mRNA_H-elongata_contig68533.14489.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68533.14489.1
Unique NamemRNA_H-elongata_contig68533.14489.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68533.14489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68533contigH-elongata_contig68533:1632..2470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size839
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68533.14489.1prot_H-elongata_contig68533.14489.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68533 1732..2421 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.740753-UTR-H-elongata_contig68533:1631..17311622931079.740753-UTR-H-elongata_contig68533:1631..1731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68533 1632..1731 +
1691679689.5839944-UTR-H-elongata_contig68533:1631..17311691679689.5839944-UTR-H-elongata_contig68533:1631..1731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68533 1632..1731 +
1622931079.7692022-UTR-H-elongata_contig68533:2421..24701622931079.7692022-UTR-H-elongata_contig68533:2421..2470Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68533 2422..2470 +
1691679689.606067-UTR-H-elongata_contig68533:2421..24701691679689.606067-UTR-H-elongata_contig68533:2421..2470Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68533 2422..2470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.7533174-CDS-H-elongata_contig68533:1731..24211622931079.7533174-CDS-H-elongata_contig68533:1731..2421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68533 1732..2421 +
1691679689.597911-CDS-H-elongata_contig68533:1731..24211691679689.597911-CDS-H-elongata_contig68533:1731..2421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68533 1732..2421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68533.14489.1

>prot_H-elongata_contig68533.14489.1 ID=prot_H-elongata_contig68533.14489.1|Name=mRNA_H-elongata_contig68533.14489.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
MAPSLGTASLRGTAAVSKAFLPSTAALWMLHTRRVLLRRPVPILLRGHAG
RNLQLPRGGRQTTLHATTTVGTAREFLDAEPYQDHNNACAGAANGDYGGE
QGLPPEKKDEEPSAPRRVLLRALFPVAHEPSRCDMFIQRRGTRRDEEGPR
NSRYRQHDQRHFYPRTRPDRRRQTQGRGASSSGSKIRRKCHSEQGQIVVQ
RAGLLDGYEVAREIREGGVEITCGVERRY*
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mRNA from alignment at H-elongata_contig68533:1632..2470+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68533.14489.1 ID=mRNA_H-elongata_contig68533.14489.1|Name=mRNA_H-elongata_contig68533.14489.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=839bp|location=Sequence derived from alignment at H-elongata_contig68533:1632..2470+ (Himanthalia elongata Himel1 dioecious)
CTATGCATGAATACGATCTATATAACCCACCCACCCTCTCCAAAAAAAAG
CATGCTAGGGAGAGCGTCGAGCAGCACACACCAACTCTGCACGACTCTCG
ATGGCCCCGAGCCTTGGAACGGCCTCTTTACGAGGTACAGCCGCGGTATC
CAAGGCTTTTCTACCCTCCACCGCTGCCCTTTGGATGCTCCACACACGGC
GCGTCCTTCTGCGACGACCCGTGCCCATTTTGTTGCGTGGGCATGCCGGT
CGAAACCTCCAGCTCCCGAGGGGCGGAAGACAGACGACTCTTCATGCCAC
CACCACCGTAGGCACCGCCCGTGAGTTTCTCGACGCAGAACCTTACCAAG
ATCACAATAACGCCTGCGCAGGTGCCGCAAATGGTGACTACGGCGGCGAG
CAAGGCCTGCCACCAGAGAAGAAGGATGAAGAGCCGAGCGCACCACGCCG
CGTCCTTCTTCGCGCTCTGTTCCCAGTTGCGCACGAGCCATCGCGTTGCG
ACATGTTCATCCAGCGGAGGGGAACCCGCCGCGATGAAGAGGGCCCACGA
AACAGTCGGTACCGCCAACACGACCAGCGCCACTTTTACCCAAGGACTAG
ACCTGACCGACGCCGGCAGACGCAAGGCCGCGGTGCAAGCTCCTCGGGCA
GCAAGATACGCCGCAAATGTCACAGCGAGCAGGGACAGATAGTTGTGCAG
CGAGCTGGTTTGCTGGACGGCTACGAGGTCGCTCGCGAAATACGCGAAGG
CGGAGTGGAAATCACGTGTGGAGTGGAGCGCCGCTATTAATGCCACCAAG
ACGATGAAGAATGCCGCCTCTACGACGCTCCTCTTGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig68533:1632..2470+

>mRNA_H-elongata_contig68533.14489.1 ID=mRNA_H-elongata_contig68533.14489.1|Name=mRNA_H-elongata_contig68533.14489.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig68533:1632..2470+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCCGAGCCTTGGAACGGCCTCTTTACGAGGTACAGCCGCGGTATC
CAAGGCTTTTCTACCCTCCACCGCTGCCCTTTGGATGCTCCACACACGGC
GCGTCCTTCTGCGACGACCCGTGCCCATTTTGTTGCGTGGGCATGCCGGT
CGAAACCTCCAGCTCCCGAGGGGCGGAAGACAGACGACTCTTCATGCCAC
CACCACCGTAGGCACCGCCCGTGAGTTTCTCGACGCAGAACCTTACCAAG
ATCACAATAACGCCTGCGCAGGTGCCGCAAATGGTGACTACGGCGGCGAG
CAAGGCCTGCCACCAGAGAAGAAGGATGAAGAGCCGAGCGCACCACGCCG
CGTCCTTCTTCGCGCTCTGTTCCCAGTTGCGCACGAGCCATCGCGTTGCG
ACATGTTCATCCAGCGGAGGGGAACCCGCCGCGATGAAGAGGGCCCACGA
AACAGTCGGTACCGCCAACACGACCAGCGCCACTTTTACCCAAGGACTAG
ACCTGACCGACGCCGGCAGACGCAAGGCCGCGGTGCAAGCTCCTCGGGCA
GCAAGATACGCCGCAAATGTCACAGCGAGCAGGGACAGATAGTTGTGCAG
CGAGCTGGTTTGCTGGACGGCTACGAGGTCGCTCGCGAAATACGCGAAGG
CGGAGTGGAAATCACGTGTGGAGTGGAGCGCCGCTATTAAATGGCCCCGA
GCCTTGGAACGGCCTCTTTACGAGGTACAGCCGCGGTATCCAAGGCTTTT
CTACCCTCCACCGCTGCCCTTTGGATGCTCCACACACGGCGCGTCCTTCT
GCGACGACCCGTGCCCATTTTGTTGCGTGGGCATGCCGGTCGAAACCTCC
AGCTCCCGAGGGGCGGAAGACAGACGACTCTTCATGCCACCACCACCGTA
GGCACCGCCCGTGAGTTTCTCGACGCAGAACCTTACCAAGATCACAATAA
CGCCTGCGCAGGTGCCGCAAATGGTGACTACGGCGGCGAGCAAGGCCTGC
CACCAGAGAAGAAGGATGAAGAGCCGAGCGCACCACGCCGCGTCCTTCTT
CGCGCTCTGTTCCCAGTTGCGCACGAGCCATCGCGTTGCGACATGTTCAT
CCAGCGGAGGGGAACCCGCCGCGATGAAGAGGGCCCACGAAACAGTCGGT
ACCGCCAACACGACCAGCGCCACTTTTACCCAAGGACTAGACCTGACCGA
CGCCGGCAGACGCAAGGCCGCGGTGCAAGCTCCTCGGGCAGCAAGATACG
CCGCAAATGTCACAGCGAGCAGGGACAGATAGTTGTGCAGCGAGCTGGTT
TGCTGGACGGCTACGAGGTCGCTCGCGAAATACGCGAAGGCGGAGTGGAA
ATCACGTGTGGAGTGGAGCGCCGCTATTAA
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