mRNA_H-elongata_contig68458.14479.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68458.14479.1
Unique NamemRNA_H-elongata_contig68458.14479.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: D7G411_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G411_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.720e-14
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   16 QAMKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEFSKAW 165
            +A+K LLNWTHP KT +V+  VA+ W++L++VPGR+IVL +GL EFSKAW
Sbjct: 1774 EAVKNLLNWTHPPKTLLVYAIVALAWLVLLVVPGRYIVLTLGLLEFSKAW 1823
[Close]
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: A0A6H5L011_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L011_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.090e-14
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   16 QAMKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEFSKAW 165
            +A+K LLNWTHP KT +V+  VA+ W++L++VPGR+IVL +GL EFSKAW
Sbjct: 1911 EAVKNLLNWTHPPKTLLVYTVVALAWLVLLVVPGRYIVLTLGLLEFSKAW 1960
[Close]
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: A0A7S3H4K2_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4K2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.510e-9
Identity = 25/46 (54.35%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   16 QAMKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEF 153
            +++K LLNWT P KTF ++ A+  +W++ ++VPGR IVLA+GLYEF
Sbjct:  133 ESLKNLLNWTSPSKTFPLYVALVAVWLVTILVPGRLIVLAIGLYEF 178
[Close]
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: A0A7S2C9G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9G1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.530e-8
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   16 QAMKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEFSKAWV 168
            +++K LLNWTHP KT +V+ A   +W++++ VPGR+I L   L+EF K ++
Sbjct:   49 ESLKNLLNWTHPRKTCMVYVAAVSIWVVVIYVPGRYIFLLATLWEFLKKFI 99
[Close]
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: A0A7S3XLU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLU3_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 1.370e-6
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   16 QAMKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEFS 156
            +A K LLNWTHP KT  V+ AV +L+ +L+ VP R +VLAVGL +FS
Sbjct:  189 EAAKNLLNWTHPGKTAAVYLAVLLLYAVLVWVPVRLLVLAVGLQQFS 235
[Close]
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: A0A7S2KPX7_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPX7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.220e-6
Identity = 20/46 (43.48%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   16 QAMKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEF 153
            ++ + L  W  P K+ +VF A++++W++L I+P RFI+L+ GLYEF
Sbjct:  785 ESFRNLFTWACPQKSMLVFSALSMVWIVLCIIPTRFIILSAGLYEF 830
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G411_ECTSI3.720e-1462.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L011_9PHAE5.090e-1462.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3H4K2_9STRA9.510e-954.35Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S2C9G1_9STRA2.530e-845.10Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XLU3_HETAK1.370e-657.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2KPX7_9STRA5.220e-643.48Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68458contigH-elongata_contig68458:146..313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D7G411
KEGG koko:K10360,ko:K19839,ko:K20644
KEGG Pathwayko04011,map04011
GOsGO:0001709,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0008047,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0030029,GO:0030036,GO:0030154,GO:0030234,GO:0030695,GO:0030865,GO:0030866,GO:0032502,GO:0032970,GO:0033036,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045167,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051179,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0098772,GO:0099568
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1453@1,KOG1453@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Hectar predicted targeting categorysignal anchor
Exons1
Model size168
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.5692785-UTR-H-elongata_contig68458:145..1661622931078.5692785-UTR-H-elongata_contig68458:145..166Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68458 146..166 +
1691679689.2253308-UTR-H-elongata_contig68458:145..1661691679689.2253308-UTR-H-elongata_contig68458:145..166Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68458 146..166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.5838416-CDS-H-elongata_contig68458:166..3131622931078.5838416-CDS-H-elongata_contig68458:166..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68458 167..313 +
1691679689.240354-CDS-H-elongata_contig68458:166..3131691679689.240354-CDS-H-elongata_contig68458:166..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68458 167..313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68458.14479.1prot_H-elongata_contig68458.14479.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68458 167..313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68458.14479.1

>prot_H-elongata_contig68458.14479.1 ID=prot_H-elongata_contig68458.14479.1|Name=mRNA_H-elongata_contig68458.14479.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEFSKAWV
back to top

mRNA from alignment at H-elongata_contig68458:146..313+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68458.14479.1 ID=mRNA_H-elongata_contig68458.14479.1|Name=mRNA_H-elongata_contig68458.14479.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig68458:146..313+ (Himanthalia elongata Himel1 dioecious)
TTCCTCCTTATACCTCAGGCAATGAAACAGCTCCTCAACTGGACACATCC
CCACAAGACCTTTATCGTTTTTGGTGCGGTTGCGATTCTGTGGATGCTGC
TCATGATCGTGCCGGGACGGTTCATCGTTCTTGCTGTGGGGCTGTACGAG
TTTTCCAAGGCCTGGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig68458:146..313+

>mRNA_H-elongata_contig68458.14479.1 ID=mRNA_H-elongata_contig68458.14479.1|Name=mRNA_H-elongata_contig68458.14479.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig68458:146..313+ (Himanthalia elongata Himel1 dioecious)
ATGAAACAGCTCCTCAACTGGACACATCCCCACAAGACCTTTATCGTTTT
TGGTGCGGTTGCGATTCTGTGGATGCTGCTCATGATCGTGCCGGGACGGT
TCATCGTTCTTGCTGTGGGGCTGTACGAGTTTTCCAAGGCCTGGGTGATG
AAACAGCTCCTCAACTGGACACATCCCCACAAGACCTTTATCGTTTTTGG
TGCGGTTGCGATTCTGTGGATGCTGCTCATGATCGTGCCGGGACGGTTCA
TCGTTCTTGCTGTGGGGCTGTACGAGTTTTCCAAGGCCTGGGTG
back to top