mRNA_H-elongata_contig6843.14476.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6843.14476.1
Unique NamemRNA_H-elongata_contig6843.14476.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6843.14476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6843contigH-elongata_contig6843:7331..10495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2864
Cds size1554
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6843.14476.1prot_H-elongata_contig6843.14476.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6843 7419..9273 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.1718178-UTR-H-elongata_contig6843:7330..74181622931078.1718178-UTR-H-elongata_contig6843:7330..7418Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6843 7331..7418 +
1691679689.0264878-UTR-H-elongata_contig6843:7330..74181691679689.0264878-UTR-H-elongata_contig6843:7330..7418Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6843 7331..7418 +
1622931078.222862-UTR-H-elongata_contig6843:9273..104951622931078.222862-UTR-H-elongata_contig6843:9273..10495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6843 9274..10495 +
1691679689.0559874-UTR-H-elongata_contig6843:9273..104951691679689.0559874-UTR-H-elongata_contig6843:9273..10495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6843 9274..10495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.1894426-CDS-H-elongata_contig6843:7418..87201622931078.1894426-CDS-H-elongata_contig6843:7418..8720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 7419..8720 +
1691679689.035272-CDS-H-elongata_contig6843:7418..87201691679689.035272-CDS-H-elongata_contig6843:7418..8720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 7419..8720 +
1622931078.2036588-CDS-H-elongata_contig6843:9021..92731622931078.2036588-CDS-H-elongata_contig6843:9021..9273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 9022..9273 +
1691679689.0447652-CDS-H-elongata_contig6843:9021..92731691679689.0447652-CDS-H-elongata_contig6843:9021..9273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 9022..9273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6843.14476.1

>prot_H-elongata_contig6843.14476.1 ID=prot_H-elongata_contig6843.14476.1|Name=mRNA_H-elongata_contig6843.14476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=518bp
MVKGPCVPADGDCKPGPGDTGPKSSRTRLEYLLEMACSWEGKKGEKSAGV
SCTTRGETDISAEDGFAKLRERSPPPKDALEFRKVGEGVDRESGVGVSEK
GTKGSSVKENYLPGDSVEGIKKVWETGFAERRQDARGGERAMARVERCLT
RLAKGMHGELELEEAKESVGGGGRRGQEGDEKPEEEAVVTGGSMTKQIVS
LRVDRAEKEVVLSRAWRNRVQRREAPDVEGSADGRTGALTRHEEVGSDDE
LANSDSVGPRQGQESTPEMNNNEKLEENGHSSEGCIEQGRSGVEANQRCE
RVDVPQSSFLAQKGYDDIVHSNPTPSPNSPISRSARMPVRRIRRPLAPKP
GFAVGERPNGSPLEHGRDQEHLARPVEEEMGGGGMHEEDDRSISGVSDRP
GVESPDGANGRCGQGEDSNLATPMATPRTPTAIRRIATADWGGSANSSAV
AHDEEESVPRDPWGGGSSNEGNLGAYDEMDTQVPKPPPNFMRVYGSVGIT
RVRRSIQNLFAQRQPAL*
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mRNA from alignment at H-elongata_contig6843:7331..10495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6843.14476.1 ID=mRNA_H-elongata_contig6843.14476.1|Name=mRNA_H-elongata_contig6843.14476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3165bp|location=Sequence derived from alignment at H-elongata_contig6843:7331..10495+ (Himanthalia elongata Himel1 dioecious)
GGAGGATCACGTCTGTGATCGTCTGGAGAGGGCCGCGCCTATCGCCGCCG
CCACCGCTCGATGTTTCTCAGCCCGAGAAGACGCATCGATGGTCAAAGGC
CCTTGCGTCCCCGCAGACGGGGACTGCAAGCCCGGACCGGGCGATACTGG
GCCAAAGAGCTCCCGTACGAGGCTGGAATATCTACTCGAAATGGCATGCA
GCTGGGAGGGGAAAAAAGGGGAGAAGAGCGCGGGAGTATCATGCACGACC
CGAGGCGAAACTGACATCAGTGCAGAGGATGGATTTGCCAAACTGAGGGA
AAGATCGCCTCCACCGAAAGATGCTCTGGAATTTCGCAAGGTTGGGGAGG
GCGTCGACCGTGAGAGTGGTGTGGGTGTGAGCGAGAAGGGGACGAAAGGC
TCTTCGGTCAAAGAAAATTATCTTCCAGGCGATAGCGTTGAAGGCATCAA
GAAGGTTTGGGAGACGGGTTTTGCCGAGAGGAGGCAAGATGCCAGAGGAG
GGGAAAGAGCGATGGCCCGGGTTGAGAGGTGCTTGACTCGTTTGGCAAAA
GGAATGCACGGGGAGTTGGAGTTGGAAGAGGCCAAAGAATCCGTGGGGGG
CGGCGGCCGAAGAGGTCAGGAAGGAGACGAGAAACCCGAGGAAGAAGCGG
TAGTAACAGGAGGAAGCATGACGAAACAAATCGTATCGCTTCGTGTTGAC
CGAGCCGAGAAAGAGGTGGTGCTGTCTCGAGCATGGAGGAATAGGGTGCA
GAGGAGGGAAGCGCCTGACGTGGAAGGGTCGGCGGACGGACGAACGGGGG
CGTTGACTAGGCACGAGGAAGTGGGATCGGACGATGAGCTTGCAAACAGC
GATTCGGTAGGACCAAGGCAAGGCCAAGAGTCGACGCCGGAGATGAACAA
CAACGAGAAATTGGAGGAGAATGGACACTCTAGCGAGGGTTGTATCGAAC
AAGGACGGTCTGGAGTGGAGGCGAACCAGCGGTGCGAGCGTGTCGACGTG
CCTCAGAGCTCTTTCCTGGCGCAGAAGGGATATGATGATATTGTTCACTC
CAACCCCACGCCGAGTCCGAATTCGCCAATATCCAGATCGGCGCGGATGC
CTGTTCGTCGGATTCGACGGCCGCTGGCGCCAAAACCAGGATTCGCAGTG
GGAGAGAGACCAAACGGATCGCCGCTGGAACACGGCCGCGACCAAGAGCA
TCTAGCAAGGCCTGTCGAGGAGGAAATGGGTGGAGGTGGGATGCACGAAG
AAGACGATCGGAGTATCTCGGGTGTTTCTGATCGACCTGGCGTGGAAAGT
CCGGACGGAGCGAATGGCCGATGCGGCCAGGGCGAGGATTCGAACCTCGC
CACCCCGATGGCGACCCCGAGGACGCCCACGGCGATTCGGGTGAGAGAAA
GATGGGCCTTTTCGGTTGAGAAGGCGCGCGTTGGGTTTATCACCACTGAA
ACGCGTTTCGATAATTCTCGAAAAAAATGGAGGTCCTTTCCCAGTGCTTT
TGACATCTATCAATAGATACCCCCGTTACCTTGCTGCAGTCACCGGTTGA
ACGTTACCTTCAAGGTTCGTGATATTGCCCCTTTCACCGAATCGGTCATT
TACCCCCCCCCCAAAAGTTCGATCCCTGCCATGTTACAATTTCAAACTTT
CCAGATTTTTCCGACCTGCCTCATCCTCTCTCTCCGAGCAGCGAATCGCC
ACTGCCGATTGGGGCGGTAGCGCTAACAGCTCTGCCGTCGCGCATGACGA
AGAGGAGAGCGTTCCACGCGATCCGTGGGGCGGAGGGAGCTCAAATGAAG
GAAATTTGGGAGCGTACGACGAGATGGACACTCAAGTCCCCAAGCCCCCG
CCGAATTTTATGAGAGTTTACGGCTCGGTTGGCATCACTAGGGTCCGGCG
TTCGATACAGAATTTGTTCGCCCAGCGCCAACCTGCTCTGTGATGGTCCT
TAGACCGACACGTCTATTCTCCCCAATCCTTGCCCCTGGGGGTGGCTGTG
GATAATTTTCCCACGAGGAGGATGATCGCCGAAGACCAGGTCTACTTACT
ACCTCTTTTGGGGGGAGGTTTTTTGCTCTTTTTTACTAGTATCGAGTGCT
TGGAGTCTGAAGTCAAGAGGACAGGGCACGTCGACGTAGTTTGCCTGTTG
TACTGTCGGTGGCCGTTCCTCGGTTGATGCGTATGCCTTCGGTAGGCAGT
ATATTGAAGTGTGCAAGTCGGCTGGCGCACCAGAGATGAGCCAAGGTAGA
GTTACACTTCGGGGGGGATGCGGGGAAAGACGGTGTTACATATCTTTTTA
TAGAAAAAGCACAAGACATTTATAAACACTTTAGGAAAATTCAGAATAAA
CTTTTGAGTTTCACGGCAAGCTTGTGCGGTTGGCCATTGCACGATTATCT
CGCAAGGTTGTACATTGCTTGTTGCAGCGAGTCGAACGAAAGATCTTGCT
CATAGCAACACGTCGATAGCTTGAGGCATATCGCTTCATGTAGAGATGAG
TCACACAATTGCTGTATTAGGAAATGATTATAGTGGGCCGATCGCTGCAG
ATATTTCTTTCGTTTTGGCTTGAAAAGCTTTAAGGCCATGACTGGGATTG
CTCGTAGATCTTGCAACCTCCACACAAGATCCGATTGGCGGATCGAATCG
GATGGAGTCGATGAAGACTAAATTACAATGGCGTGATCCTTCGGGCAAAC
GAGCTTTTTATAGCCGATTTGACACGGTATTTTCCGTGAATTTTACTACT
GACCCGTGTCCAAGGCGGTTTGGTGGTTAGAGCTACTTAAGCTCCTCTCT
GAAAAAGAGTTGACCCTGAATTTCATTTAACGGGTGCTATATAGTTGGTA
TCTAGAGGTTTATATATAGTATATAGAGTCTTATTGTGTTCCGGGAGTCT
AGTTTGTATGACAAGCACCCAAAGATAGAGAAATTTGCGACCAGGGAGGG
AGGGGGGTGGAAGTTTATCGGCGTAGTTTTTAGTGACTCTAAAAAAGAGA
TATTCGACAAAGTTACATTTCGCAATTGTTCCTTATTATGTAACAAAATC
AACATCTATGTTAAATTGTTTACCAATCATCTACCTCCCGCGACGTTGCC
AATCTCGCCTGTGGTCTTGGCACTTCTCCCTGTTCAGTTCTCAGTATTTC
CGCTATACAGTACCT
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Coding sequence (CDS) from alignment at H-elongata_contig6843:7331..10495+

>mRNA_H-elongata_contig6843.14476.1 ID=mRNA_H-elongata_contig6843.14476.1|Name=mRNA_H-elongata_contig6843.14476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3108bp|location=Sequence derived from alignment at H-elongata_contig6843:7331..10495+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAAAGGCCCTTGCGTCCCCGCAGACGGGGACTGCAAGCCCGGACC
GGGCGATACTGGGCCAAAGAGCTCCCGTACGAGGCTGGAATATCTACTCG
AAATGGCATGCAGCTGGGAGGGGAAAAAAGGGGAGAAGAGCGCGGGAGTA
TCATGCACGACCCGAGGCGAAACTGACATCAGTGCAGAGGATGGATTTGC
CAAACTGAGGGAAAGATCGCCTCCACCGAAAGATGCTCTGGAATTTCGCA
AGGTTGGGGAGGGCGTCGACCGTGAGAGTGGTGTGGGTGTGAGCGAGAAG
GGGACGAAAGGCTCTTCGGTCAAAGAAAATTATCTTCCAGGCGATAGCGT
TGAAGGCATCAAGAAGGTTTGGGAGACGGGTTTTGCCGAGAGGAGGCAAG
ATGCCAGAGGAGGGGAAAGAGCGATGGCCCGGGTTGAGAGGTGCTTGACT
CGTTTGGCAAAAGGAATGCACGGGGAGTTGGAGTTGGAAGAGGCCAAAGA
ATCCGTGGGGGGCGGCGGCCGAAGAGGTCAGGAAGGAGACGAGAAACCCG
AGGAAGAAGCGGTAGTAACAGGAGGAAGCATGACGAAACAAATCGTATCG
CTTCGTGTTGACCGAGCCGAGAAAGAGGTGGTGCTGTCTCGAGCATGGAG
GAATAGGGTGCAGAGGAGGGAAGCGCCTGACGTGGAAGGGTCGGCGGACG
GACGAACGGGGGCGTTGACTAGGCACGAGGAAGTGGGATCGGACGATGAG
CTTGCAAACAGCGATTCGGTAGGACCAAGGCAAGGCCAAGAGTCGACGCC
GGAGATGAACAACAACGAGAAATTGGAGGAGAATGGACACTCTAGCGAGG
GTTGTATCGAACAAGGACGGTCTGGAGTGGAGGCGAACCAGCGGTGCGAG
CGTGTCGACGTGCCTCAGAGCTCTTTCCTGGCGCAGAAGGGATATGATGA
TATTGTTCACTCCAACCCCACGCCGAGTCCGAATTCGCCAATATCCAGAT
CGGCGCGGATGCCTGTTCGTCGGATTCGACGGCCGCTGGCGCCAAAACCA
GGATTCGCAGTGGGAGAGAGACCAAACGGATCGCCGCTGGAACACGGCCG
CGACCAAGAGCATCTAGCAAGGCCTGTCGAGGAGGAAATGGGTGGAGGTG
GGATGCACGAAGAAGACGATCGGAGTATCTCGGGTGTTTCTGATCGACCT
GGCGTGGAAAGTCCGGACGGAGCGAATGGCCGATGCGGCCAGGGCGAGGA
TTCGAACCTCGCCACCCCGATGGCGACCCCGAGGACGCCCACGGCGATTC
GGATGGTCAAAGGCCCTTGCGTCCCCGCAGACGGGGACTGCAAGCCCGGA
CCGGGCGATACTGGGCCAAAGAGCTCCCGTACGAGGCTGGAATATCTACT
CGAAATGGCATGCAGCTGGGAGGGGAAAAAAGGGGAGAAGAGCGCGGGAG
TATCATGCACGACCCGAGGCGAAACTGACATCAGTGCAGAGGATGGATTT
GCCAAACTGAGGGAAAGATCGCCTCCACCGAAAGATGCTCTGGAATTTCG
CAAGGTTGGGGAGGGCGTCGACCGTGAGAGTGGTGTGGGTGTGAGCGAGA
AGGGGACGAAAGGCTCTTCGGTCAAAGAAAATTATCTTCCAGGCGATAGC
GTTGAAGGCATCAAGAAGGTTTGGGAGACGGGTTTTGCCGAGAGGAGGCA
AGATGCCAGAGGAGGGGAAAGAGCGATGGCCCGGGTTGAGAGGTGCTTGA
CTCGTTTGGCAAAAGGAATGCACGGGGAGTTGGAGTTGGAAGAGGCCAAA
GAATCCGTGGGGGGCGGCGGCCGAAGAGGTCAGGAAGGAGACGAGAAACC
CGAGGAAGAAGCGGTAGTAACAGGAGGAAGCATGACGAAACAAATCGTAT
CGCTTCGTGTTGACCGAGCCGAGAAAGAGGTGGTGCTGTCTCGAGCATGG
AGGAATAGGGTGCAGAGGAGGGAAGCGCCTGACGTGGAAGGGTCGGCGGA
CGGACGAACGGGGGCGTTGACTAGGCACGAGGAAGTGGGATCGGACGATG
AGCTTGCAAACAGCGATTCGGTAGGACCAAGGCAAGGCCAAGAGTCGACG
CCGGAGATGAACAACAACGAGAAATTGGAGGAGAATGGACACTCTAGCGA
GGGTTGTATCGAACAAGGACGGTCTGGAGTGGAGGCGAACCAGCGGTGCG
AGCGTGTCGACGTGCCTCAGAGCTCTTTCCTGGCGCAGAAGGGATATGAT
GATATTGTTCACTCCAACCCCACGCCGAGTCCGAATTCGCCAATATCCAG
ATCGGCGCGGATGCCTGTTCGTCGGATTCGACGGCCGCTGGCGCCAAAAC
CAGGATTCGCAGTGGGAGAGAGACCAAACGGATCGCCGCTGGAACACGGC
CGCGACCAAGAGCATCTAGCAAGGCCTGTCGAGGAGGAAATGGGTGGAGG
TGGGATGCACGAAGAAGACGATCGGAGTATCTCGGGTGTTTCTGATCGAC
CTGGCGTGGAAAGTCCGGACGGAGCGAATGGCCGATGCGGCCAGGGCGAG
GATTCGAACCTCGCCACCCCGATGGCGACCCCGAGGACGCCCACGGCGAT
TCGGCGAATCGCCACTGCCGATTGGGGCGGTAGCGCTAACAGCTCTGCCG
TCGCGCATGACGAAGAGGAGAGCGTTCCACGCGATCCGTGGGGCGGAGGG
AGCTCAAATGAAGGAAATTTGGGAGCGTACGACGAGATGGACACTCAAGT
CCCCAAGCCCCCGCCGAATTTTATGAGAGTTTACGGCTCGGTTGGCATCA
CTAGGGTCCGGCGTTCGATACAGAATTTGTTCGCCCAGCGCCAACCTGCT
CTGTGACGAATCGCCACTGCCGATTGGGGCGGTAGCGCTAACAGCTCTGC
CGTCGCGCATGACGAAGAGGAGAGCGTTCCACGCGATCCGTGGGGCGGAG
GGAGCTCAAATGAAGGAAATTTGGGAGCGTACGACGAGATGGACACTCAA
GTCCCCAAGCCCCCGCCGAATTTTATGAGAGTTTACGGCTCGGTTGGCAT
CACTAGGGTCCGGCGTTCGATACAGAATTTGTTCGCCCAGCGCCAACCTG
CTCTGTGA
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