+E++S + N D D+ S + T N E +I++ S + D P+ +NN+RV S QR AE V G D + G+ + A +AG IE A ED+VP+R+FLKL S+RQH E +R+IE D RKK+ E M + ++ ++++ RK+ Q A
Sbjct: 44 ELRAKHEFLQKEAAQLESTFLAIRQASGVHSLDEVVDKFQSQEGNRQSLMNEKKEAEERLTNAKNTKYQLDNKFAQLKASGIGSNEMNRDIAQQLETEITHCRLDLKTSNASCQRLESILVALRQGAIGLYQRLRPFVHLLEGEGTIPAAALPNFDHRQSAEPVCSIDSIDAIHVTEILLSKMVEIISGATTT-----------------------NNDADQDETSQTIKDDSCTKNTFEHTQQEKEGEKQFQHTAISHDSEQNNDWRLPSPKNNIRVMSTTQRKSAETVQAGTI-DESFLGPEIGQASQSEPSETTNELNSANALTDQAGNIEIIHNNAHEDVVPSRSFLKLSSSRQHHEMLRRIEHDSRKKRNIE-MADLSQFDRRQISTRAARKKAQNEA 421
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Match: A0A7R9WKC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKC9_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.730e-21 Identity = 65/179 (36.31%), Postives = 111/179 (62.01%), Query Frame = 1
Query: 70 QNESRLRKVSAMEGTFARIRQATGVSTQEEIIFKLVNQSANFTTLEEEKREAEGKLVKAKAARQSEDARFSCMKASGIGNTELNREISDKLNDEIQELRVEVKMKKAAHERLEVTLTGVKQGSVSLWQRLKPYS-FLLDGAEDAHLQRLKEKTDHEVEHDTIKALALSETLLSMMLEVV 603
+NE++ S++E +FA I++ATGV++ E++ K N + L EEKREAE +L K + + ++ +KA+G G+TELNR+I + +++ I + RVE K+ K+ + RLE L G++QG + L+QRL P+ LLDG + +L + + +DT++ L ++E +L ML+ V
Sbjct: 1 ENETKAGAFSSLEESFAYIKRATGVNSLAEMVEKFTNHQEHRDRLLEEKREAEERLSSTKTSLEQAHEKYDQIKANGFGDTELNRQIIEDIDNSITKERVEGKVVKSTNVRLEGVLVGLRQGGMGLYQRLLPFHPTLLDG-DAPNLSESATASAIQAAYDTLEMLKVTEQILGKMLDAV 178
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Match: A0A7S4E8D6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8D6_9STRA) HSP 1 Score: 100 bits (249), Expect = 2.880e-19 Identity = 67/194 (34.54%), Postives = 113/194 (58.25%), Query Frame = 1
Query: 22 MFLLRRKERSGKEMKAQNESRLRKVSAMEGTFARIRQATGVSTQEEIIFKLVNQSANFTTLEEEKREAEGKLVKAKAARQSEDARFSCMKASGIGNTELNREISDKLNDEIQELRVEVKMKKAAHERLEVTLTGVKQGSVSLWQRLKPYSFLLDGAEDAHLQRLKEKTDHEVEHDTIKALALSETLLSMMLEVV 603
M L K+ K ++ +++ ++ + ++ F+ +R+ TGV++ E++ K+ Q N L EKR+A+ +L AK R+ + RFS ++ASGIG TE+NR+++D L +I R E+K ERLE TL G++ G+V L++RL PY LL+ D +K+ +T +AL LSE +L M+E++
Sbjct: 294 MDKLNAKKEELKGLRKAHDALEKEFNQLDEDFSEVRKVTGVNSLAEVVEKIKKQKENKKQLVLEKRDADSRLAGAKQMREKLEKRFSELRASGIGTTEMNRDVADDLEKDIDTARAELKTTTQDCERLEGTLIGLRTGAVGLYERLIPYFNLLEDQPDL----VKKGAPDPKTIETAEALVLSEAMLVKMIELL 483
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Match: K3WYN3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYN3_GLOUD) HSP 1 Score: 98.6 bits (244), Expect = 1.230e-18 Identity = 105/367 (28.61%), Postives = 175/367 (47.68%), Query Frame = 1
Query: 31 LRRKERSGKEMKAQNESRLRKVSAMEGTFARIRQATGVSTQEEIIFKLVNQSANFTTLEEEKREAEGKLVKAKAARQSEDARFSCMKASGIGNTELNREISDKLNDEIQELRVEVKMKKAAHERLEVTLTGVKQGSVSLWQRLKPYSFLLD--GAE-DAHLQRLKEKTDHEVEHDTIKALALSETLLSMMLEVVSASAHDASAGRFPGPGSVGSAGGFRG------ESGNASGDADDLSDVVSTVNLAESIANSSSTDDTAPAFRNNVRVRSYAQRVEAEQVLEGEEEDVRWSRSSAGRGVGGGNGGVGGRFDRDGATEAGIESDDEQAMEDMVPNRTFLKLCSARQHMETIRKIEGDERKKKLAER 1104
+ +ER+ + + N ++ +K + E +++ + G ++ E++ K+ QS +LE+EK +AE KL+ A+ ++ + +KASGIG ELNRE+ + L EIQ+ + +K+ K+A+ERL+ ++GV+QGS L QRLK + LD G E ++ L + + LA++E L+ MLE++ SV S GGF G E G + D DD + + S + + + RNN+RVR +Q E +D S R D G +++G + D +VP+R LK+ S+R E +RK E E++K AE+
Sbjct: 254 IENRERANEALHLANLAKSQKAADFEEVLDQLKLSAGATSLAEVVEKICAQSTTAISLEKEKAQAEAKLIAARQEKEQAVQTLNELKASGIGGIELNREVYNTLESEIQQAKATLKVNKSAYERLDSVISGVRQGSFGLAQRLKAFDDALDTSGLETNSSLLNAAGINTTADQGENADCLAIAELKLTKMLELIGQQNS-----------SVNSFGGFGGDIEESVEDGTSRADMDDRNTLWSPHMNNDPVLH-----------RNNIRVRPGTTLRMRQQ---NERDDAMDSA----------------RSDMSGTSDSGSDHIDV-----LVPSRDILKMSSSRHFSEIMRKKELVEKQKVAAEK 574
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Match: A0A2R5FZS7_9STRA (Ryanodine receptor 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZS7_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.910e-15 Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 94 VSAMEGTFARIRQATGVSTQEEIIFKLVNQSANFTTLEEEKREAEGKLVKAKAARQSEDARFSCMKASGIGNTELNREISDKLNDEIQELRVEVKMKKAAHERLEVTLTGVKQGSVSLWQRLKPYSFLLDGAED 495
VS E F IR+ATGV + +E++ K + QSAN L EEK E E + K K F+ KA+GIG +ELNRE+ DKL++EI E R E+K+K+ +ERLE L V+ G + L RL P+ +L +D
Sbjct: 1902 VSTYEEAFNAIREATGVRSLDEMVEKFLGQSANKQALVEEKFEVEQRQRKLKEELARVQTEFAEFKAAGIGGSELNREMYDKLDNEILEARHELKIKQGVNERLEKVLLQVRAGMLGLMGRLAPFKQVLAFEDD 2035
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Match: A0A0N7L6I8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L6I8_PLAHL) HSP 1 Score: 69.3 bits (168), Expect = 4.870e-9 Identity = 54/213 (25.35%), Postives = 116/213 (54.46%), Query Frame = 1
Query: 1 SSESRGSMFL-LRRKERSGKEMKAQNESRLRKVSAMEGTFARIRQATGVSTQEEIIFKLVNQSANFTTLEEEKREAEGKLVKAKAARQSEDARFSCMKASGIGNTELNREISDKLNDEIQELRVEVKMKKAAHERLEVTLTGVKQGSVSLWQRLKPYSFLLDGAEDAHLQRLKEKTDHEVEHDTI-----------KALALSETLLSMMLEVV 603
S+E M L +R++E + + + A N + +K + E I+ TG ++ +++ K+ Q A +L++EK EAE +L+ ++ ++ + +KAS +GN L+R++ L +EI++ +V +++ K+A + L ++ ++Q L +RL+P+ +L+G H R+ E+T ++ ++D + +L + E L+ + E+V
Sbjct: 299 SAEEESRMLLNIRKREHASEALNAANLIKAQKFADFEALLDEIKLTTGAASLTDVVEKINAQVATSVSLDKEKLEAEERLLVSRRNKELMYKELNELKASYVGNLNLDRDLYSSLENEIRQAKVTLRVNKSAVDHLNGVMSAIRQEFSGLAKRLQPFDDILEGG---HC-RVVEETSNDTDYDNMIPVSSQSSFGTNSLTMIELKLTKIFEIV 507 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68686.14504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68686.14504.1 >prot_H-elongata_contig68686.14504.1 ID=prot_H-elongata_contig68686.14504.1|Name=mRNA_H-elongata_contig68686.14504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=387bp MFLLRRKERSGKEMKAQNESRLRKVSAMEGTFARIRQATGVSTQEEIIFKback to top mRNA from alignment at H-elongata_contig68686:323..2074- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68686.14504.1 ID=mRNA_H-elongata_contig68686.14504.1|Name=mRNA_H-elongata_contig68686.14504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1752bp|location=Sequence derived from alignment at H-elongata_contig68686:323..2074- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68686:323..2074- >mRNA_H-elongata_contig68686.14504.1 ID=mRNA_H-elongata_contig68686.14504.1|Name=mRNA_H-elongata_contig68686.14504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2322bp|location=Sequence derived from alignment at H-elongata_contig68686:323..2074- (Himanthalia elongata Himel1 dioecious)back to top |