mRNA_H-elongata_contig68440.14477.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: D8LRA5_ECTSI (SEC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA5_ECTSI) HSP 1 Score: 166 bits (421), Expect = 1.570e-45 Identity = 82/112 (73.21%), Postives = 95/112 (84.82%), Query Frame = 1
Query: 4 SALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMANLDQM 339
S LEL+ PFL V+RSPE NGVLT+AAL+SLQ F +RL++E+SVHA AV +LVDALIGCRFEETQ+ HDEAVRA I+ +L ACLEGGAG WL DEVVW +LQTCMANLDQM
Sbjct: 60 SRLELVSPFLLVVRSPETNGVLTEAALRSLQVFSRDRLIEENSVHASEAVGDLVDALIGCRFEETQQDHDEAVRARIMHVLAACLEGGAGVWLSDEVVWAVLQTCMANLDQM 171
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A6H5L1A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A5_9PHAE) HSP 1 Score: 120 bits (301), Expect = 1.480e-32 Identity = 66/112 (58.93%), Postives = 77/112 (68.75%), Query Frame = 1
Query: 4 SALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMANLDQM 339
S LEL+ PFL+V+RSPE NGVLT+AAL+SLQAF +RL+ FEETQ+ HDEAVRA I+ +L ACLEGGAG L DEVVW +LQTCMANLDQM
Sbjct: 60 SRLELVSPFLSVVRSPETNGVLTEAALRSLQAFSRDRLIGG--------------------FEETQQDHDEAVRARIMHVLAACLEGGAGVCLSDEVVWAVLQTCMANLDQM 151
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A7R9U6R0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6R0_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 3.430e-21 Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 1 FSALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMAN 327
FSAL+++ P L V+RSP+A+G T AAL+++++ L L VHA A E+++A+ CRFE+T DE V A ++ +LV C+ G G ++ DE VW+ LQTC N
Sbjct: 58 FSALDIVAPLLVVVRSPQASGPFTLAALRAIKSLLQRGALASHLVHAPDAANEVIEAVAACRFEQTDAQLDEVVLAELMDVLVCCIRGPLGQYVGDEAVWDALQTCFVN 166
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A1E3QMU8_9ASCO (SEC7 domain-containing protein (Fragment) n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QMU8_9ASCO) HSP 1 Score: 82.8 bits (203), Expect = 3.950e-16 Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 7 ALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGA-GAWLPDEVVWEMLQTCMA 324
+L LL PFL V++SP +G++T AL S+ FL LL DS + +++++V AL CRFE + D+AV +++LL A L GG A+L DEVV E++QTC++
Sbjct: 88 SLTLLQPFLLVIKSPSTSGMITSLALNSINKFLTYGLLSLDSKNIHVSISQVVSALTHCRFEAGDQASDDAVLLKVLRLLEALLVGGTISAYLTDEVVTEVIQTCLS 194
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A4D9CY88_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY88_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 9.520e-15 Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 13 ELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDS------VHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLL--VACLEGGAGAWLPDEVVWEMLQTCMAN 327
E+L PFL ++RS EA+G T A L+SLQA L +L E V AV LV+ L+ CRFEET+ G DE VR ++ LL V EG A W+ D VWE++ C+ +
Sbjct: 94 EVLSPFLEIVRSGEASGPFTGAGLRSLQALLDAGVLSEGGREGGREVRRGLAVQVLVEGLVRCRFEETERGEDEVVRMQVLGLLREVMGREGWA-RWVGDAAVWEVVVACLES 205
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: F2QPM3_KOMPC (ARF guanine-nucleotide exchange factor 2 n=3 Tax=Komagataella TaxID=460517 RepID=F2QPM3_KOMPC) HSP 1 Score: 78.6 bits (192), Expect = 1.210e-14 Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 1
Query: 7 ALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMA 324
+L LL PFL V++SPE +G +T AL +L L LL E S++A+ A+ + VDAL CRF+ D+AV ++ LL A +E G L D+V+++++QTC++
Sbjct: 106 SLTLLQPFLMVVKSPETSGYVTSLALTTLHKVLRYSLLTESSLNAVSALHQTVDALTHCRFQSDNTS-DDAVLLRVLGLLQAIVESSVGYLLSDDVLYDIIQTCLS 210
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A446N5W3_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446N5W3_TRITD) HSP 1 Score: 72.4 bits (176), Expect = 3.270e-13 Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1
Query: 16 LLF--PFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMANLDQ 336
LLF PFL V+RS EA T AAL SL L L+ D+ A A+A +V+A+ GCRFE T +EAV A +Q+L+AC+ G A L + V +++ TC + Q
Sbjct: 70 LLFLGPFLDVVRSDEAGAPATGAALSSLCKVLSLDLVGPDAPGADRAMAAVVEAVAGCRFEVTDAASEEAVLARALQVLLACVRGRAARALSNRHVCDVVSTCFRVVQQ 178
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: F2DIW3_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2DIW3_HORVV) HSP 1 Score: 71.2 bits (173), Expect = 9.560e-13 Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 19 LFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMANLDQ 336
L PFL V+RS EA T AAL SL L D+ A A+A +V+A+ GCRFE T +EAV A +Q+L+AC+ G A L + V +++ TC + Q
Sbjct: 76 LGPFLGVVRSDEAGAPATGAALSSLCKVLSLDPFGPDAPGAARAMAAVVEAVAGCRFEVTDAASEEAVLARALQVLLACVRGRAAPALSNRHVCDVVSTCFRVVQQ 181
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A3B6EF81_WHEAT (SEC7 domain-containing protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A3B6EF81_WHEAT) HSP 1 Score: 72.4 bits (176), Expect = 1.750e-12 Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1
Query: 16 LLF--PFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMANLDQ 336
LLF PFL V+RS EA T AAL SL L L+ D+ A A+A +V+A+ GCRFE T +EAV A +Q+L+AC+ G A L + V +++ TC + Q
Sbjct: 70 LLFLGPFLDVVRSDEAGAPATGAALSSLCKVLSLDLVGPDAPGADRAMAAVVEAVAGCRFEVTDAASEEAVLARALQVLLACVRGRAARALSNRHVCDVVSTCFRVVQQ 178
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A421JCW7_9ASCO (Orotidine 5'-phosphate decarboxylase n=3 Tax=Meyerozyma TaxID=766728 RepID=A0A421JCW7_9ASCO) HSP 1 Score: 72.4 bits (176), Expect = 1.760e-12 Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 7 ALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMA 324
+L LL PFL V++S +G +T AL SLQ F+ +++ S + A+ ++V +L CRFE + D+AV +++LL LE LP+E+V E++QTC++
Sbjct: 95 SLTLLQPFLMVIKSSSTSGRITALALSSLQKFIRYDIINIHSKNVQNAMIQIVTSLTHCRFEAADQNSDDAVLLKVLRLLELILESPLSNLLPNEIVSEVVQTCLS 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68440.14477.1 >prot_H-elongata_contig68440.14477.1 ID=prot_H-elongata_contig68440.14477.1|Name=mRNA_H-elongata_contig68440.14477.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp FSALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAback to top mRNA from alignment at H-elongata_contig68440:1362..2264+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68440.14477.1 ID=mRNA_H-elongata_contig68440.14477.1|Name=mRNA_H-elongata_contig68440.14477.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=903bp|location=Sequence derived from alignment at H-elongata_contig68440:1362..2264+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68440:1362..2264+ >mRNA_H-elongata_contig68440.14477.1 ID=mRNA_H-elongata_contig68440.14477.1|Name=mRNA_H-elongata_contig68440.14477.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig68440:1362..2264+ (Himanthalia elongata Himel1 dioecious)back to top |