mRNA_H-elongata_contig68390.14468.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68390.14468.1
Unique NamemRNA_H-elongata_contig68390.14468.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68390.14468.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.090e-19
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:    2 REVDLEREMTFCSMDYATGGVCCTELEEAALEATYTAAVDGLSTECADYYKQLLCGVCGSYSGHLYERLVDDLGTNDGLTMKNEYCSGLT 271
            R  D +  + FC    A  G CCT+ EEA ++  +  AV  L+ +C D YKQ++CGVCGSYSGHLYERL  +LG  DG+TMK+++C  LT
Sbjct:   33 RPTDPDEILEFCPE--AQSGACCTDAEEALVQLRHE-AVGNLTGDCDDLYKQVVCGVCGSYSGHLYERLGAELGVLDGMTMKSDFCEELT 119
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BLAST of mRNA_H-elongata_contig68390.14468.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.580e-18
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 2 
Query:    2 REVDLEREMTFCSMDYATGGVCCTELEEAALEATYTAAVD-GL--STECADYYKQLLCGVCGSYSGHLYERLVDDLGTNDGLTMKNEYCSGLTTAC 280
            +  D ++ +T+C    A  G CCT  EE  +EA + AA   G+  ST CA  YKQ++CGVC SYS HLYE L D  G  DGLTMK+E+C  L   C
Sbjct:   26 KPTDYDQVLTYCDNSIAMSGACCTNEEEDIVEANFNAAFGVGVVPSTACAALYKQVVCGVCHSYSAHLYEYLTDG-GMLDGLTMKSEFCEELVDEC 120
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BLAST of mRNA_H-elongata_contig68390.14468.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.240e-8
Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 2 
Query:  155 QLLCGVCGSYSGHLYERLVDDLGTNDGLTMKNEYCSGLTTAC 280
            Q++CGVC SYS HLYE L D  G  DGLTMKNE+C  L  AC
Sbjct:   35 QVVCGVCHSYSAHLYEYLTDG-GMLDGLTMKNEFCESLVDAC 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68390.14468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6T7_ECTSI1.090e-1950.00WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4P3_ECTSI4.580e-1847.92Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5JZF5_9PHAE6.240e-864.29GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68390contigH-elongata_contig68390:186..1082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.6e-15
Seed eggNOG ortholog2880.D7G6T7
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003090.1
Exons2
Model size288
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68390.14468.1prot_H-elongata_contig68390.14468.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68390 186..1057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.545614-CDS-H-elongata_contig68390:185..3141622931077.545614-CDS-H-elongata_contig68390:185..314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68390 186..314 -
1691679688.6733658-CDS-H-elongata_contig68390:185..3141691679688.6733658-CDS-H-elongata_contig68390:185..314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68390 186..314 -
1622931077.5569503-CDS-H-elongata_contig68390:925..10571622931077.5569503-CDS-H-elongata_contig68390:925..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68390 926..1057 -
1691679688.6892478-CDS-H-elongata_contig68390:925..10571691679688.6892478-CDS-H-elongata_contig68390:925..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68390 926..1057 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.5676064-UTR-H-elongata_contig68390:1057..10821622931077.5676064-UTR-H-elongata_contig68390:1057..1082Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68390 1058..1082 -
1691679688.7053385-UTR-H-elongata_contig68390:1057..10821691679688.7053385-UTR-H-elongata_contig68390:1057..1082Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68390 1058..1082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68390.14468.1

>prot_H-elongata_contig68390.14468.1 ID=prot_H-elongata_contig68390.14468.1|Name=mRNA_H-elongata_contig68390.14468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MTFCSMDYATGGVCCTELEEAALEATYTAAVDGLSTECADYYKQLLCGVC
GSYSGHLYERLVDDLGTNDGLTMKNEYCSGLTTACGS
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mRNA from alignment at H-elongata_contig68390:186..1082-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68390.14468.1 ID=mRNA_H-elongata_contig68390.14468.1|Name=mRNA_H-elongata_contig68390.14468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at H-elongata_contig68390:186..1082- (Himanthalia elongata Himel1 dioecious)
GCGAGAGGTCGACCTCGAAAGGGAGATGACGTTTTGTTCTATGGACTACG
CAACCGGAGGCGTCTGCTGCACCGAACTGGAGGAGGCAGCGCTAGAAGCA
ACTTACACTGCTGCGGTCGACGGCCTCAGCACCGAATGTGCCGACTACTA
TAAGCAGGTGCGGGTACATAATGTATATATATATATATATATATATATAT
ATACATATATAAATGTGACACAATGAAAAATACGTCATCAATCTGATTCA
AACGTGACTCCGTTGATTATAACGACGGCGGCTATGATGCGCTCTGCTCG
ATCTTGATGACCTTAGGCGAGAGTAAGTACTAATATAGTAGTATAATGAT
ATAATAGTATCGAACACATAGTATAGTCAACCATTGATGGTTGCTGATCT
ATCACTTTCTCTCGTGAAAGTCCACGTACGGCAGCTCATGGCCTCATATA
ACGGCAGCTCATGGCCTCATATCACCTAATATATACAACCTAGTATATAA
CGCCGCGACGCAATCCAGCAAGGCGCATTGCACGGTCAACGCCGCTTTCT
AGAGCGCTCGTTGGCTTCCCGTGTCGAGCAACCATCCTCACACGCTCAAA
GAGACGGATCGTAGATTGCTATTTATAGTAAAATAGCAGCTGCGCTGGTA
TTGGGTCGAAGCTCAGTAATAAGTTGTGGCGCGGTTGAAGTATACTGCTT
ATTAAGTAAGGGTGGGAGAGGGAAGCCCACGCCGTTACTCTCTTGGGTTT
TGCTCAATTTCCTACCAGTTGCTGTGCGGCGTGTGCGGATCCTACAGCGG
ACACCTTTACGAGCGTCTCGTCGACGACCTCGGAACAAATGACGGCCTGA
CGATGAAGAATGAATACTGTTCGGGACTTACAACAGCCTGCGGTAGT
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Coding sequence (CDS) from alignment at H-elongata_contig68390:186..1082-

>mRNA_H-elongata_contig68390.14468.1 ID=mRNA_H-elongata_contig68390.14468.1|Name=mRNA_H-elongata_contig68390.14468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig68390:186..1082- (Himanthalia elongata Himel1 dioecious)
ATGACGTTTTGTTCTATGGACTACGCAACCGGAGGCGTCTGCTGCACCGA
ACTGGAGGAGGCAGCGCTAGAAGCAACTTACACTGCTGCGGTCGACGGCC
TCAGCACCGAATGTGCCGACTACTATAAGCAGATGACGTTTTGTTCTATG
GACTACGCAACCGGAGGCGTCTGCTGCACCGAACTGGAGGAGGCAGCGCT
AGAAGCAACTTACACTGCTGCGGTCGACGGCCTCAGCACCGAATGTGCCG
ACTACTATAAGCAGTTGCTGTGCGGCGTGTGCGGATCCTACAGCGGACAC
CTTTACGAGCGTCTCGTCGACGACCTCGGAACAAATGACGGCCTGACGAT
GAAGAATGAATACTGTTCGGGACTTACAACAGCCTGCGGTAGTTTGCTGT
GCGGCGTGTGCGGATCCTACAGCGGACACCTTTACGAGCGTCTCGTCGAC
GACCTCGGAACAAATGACGGCCTGACGATGAAGAATGAATACTGTTCGGG
ACTTACAACAGCCTGCGGTAGT
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