mRNA_H-elongata_contig68545.14490.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68545.14490.1
Unique NamemRNA_H-elongata_contig68545.14490.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68545.14490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68545contigH-elongata_contig68545:2348..3288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size582
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.8385408-CDS-H-elongata_contig68545:2347..24081622931079.8385408-CDS-H-elongata_contig68545:2347..2408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68545 2348..2408 +
1691679689.6144989-CDS-H-elongata_contig68545:2347..24081691679689.6144989-CDS-H-elongata_contig68545:2347..2408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68545 2348..2408 +
1622931079.8585737-CDS-H-elongata_contig68545:2769..32871622931079.8585737-CDS-H-elongata_contig68545:2769..3287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68545 2770..3287 +
1691679689.62369-CDS-H-elongata_contig68545:2769..32871691679689.62369-CDS-H-elongata_contig68545:2769..3287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68545 2770..3287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68545.14490.1prot_H-elongata_contig68545.14490.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68545 2348..3287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68545.14490.1

>prot_H-elongata_contig68545.14490.1 ID=prot_H-elongata_contig68545.14490.1|Name=mRNA_H-elongata_contig68545.14490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
AVVEQVDAGSEPIGLLECFLGWNKALVEPPPMPSISPSRFYTPAYTSADI
SPPITPTTTASRGDSPSIDAVRSGPWGHHGRRRCRSNSSRASSSGSTSTA
SRLTPPGQRTPPSLVNSPPSLKYFVGGNGGEAGGSPTRHQYHHSSRAALA
LPCRPEGLFSTPPRRSRQQPILLRGTGLRRGGIDGGSLRPPPA
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mRNA from alignment at H-elongata_contig68545:2348..3288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68545.14490.1 ID=mRNA_H-elongata_contig68545.14490.1|Name=mRNA_H-elongata_contig68545.14490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=941bp|location=Sequence derived from alignment at H-elongata_contig68545:2348..3288+ (Himanthalia elongata Himel1 dioecious)
GCCGTGGTGGAGCAGGTGGACGCAGGGTCTGAGCCGATCGGTCTCCTCGA
GTGTTTCCTAGGTGCGTTGGCACGCATGGTGTGCAGTATTAAGCATGCGG
TGTCTTTCTTTATGTGCAGCAGTTGCTGAGTCGTCTTGCGCAGATGTAGT
AATATTTATATTTAAAAGATTTAAATAAAAATATTTATAATCGAAGTATA
TTAGTAATAATAATAATAGTAATGTGTACCGTACCTGGTAGACATTATGC
CCCGAGCCCGTTCCCTCCTCATTCCTGCCTTCTGAAAGATTCGAGAGATG
TGCGCGAGGTGTGTTCGACGAGGTGTGGTGTGTTGGTGGCCAAAACACGA
GTTATTTGAACGAATCACGTTATTCACCCCCCTTGAACAGGACGAATCGC
CCTACTTATCCCCCTTGAACAGGCTGGAACAAGGCTCTGGTGGAACCGCC
TCCTATGCCATCCATTTCTCCAAGCCGGTTCTACACTCCGGCGTACACCT
CCGCAGATATTTCTCCTCCGATCACGCCCACGACCACCGCCTCCCGTGGC
GACTCGCCGTCGATTGACGCCGTCAGGTCAGGGCCCTGGGGTCACCACGG
GAGGCGTCGTTGCAGGTCCAACAGCAGTAGGGCGTCGTCTTCGGGAAGCA
CCTCGACGGCGTCGAGGTTGACGCCCCCCGGGCAGCGTACGCCTCCTTCG
CTTGTCAATTCTCCGCCGTCGTTGAAATACTTCGTAGGTGGTAATGGTGG
CGAAGCGGGGGGCTCTCCGACTCGTCACCAGTACCACCACTCTTCCCGCG
CAGCCTTGGCCCTTCCCTGCCGTCCGGAGGGGTTATTTTCGACCCCACCG
CGACGGTCGAGGCAGCAGCCGATTCTCTTGCGTGGAACGGGACTACGCCG
CGGTGGCATCGACGGGGGTTCTCTTCGTCCGCCTCCTGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig68545:2348..3288+

>mRNA_H-elongata_contig68545.14490.1 ID=mRNA_H-elongata_contig68545.14490.1|Name=mRNA_H-elongata_contig68545.14490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig68545:2348..3288+ (Himanthalia elongata Himel1 dioecious)
GCCGTGGTGGAGCAGGTGGACGCAGGGTCTGAGCCGATCGGTCTCCTCGA
GTGTTTCCTAGGCCGTGGTGGAGCAGGTGGACGCAGGGTCTGAGCCGATC
GGTCTCCTCGAGTGTTTCCTAGGCTGGAACAAGGCTCTGGTGGAACCGCC
TCCTATGCCATCCATTTCTCCAAGCCGGTTCTACACTCCGGCGTACACCT
CCGCAGATATTTCTCCTCCGATCACGCCCACGACCACCGCCTCCCGTGGC
GACTCGCCGTCGATTGACGCCGTCAGGTCAGGGCCCTGGGGTCACCACGG
GAGGCGTCGTTGCAGGTCCAACAGCAGTAGGGCGTCGTCTTCGGGAAGCA
CCTCGACGGCGTCGAGGTTGACGCCCCCCGGGCAGCGTACGCCTCCTTCG
CTTGTCAATTCTCCGCCGTCGTTGAAATACTTCGTAGGTGGTAATGGTGG
CGAAGCGGGGGGCTCTCCGACTCGTCACCAGTACCACCACTCTTCCCGCG
CAGCCTTGGCCCTTCCCTGCCGTCCGGAGGGGTTATTTTCGACCCCACCG
CGACGGTCGAGGCAGCAGCCGATTCTCTTGCGTGGAACGGGACTACGCCG
CGGTGGCATCGACGGGGGTTCTCTTCGTCCGCCTCCTGCGGCTGGAACAA
GGCTCTGGTGGAACCGCCTCCTATGCCATCCATTTCTCCAAGCCGGTTCT
ACACTCCGGCGTACACCTCCGCAGATATTTCTCCTCCGATCACGCCCACG
ACCACCGCCTCCCGTGGCGACTCGCCGTCGATTGACGCCGTCAGGTCAGG
GCCCTGGGGTCACCACGGGAGGCGTCGTTGCAGGTCCAACAGCAGTAGGG
CGTCGTCTTCGGGAAGCACCTCGACGGCGTCGAGGTTGACGCCCCCCGGG
CAGCGTACGCCTCCTTCGCTTGTCAATTCTCCGCCGTCGTTGAAATACTT
CGTAGGTGGTAATGGTGGCGAAGCGGGGGGCTCTCCGACTCGTCACCAGT
ACCACCACTCTTCCCGCGCAGCCTTGGCCCTTCCCTGCCGTCCGGAGGGG
TTATTTTCGACCCCACCGCGACGGTCGAGGCAGCAGCCGATTCTCTTGCG
TGGAACGGGACTACGCCGCGGTGGCATCGACGGGGGTTCTCTTCGTCCGC
CTCCTGCG
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