mRNA_H-elongata_contig6843.14475.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6843.14475.1
Unique NamemRNA_H-elongata_contig6843.14475.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6843.14475.1 vs. uniprot
Match: A0A6H5JPW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.910e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3 
Query:    6 RNEVLELYVIYQATLLHPLDVPQWTEVFQQTAKRLLAAKPLQSLTKRGRLAVVMSIVGSQRIELFAPTVLAVLACDCHDEWTSLKLLE 269
            R E+ EL+ ++QA LLHPLD  +WT V   T   LL+A+PLQ LTK GRLAV+M IVGS R  LF+P VLAVLACD  D++ S KLL+
Sbjct:   74 RQELEELFTVWQAKLLHPLDRSRWTNVLNTTVASLLSAQPLQCLTKSGRLAVMMCIVGSGRAGLFSPAVLAVLACDWVDDYGSFKLLQ 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6843.14475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPW3_9PHAE4.910e-2459.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6843contigH-elongata_contig6843:2352..4945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_001550.1
Exons5
Model size511
Cds size405
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.287088-UTR-H-elongata_contig6843:2351..23531622931078.287088-UTR-H-elongata_contig6843:2351..2353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6843 2352..2353 +
1691679689.078392-UTR-H-elongata_contig6843:2351..23531691679689.078392-UTR-H-elongata_contig6843:2351..2353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6843 2352..2353 +
1622931078.4023342-UTR-H-elongata_contig6843:4841..49451622931078.4023342-UTR-H-elongata_contig6843:4841..4945Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6843 4842..4945 +
1691679689.1618624-UTR-H-elongata_contig6843:4841..49451691679689.1618624-UTR-H-elongata_contig6843:4841..4945Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6843 4842..4945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.3060744-CDS-H-elongata_contig6843:2353..24941622931078.3060744-CDS-H-elongata_contig6843:2353..2494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 2354..2494 +
1691679689.0924954-CDS-H-elongata_contig6843:2353..24941691679689.0924954-CDS-H-elongata_contig6843:2353..2494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 2354..2494 +
1622931078.3302612-CDS-H-elongata_contig6843:3023..31491622931078.3302612-CDS-H-elongata_contig6843:3023..3149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 3024..3149 +
1691679689.1057203-CDS-H-elongata_contig6843:3023..31491691679689.1057203-CDS-H-elongata_contig6843:3023..3149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 3024..3149 +
1622931078.3531454-CDS-H-elongata_contig6843:3655..37191622931078.3531454-CDS-H-elongata_contig6843:3655..3719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 3656..3719 +
1691679689.1171737-CDS-H-elongata_contig6843:3655..37191691679689.1171737-CDS-H-elongata_contig6843:3655..3719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 3656..3719 +
1622931078.3667047-CDS-H-elongata_contig6843:4264..42881622931078.3667047-CDS-H-elongata_contig6843:4264..4288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 4265..4288 +
1691679689.1314535-CDS-H-elongata_contig6843:4264..42881691679689.1314535-CDS-H-elongata_contig6843:4264..4288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 4265..4288 +
1622931078.3838913-CDS-H-elongata_contig6843:4791..48411622931078.3838913-CDS-H-elongata_contig6843:4791..4841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 4792..4841 +
1691679689.1487694-CDS-H-elongata_contig6843:4791..48411691679689.1487694-CDS-H-elongata_contig6843:4791..4841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6843 4792..4841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6843.14475.1prot_H-elongata_contig6843.14475.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6843 2354..4841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6843.14475.1

>prot_H-elongata_contig6843.14475.1 ID=prot_H-elongata_contig6843.14475.1|Name=mRNA_H-elongata_contig6843.14475.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MRNEVLELYVIYQATLLHPLDVPQWTEVFQQTAKRLLAAKPLQSLTKRGR
LAVVMSIVGSQRIELFAPTVLAVLACDCHDEWTSLKLLEDAVRQSSLSRL
RSLRSEHGQGGVAISNPTGWDVSPNRWCPGAKAN*
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mRNA from alignment at H-elongata_contig6843:2352..4945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6843.14475.1 ID=mRNA_H-elongata_contig6843.14475.1|Name=mRNA_H-elongata_contig6843.14475.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2594bp|location=Sequence derived from alignment at H-elongata_contig6843:2352..4945+ (Himanthalia elongata Himel1 dioecious)
AGATGAGGAACGAAGTCTTGGAGCTGTACGTGATATACCAGGCTACGCTG
TTGCACCCACTGGATGTCCCACAGTGGACGGAGGTCTTTCAACAAACAGC
CAAACGCCTCCTTGCAGCGAAGCCATTGCAATCTCTAACAAAGGTATGTA
ATCGAAGCGACCACCGGGTTGCCTTGGCAGCCTCTGGCATGGTGATGATG
CCCCTTTCTCTTGGCATGGATAGAACAACTCTTTACTCATAAAATGTTTT
CGTGTCACTATTACAGATCTTTTCACGTAACCTTTGGAATTGAGAATGGC
CGAAGGTTCAGTCATTGCCTCCGCCCGGGTGCAGAGGTGAAATAAGTGCT
TCTTGTAAAATGAACGATAGCATCGGAGGTTTCCGGTTTCCACGAGCCCT
CTAGTATCTGTATGTCCGAGCGGACAGCTACAGATCCGTAGATCTCAAGC
TGGATAGGAGGTTGTGTGGCCGCGAGCTATTTAATAGACGGTCGTCGAAG
CAGAGCATCCCGTGAAAAATTGGCGTGTTTCTTAACCCCCGAATCGTGCC
CCGTGGCACGGGCTGGCCTTTCACGTGAAGTTTCCAGAAGGCAGGAAGGC
GTGCACGAAGAGCACAGCATTTCATTGTTGCGGTACGTTTAGTTTGTTTT
TGTTTGTTCCCTTTGTCGGCAGAGAGGGCGTCTAGCCGTGGTTATGAGCA
TCGTCGGGAGTCAAAGGATCGAGCTTTTTGCGCCGACTGTTCTGGCAGTA
CTAGCATGCGACTGCCACGACGAGTGGACGTCCCTCAAGCTCCTTGAGGT
GATCAACAACTATAATAGTGTGTGTATTTGTTTGTGTTTTTGTTTCAGCT
GTAACTGGTACGGGCAATGGCAATGGCAATGGCATAGTGAGGCGATATCT
CGCGCGGCCAAAGACCGCATGCCCTAACCCATGCCCTAACCCGCGAGGTT
AAATGGTTAAACGATGAGCTAATATTATTCGAAGGACGTAAATGCCGCTA
CGGCTCTCTTTTCCTCAGAGAGGGACGAACTCCGTCCAAAGCGAGCTGGT
CTCATTCGTTTCGTGTGTTGCGGTCGTGTTGAAGTGATTGTCCATCGTCG
TCGTCGTCGCTCTCTCGCGTTTGCCTTGTGGAAACGCGATTTTCATGGCG
ACTACACACTAGTATATTATGTATACTATACTAATAATACTATACTAATA
ATACTATACTTGTAATACTATAGCATCGAGGTTGACGAAAATGGACGATC
TTCCTTTCGCCTGGTCATATTTGACTCCTTCCCTTCCTTTCTCTGATTGT
GAAGGACGCAGTGAGACAATCGTCGTTGTCCCGCCTTCGATCCCTTCGAT
CCGAGCACGGCCAAGGGGAAAATAGTGAGGAAGTTCCACGAAATTGGTCC
CGCAAGCTGATGGCTTCCATCCTCGAGGAAGGCGTCAAGTCCACCGTCGC
GCGTTCTTGGAGGACCTTGAAAATCGGGGGTGTCGCTAGGTTTGGCGTGC
TGTATGGTCGACTATTGATATTGATAGGGAATTAACGTAGTATAGTAGTC
AAAGTCGTATCGCTTGCGAGGATCAACAGACATATTTATCATATACACTG
CGTGTATGCTAGTTATCATATACATTGCGTGTATGCTAGTGTAAGTTTGA
TCGATCTTTTCTTGTCTTGGAAACGCGATATACTGTTCTATACCATATTA
TACTCTACTAATGTTACACGGGAAGCTAATGATAATTCTTGTTCTACATT
CAAGATATATTACTAACCGCCACGCCCAACCTGCCCGTGTATGTGTGTGT
GTGCGTGTATGTGTGTGTACCAGAGAGAGGGTGGAGAGGACCGGTAGAGA
GGTCCGGGCGTTAGCGGCGCAATGTCGCGGGGCGGTCAACCGATCGAGGG
CACGCAACCTTTTGTGTGGCTATCTCAAATCCTACAGGTGCGTAACTATC
TCGCTTAAGCGATGCGTCCAGGTTTGGCTTTTCGAAGGTGCGAGTGCTAC
CAGGGATAGAACTAGCGTCGACCAATTCTTGCCGATACCTTGGAAACGCT
TCACTGATGAAGCTGTGTGCCTTGTGTCTTACCAATCTTGAGGAAGAAGA
AACGAAAACTAAATAAGTAAAGCGGTTGCTGCGGGAGATCACCCCACGAG
TTCGTCTTGCCTTAGATGTTAGAACATTCAAAACGTGTCCTCAACAAAGG
GGTCTAGGGAGGGAGAGTTAGGGGGGCGGCGGCGTGTCTTTATCAATGGC
TCACCTAGTGGTAGTATTAAATACCCACTCATTGCCTTGCCTTGCATTGC
CCGTTGCCAAAGTTCACGCTAGCGTAGTAAAGAAATAGGAGCAGAGAGCG
GACATCCCATTCCCACACTACGGTTGGGTTGTTGCCGAGTTTGCGACGCA
CATCACATGAGACACACCGCAAGCCTGCTGCTCGACGCAGGCTGGGATGT
TTCGCCCAATCGCTGGTGTCCTGGGGCCAAGGCGAACTGAAGGTAACGAG
GCCCACCCTGTTCAACGACGCCTTCGACTTTCTCGGTGCTCGATTAGTCG
AGGCCTCCGGCTTCCGCGCGGGTCAGTGGAGAACGACCAACCCG
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Coding sequence (CDS) from alignment at H-elongata_contig6843:2352..4945+

>mRNA_H-elongata_contig6843.14475.1 ID=mRNA_H-elongata_contig6843.14475.1|Name=mRNA_H-elongata_contig6843.14475.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig6843:2352..4945+ (Himanthalia elongata Himel1 dioecious)
ATGAGGAACGAAGTCTTGGAGCTGTACGTGATATACCAGGCTACGCTGTT
GCACCCACTGGATGTCCCACAGTGGACGGAGGTCTTTCAACAAACAGCCA
AACGCCTCCTTGCAGCGAAGCCATTGCAATCTCTAACAAAGATGAGGAAC
GAAGTCTTGGAGCTGTACGTGATATACCAGGCTACGCTGTTGCACCCACT
GGATGTCCCACAGTGGACGGAGGTCTTTCAACAAACAGCCAAACGCCTCC
TTGCAGCGAAGCCATTGCAATCTCTAACAAAGAGAGGGCGTCTAGCCGTG
GTTATGAGCATCGTCGGGAGTCAAAGGATCGAGCTTTTTGCGCCGACTGT
TCTGGCAGTACTAGCATGCGACTGCCACGACGAGTGGACGTCCCTCAAGC
TCCTTGAGAGAGGGCGTCTAGCCGTGGTTATGAGCATCGTCGGGAGTCAA
AGGATCGAGCTTTTTGCGCCGACTGTTCTGGCAGTACTAGCATGCGACTG
CCACGACGAGTGGACGTCCCTCAAGCTCCTTGAGGACGCAGTGAGACAAT
CGTCGTTGTCCCGCCTTCGATCCCTTCGATCCGAGCACGGCCAAGGGGGA
CGCAGTGAGACAATCGTCGTTGTCCCGCCTTCGATCCCTTCGATCCGAGC
ACGGCCAAGGGGGTGTGGCTATCTCAAATCCTACAGGTGTGGCTATCTCA
AATCCTACAGGCTGGGATGTTTCGCCCAATCGCTGGTGTCCTGGGGCCAA
GGCGAACTGAGCTGGGATGTTTCGCCCAATCGCTGGTGTCCTGGGGCCAA
GGCGAACTGA
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