mRNA_H-elongata_contig68468.14481.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Match: D8LN05_ECTSI (PHD-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI) HSP 1 Score: 220 bits (560), Expect = 8.710e-65 Identity = 123/147 (83.67%), Postives = 127/147 (86.39%), Query Frame = 1
Query: 1 QLVNELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDSSFDLSNVYEKECFMSGQKLVAIISEAASAGISLQADRRVKNQQPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 441
QLVNELGG VAEMTGRKGRMVKK DGE K + S + NV+EKECFMSGQKLVAIISEAASAGISLQADRR KNQ+PRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFAS VS RLESLGALTQ
Sbjct: 121 QLVNELGGAGVVAEMTGRKGRMVKKPDGEVVYEKRNANG-ISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQ 266
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Match: A0A7S3JZA5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZA5_9STRA) HSP 1 Score: 186 bits (472), Expect = 8.300e-52 Identity = 101/149 (67.79%), Postives = 121/149 (81.21%), Query Frame = 1
Query: 4 LVNELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDS---SFDLSNVYEKECFMSGQKLVAIISEAASAGISLQADRRVKNQQPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 441
L++ LGG VAEMTGRK RMV+ D ++ ++ + + S ++ N++EK CF +G+K VAIISEAASAGISLQADRRV NQ+ RVHIT+ELPWSADKA+QQLGRSHRSNQSSAP YK L+SSVGGERRFAS V+RRLESLGALTQ
Sbjct: 819 LIDALGGSENVAEMTGRKNRMVR--DPKTGKVRQEVRNEKNGVSLEMQNMHEKRCFQNGEKCVAIISEAASAGISLQADRRVPNQKRRVHITLELPWSADKAIQQLGRSHRSNQSSAPEYKFLISSVGGERRFASAVARRLESLGALTQ 965
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Match: A0A2G3BC98_CAPCH (Protein strawberry notch-like protein 1 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BC98_CAPCH) HSP 1 Score: 175 bits (444), Expect = 3.930e-51 Identity = 90/143 (62.94%), Postives = 114/143 (79.72%), Query Frame = 1
Query: 13 ELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDSSFDLSNVYEKECFMSGQKLVAIISEAASAGISLQADRRVKNQQPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 441
ELGG VAE+TGRKG +V+ G+ + D S ++ N++EK+ FM G+KLVAIISEA SAG+SLQADRR NQ+ RVH+T+ELPWSAD+A+QQ GR+HRSNQ+SAP YKLL +++GGERRFAS V++RLESLGALTQ
Sbjct: 45 ELGGPENVAEITGRKGMLVRAASGKGVTYQARNTKDVSMEMVNIHEKQLFMEGKKLVAIISEAGSAGVSLQADRRALNQRRRVHVTLELPWSADRAIQQFGRTHRSNQASAPEYKLLFTNLGGERRFASVVAKRLESLGALTQ 187
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Match: UPI00077B237B (LOW QUALITY PROTEIN: protein strawberry notch homolog 1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B237B) HSP 1 Score: 171 bits (434), Expect = 1.740e-50 Identity = 92/146 (63.01%), Postives = 115/146 (78.77%), Query Frame = 1
Query: 1 QLVNELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDSSFDLSNVYEKECFMSGQKLVAIISEAASAGISLQADRRVKNQQPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALT 438
+L+++LGG VAEMTGRK R+V EDG + + + + D +L N+ EK+ FM G+K VA+ISEAAS+G+SLQADRR KNQ+ RVHIT+ELPWSADKA+QQ GRSHRSNQ SAP Y L+S + GERRFAS V++RLESLGALT
Sbjct: 23 KLIHDLGGPDNVAEMTGRKNRVVSNEDG-TISYESRSKQDVPLELLNIAEKKRFMDGEKNVAVISEAASSGVSLQADRRAKNQRRRVHITLELPWSADKAIQQFGRSHRSNQVSAPEYLFLISELAGERRFASIVAKRLESLGALT 167
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Match: A0A8J2S7U1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7U1_9STRA) HSP 1 Score: 181 bits (460), Expect = 3.170e-50 Identity = 101/148 (68.24%), Postives = 120/148 (81.08%), Query Frame = 1
Query: 4 LVNELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDS--SFDLSNVYEKECFMSGQKLVAIISEAASAGISLQADRRVKNQQPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 441
L+ ELGG VAEMTGRKGRMV+ D S + ++ + S ++ N++EK+ F G+K VAIISEAASAGISLQADRRV NQ+ RVHIT+ELPWSADKA+QQLGR+HRSNQSSAP YK L+SSVGGE+RFAS V+RRLESLGALTQ
Sbjct: 722 LIAELGGSDCVAEMTGRKGRMVR--DATSGKVVYEARNSNGVSLEMQNMHEKQAFNGGEKHVAIISEAASAGISLQADRRVANQRRRVHITLELPWSADKAIQQLGRTHRSNQSSAPEYKFLISSVGGEKRFASAVARRLESLGALTQ 867
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Match: A0A7S4A0M8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0M8_9STRA) HSP 1 Score: 181 bits (460), Expect = 3.400e-50 Identity = 101/148 (68.24%), Postives = 120/148 (81.08%), Query Frame = 1
Query: 4 LVNELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDS--SFDLSNVYEKECFMSGQKLVAIISEAASAGISLQADRRVKNQQPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALTQ 441
L+ ELGG VAEMTGRKGRMV+ D S + ++ + S ++ N++EK+ F G+K VAIISEAASAGISLQADRRV NQ+ RVHIT+ELPWSADKA+QQLGR+HRSNQSSAP YK L+SSVGGE+RFAS V+RRLESLGALTQ
Sbjct: 722 LIAELGGSDCVAEMTGRKGRMVR--DATSGKVVYEARNSNGVSLEMQNMHEKQAFNGGEKHVAIISEAASAGISLQADRRVANQRRRVHITLELPWSADKAIQQLGRTHRSNQSSAPEYKFLISSVGGEKRFASAVARRLESLGALTQ 867
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Match: A0A0K0ELL9_STRER (Uncharacterized protein n=1 Tax=Strongyloides stercoralis TaxID=6248 RepID=A0A0K0ELL9_STRER) HSP 1 Score: 181 bits (460), Expect = 3.450e-50 Identity = 96/146 (65.75%), Postives = 117/146 (80.14%), Query Frame = 1
Query: 1 QLVNELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDSSFDLSNVYEKECFMSGQKLVAIISEAASAGISLQADRRVKNQQPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALT 438
QL++ELGG VAEMTGRKGR+V KE+GE + D++ +L NV EK FM G+KL+AIISEAAS+GISLQADRR +N++ RVHITMELPWSADKA+QQ GR+HRSNQ SAP Y L+S + GE+RFAS V++RLESLGALT
Sbjct: 1212 QLIDELGGPEFVAEMTGRKGRVVTKENGEVEYQQRHIGTDATVELMNVEEKHKFMKGEKLIAIISEAASSGISLQADRRAENKRRRVHITMELPWSADKAIQQFGRTHRSNQVSAPEYLFLISELAGEKRFASIVAKRLESLGALT 1357
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Match: A0A1B0D8D3_PHLPP (Helicase_C_4 domain-containing protein n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0D8D3_PHLPP) HSP 1 Score: 172 bits (437), Expect = 4.070e-50 Identity = 94/146 (64.38%), Postives = 116/146 (79.45%), Query Frame = 1
Query: 1 QLVNELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDSSFDLSNVYEKECFMSGQKLVAIISEAASAGISLQADRRVKNQQPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALT 438
QL++ELGG VAEMTGRKGR+V+ EDG+ E D + N+ EK FM+G+K VAIISEAAS+GISLQ+DRRV+NQ+ RVHIT+ELPWSAD+A+QQ GR+HRSNQ +AP Y L+S + GERRFASTV++RLESLGALT
Sbjct: 41 QLIDELGGPENVAEMTGRKGRVVQTEDGQIQYESRS-EQDVPLETLNLTEKGRFMNGEKDVAIISEAASSGISLQSDRRVRNQRRRVHITLELPWSADRAIQQFGRTHRSNQVNAPEYIFLISDLAGERRFASTVAKRLESLGALT 185
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Match: A0A0K0FW75_STRVS (Protein strawberry notch homolog 2 (inferred by orthology to a human protein) n=2 Tax=Strongyloides TaxID=6247 RepID=A0A0K0FW75_STRVS) HSP 1 Score: 181 bits (459), Expect = 4.660e-50 Identity = 96/146 (65.75%), Postives = 117/146 (80.14%), Query Frame = 1
Query: 1 QLVNELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDSSFDLSNVYEKECFMSGQKLVAIISEAASAGISLQADRRVKNQQPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALT 438
QL++ELGG VAEMTGRKGR+V KE+GE + D++ +L NV EK FM G+KL+AIISEAAS+GISLQADRR +N++ RVHITMELPWSADKA+QQ GR+HRSNQ SAP Y L+S + GE+RFAS V++RLESLGALT
Sbjct: 917 QLIDELGGPEFVAEMTGRKGRVVTKENGEVEYQQRHVGTDATVELMNVEEKHKFMKGEKLIAIISEAASSGISLQADRRAENKRRRVHITMELPWSADKAIQQFGRTHRSNQVSAPEYLFLISELAGEKRFASIVAKRLESLGALT 1062
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Match: A0A0P5BEC0_9CRUS (Protein strawberry notch n=6 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5BEC0_9CRUS) HSP 1 Score: 181 bits (458), Expect = 6.330e-50 Identity = 98/146 (67.12%), Postives = 119/146 (81.51%), Query Frame = 1
Query: 1 QLVNELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDSSFDLSNVYEKECFMSGQKLVAIISEAASAGISLQADRRVKNQQPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASTVSRRLESLGALT 438
QL++ELGG VAEMTGRKGR+V+ +DG+ EVD ++ N+ EKE FM+G+K VAIISEAAS+GISLQADRRVKNQ+ RVHIT+ELPWSAD+AVQQ GR+HRSNQ SAP Y L+S++ GERRFAS V++RLESLGALT
Sbjct: 884 QLIDELGGPENVAEMTGRKGRVVQNDDGQVQYESRS-EVDVPLEILNIREKERFMAGEKDVAIISEAASSGISLQADRRVKNQRRRVHITLELPWSADRAVQQFGRTHRSNQVSAPEYIFLISNLAGERRFASIVAKRLESLGALT 1028 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68468.14481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68468.14481.1 >prot_H-elongata_contig68468.14481.1 ID=prot_H-elongata_contig68468.14481.1|Name=mRNA_H-elongata_contig68468.14481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp QLVNELGGVSKVAEMTGRKGRMVKKEDGESHALKHDFEVDSSFDLSNVYEback to top mRNA from alignment at H-elongata_contig68468:668..2194- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68468.14481.1 ID=mRNA_H-elongata_contig68468.14481.1|Name=mRNA_H-elongata_contig68468.14481.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1527bp|location=Sequence derived from alignment at H-elongata_contig68468:668..2194- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68468:668..2194- >mRNA_H-elongata_contig68468.14481.1 ID=mRNA_H-elongata_contig68468.14481.1|Name=mRNA_H-elongata_contig68468.14481.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig68468:668..2194- (Himanthalia elongata Himel1 dioecious)back to top |