mRNA_H-elongata_contig68327.14460.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68327.14460.1
Unique NamemRNA_H-elongata_contig68327.14460.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Match: D7G6D3_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D3_ECTSI)

HSP 1 Score: 526 bits (1355), Expect = 1.840e-176
Identity = 265/319 (83.07%), Postives = 284/319 (89.03%), Query Frame = 1 
Query:    1 MAYRYASFASEQ----KGFKHDADVVYGDTDSVMIKFGCKTVVEAMPLAEKAADEVSKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLLVITKSLGKSADSESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQAAKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDNPSALLHGEHTRTIVKKTPTARVGGIMMFAVKKLQCMGCKIPISKKEKTLCIHCKPTERDIYCAKLRKV 945
            + +R  S+  E      G+ HDADVVYGDTDSVM+KFG KTV EAMPLAEKAA+EVSKIFP PIKLEFEKVYWPYLLMNKKRYAGLLWTKV+KYDKMDTKGLETVRRDNCLLVRKVVDTCLRK+LIDRDVQGAI +SKQVIS+LLQNRMDISLLVITKSLGKSADSE YT+KQAHVELAMRM++RDPGTAPN           AAKGAA YERSEDPVYVLENNLPIDTEYYLTNQL+KPLSRLFEPIIDNPSALLHGEHTR+IVKKTPTAR GGIMMFAVKKL+CMGCK PIS+KEKTLC HC+P E DIY AKLR+V
Sbjct:  733 LLFRTRSYVEETYTVANGYDHDADVVYGDTDSVMVKFGSKTVAEAMPLAEKAAEEVSKIFPRPIKLEFEKVYWPYLLMNKKRYAGLLWTKVDKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKVLIDRDVQGAITYSKQVISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMKKRDPGTAPN-----------AAKGAAAYERSEDPVYVLENNLPIDTEYYLTNQLSKPLSRLFEPIIDNPSALLHGEHTRSIVKKTPTARAGGIMMFAVKKLKCMGCKAPISEKEKTLCAHCRPKEGDIYSAKLREV 1040
[Close]
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Match: A0A7S3XMQ3_HETAK (DNA-directed DNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMQ3_HETAK)

HSP 1 Score: 464 bits (1195), Expect = 4.570e-162
Identity = 224/302 (74.17%), Postives = 261/302 (86.42%), Query Frame = 1 
Query:   40 GFKHDADVVYGDTDSVMIKFGCKTVVEAMPLAEKAADEVSKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLLVITKSLGKSADSESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQAAKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDNPSALLHGEHTRTIVKKTPTARVGGIMMFAVKKLQCMGCKIPISKKEKTLCIHCKPTERDIYCAKLRKV 945
            G+ ++A+VVYGDTDSVM+KFG  TV EAMP+AEKAA+EVSKIFP PI LEFEKVY+PYLLMNKKRYAGLLWT+ EKYDKMDTKGLETVRRDNC LVRK VD+ LRKILIDRDV  AI ++K +I+DLLQN+MDIS LVITKSLG+ ADS+ Y +KQAHVELAMRM++RDPG+APNVGDRVPYVI++AAKGA  YE+SEDPVYVLEN+LPID +YYL  QL+ PL+R+FEPIIDNP AL  G HTR+I K TP A+ GGIMMFAVKKL CMGCK PIS+KEKT C+HC+P E + Y  KL ++
Sbjct:    1 GYPYNAEVVYGDTDSVMVKFGHPTVAEAMPMAEKAAEEVSKIFPRPILLEFEKVYFPYLLMNKKRYAGLLWTRPEKYDKMDTKGLETVRRDNCALVRKCVDSVLRKILIDRDVPSAIEYTKGIIADLLQNKMDISYLVITKSLGRGADSDDYAAKQAHVELAMRMRKRDPGSAPNVGDRVPYVIVKAAKGAPAYEKSEDPVYVLENSLPIDVQYYLDRQLSGPLTRIFEPIIDNPQALFKGAHTRSIAKPTPKAKAGGIMMFAVKKLSCMGCKAPISEKEKTFCVHCRPREAEFYSKKLTEL 302
[Close]
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Match: K8Z648_NANGC (DNA polymerase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z648_NANGC)

HSP 1 Score: 472 bits (1214), Expect = 7.550e-162
Identity = 232/320 (72.50%), Postives = 272/320 (85.00%), Query Frame = 1 
Query:    1 MAYRYASFASE----QKGFKHDADVVYGDTDSVMIKFGCKTVVEAMPLAEKAADEVSKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLLVITKSLGKSADSESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQAAKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDNPSALLHGEHTRTIVKKTPTARVGGIMMFAVKKLQCMGCKIPISKKEK-TLCIHCKPTERDIYCAKLRKV 945
            + Y+  +F  E    +KG   +A+VVYGDTDSVM++FG  TV EAMPLAE+AA+EV+KIFP PIKLEFEKVY+PYLLMNKKRYAGLLWT+ +KYDK+DTKGLETVRRDNCLLVR+V+DTCLRKILIDRDV GAI + K VI++LLQN+MDISLLVITK+LGKSAD   Y +KQAHVELAMRM++RDPGTAPNVGDRV YVIIQA KGA  YERSEDPVYVLEN +PIDT+YYL NQL+ PL+RLFEPIIDNP +LL G+HTR+I + TPTA+ GGIMMFAVKKL+C+GCK PI + EK TLC+HC P E +IY  K  +V
Sbjct:  193 LLYQTKAFVEEHYTIEKGCSANAEVVYGDTDSVMVRFGVPTVEEAMPLAERAAEEVTKIFPPPIKLEFEKVYFPYLLMNKKRYAGLLWTRPDKYDKLDTKGLETVRRDNCLLVRRVIDTCLRKILIDRDVPGAIGYCKHVIAELLQNKMDISLLVITKALGKSADESGYAAKQAHVELAMRMKKRDPGTAPNVGDRVAYVIIQAGKGAPAYERSEDPVYVLENRIPIDTDYYLQNQLSNPLTRLFEPIIDNPESLLSGDHTRSIARPTPTAKAGGIMMFAVKKLKCLGCKTPIPETEKSTLCVHCAPREAEIYTQKALEV 512
[Close]
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Match: A0A7S2UT84_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT84_9STRA)

HSP 1 Score: 461 bits (1187), Expect = 3.650e-160
Identity = 227/305 (74.43%), Postives = 266/305 (87.21%), Query Frame = 1 
Query:   40 GFKHDADVVYGDTDSVMIKFGCKTVVEAMPLAEKAADEVSKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLLVITKSLGKSADSESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQAAKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDNPSALLHGEHTRTIVKKTPTARVGGIMMFAVKKLQCMGCKIPISKKE-----KTLCIHCKPTERDIYCAKLR 939
            GF  +A+VVYGDTDSVM+KFGCK V EAMPLAE+AA+EVS+IFP PI+LEFEKVY+PYLLM KKRYAGLLWT+ E +DKMDTKGLETVRRDNCLLVR+VVDT LRKILI+RDV+ AIAF+K +ISDLLQN+MDISLLVITK+LGKS DSE Y +KQAHVELAMRM++RDPG+AP VGDRV YVIIQAAKGA  YE+SEDPVYVL++NLPIDT+YY+ +QL+KPL+R+FEPIIDNP AL  G+HTRT+ + TPTAR GGIMMFAVKKL+C+GCK P+S K+     KTLC HC+  E  IY  KL+
Sbjct:   67 GFSANAEVVYGDTDSVMVKFGCKDVAEAMPLAERAAEEVSQIFPRPIQLEFEKVYFPYLLMAKKRYAGLLWTRPESHDKMDTKGLETVRRDNCLLVRQVVDTVLRKILIERDVKQAIAFAKGIISDLLQNKMDISLLVITKALGKSGDSEGYAAKQAHVELAMRMKKRDPGSAPQVGDRVAYVIIQAAKGAPAYEKSEDPVYVLDHNLPIDTDYYVHHQLSKPLTRIFEPIIDNPQALFRGDHTRTVARPTPTARAGGIMMFAVKKLKCLGCKTPLSAKDEREGQKTLCEHCRAKEAGIYRQKLK 371
[Close]
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Match: A0A835YQA9_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA9_9STRA)

HSP 1 Score: 476 bits (1226), Expect = 4.890e-158
Identity = 236/296 (79.73%), Postives = 259/296 (87.50%), Query Frame = 1 
Query:   40 GFKHDADVVYGDTDSVMIKFGCKTVVEAMPLAEKAADEVSKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLLVITKSLGKSADSESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQAAKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDNPSALLHGEHTRTIVKKTPTARVGGIMMFA-VKKLQCMGCKIPISKKEKTLCIHCKPTERDIY 924
            G+  DA+VVYGDTDSVM+KFG KTV EAMPLAEKAA+EVSKIFP PIKLEFEKVYWPYLLMNKKRYAGLLWT+ +KYDKMDTKGLETVRRDNC+LVRKVV+TCL KILIDRDV GAIA+SK+VIS LLQ+RMDISLLVITK+L KSAD E YT+KQAHVELAMRM++RDPGTAPNVGDRVPYVII+  KG   YERSEDPVYVLENNLPIDT YYLTNQL KPL+RLFEPII+NP  LL G HTRT+VKKTP AR GGI+MFA VKK +CM CK P+   E TLC HC P E +IY
Sbjct:  661 GYSADAEVVYGDTDSVMVKFGTKTVAEAMPLAEKAAEEVSKIFPRPIKLEFEKVYWPYLLMNKKRYAGLLWTRPDKYDKMDTKGLETVRRDNCMLVRKVVETCLHKILIDRDVDGAIAYSKEVISQLLQDRMDISLLVITKALAKSADMEGYTAKQAHVELAMRMRRRDPGTAPNVGDRVPYVIIEKGKGTPAYERSEDPVYVLENNLPIDTGYYLTNQLAKPLTRLFEPIIENPQTLLAGAHTRTVVKKTPAARKGGIVMFATVKKNKCMACKTPMDDGEGTLCKHCAPREAEIY 956
[Close]
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Match: A0A4D9CSP3_9STRA (DNA polymerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSP3_9STRA)

HSP 1 Score: 444 bits (1143), Expect = 6.790e-144
Identity = 233/385 (60.52%), Postives = 273/385 (70.91%), Query Frame = 1 
Query:    1 MAYRYASFASE----QKGFKHDADVVYGDTDSVMIKFGCKTVVEAMPLAEKAADEV-----------------------------------------------------------------SKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLLVITKSLGKSADSESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQAAKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDNPSALLHGEHTRTIVKKTPTARVGGIMMFAVKKLQCMGCKIPISKKEK-TLCIHCKPTERDIYCAKLRKV 945
            + Y+  +F  E    +KG   +A+VVYGDTDSVM++FG  TV EAMPLAE+AA+EV                                                                 +KIFP PIKLEFEKVY+PYLLMNKKRYAGLLWT+ +KYDK+DTKGLETVRRDNCLLVR+V+DTCLRKILIDRDV GAI + K VI++LLQN+MDISLLVITK+LGKSAD   Y +KQAHVELAMRM++RDPGTAPNVGDRV YVIIQA KGA  YERSEDPVYVLEN +PIDT+YYL NQL+ PL+RLFEPIIDNP +LL G+HTR+I + TPTA+ GGIMMFAVKKL+C+GCK PIS+ EK TLC+HC P E +IY  K  +V
Sbjct:  769 LLYQTKAFVEEHYTIEKGCSANAEVVYGDTDSVMVRFGVPTVEEAMPLAERAAEEVGEGGRGRMGQGVCGGCSRRGSLCGALSESSTPGSPPHRSAPRRSPSQGPLLVTSPSPLPFRHPQVTKIFPPPIKLEFEKVYFPYLLMNKKRYAGLLWTRPDKYDKLDTKGLETVRRDNCLLVRRVIDTCLRKILIDRDVPGAIGYCKHVIAELLQNKMDISLLVITKALGKSADESGYAAKQAHVELAMRMKKRDPGTAPNVGDRVAYVIIQAGKGAPAYERSEDPVYVLENRIPIDTDYYLQNQLSNPLTRLFEPIIDNPESLLSGDHTRSIARPTPTAKAGGIMMFAVKKLKCLGCKTPISETEKSTLCVHCAPREAEIYTQKALEV 1153
[Close]
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Match: A0A7S2MCL7_9STRA (DNA-directed DNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MCL7_9STRA)

HSP 1 Score: 406 bits (1043), Expect = 2.710e-139
Identity = 199/277 (71.84%), Postives = 233/277 (84.12%), Query Frame = 1 
Query:  124 MPLAEKAADEVSKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLLVITKSLGKS---ADSESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQAAKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDNPSALLHGEHTRTIVKKTPTARVGGIMMFAVKKLQCMGCKIPISKKEKTLCIHCKPTERDIYCAKLRKV 945
            MPLAE+AA EV+K FP PI LEFEKVYWPYLLMNKKRYAGLLWT+ EKYDKMDTKGLETVRRDNCLLVR+++ TCL KILIDRDV GAI ++K  I+DLLQN++DISLLV++KSL KS   +D  +Y +KQAHVELA+RM++RD G+AP +GDRVPYVIIQ AKGA +YE+SEDPVY LENNLP+D EYYL NQL+KPL+R+FEPI+DN + LL G+HTR + K TPTAR GGIMMFAVK LQC+GC+ PIS KEKTLC  C P E +IY  K  KV
Sbjct:    4 MPLAEQAAAEVTKQFPSPICLEFEKVYWPYLLMNKKRYAGLLWTRPEKYDKMDTKGLETVRRDNCLLVRQLIQTCLVKILIDRDVAGAINYAKSTIADLLQNKLDISLLVVSKSLSKSMDDSDKNTYKAKQAHVELALRMKKRDAGSAPQMGDRVPYVIIQKAKGAPMYEKSEDPVYALENNLPLDVEYYLHNQLSKPLTRIFEPIVDNVNTLLKGDHTRVVCKPTPTARKGGIMMFAVKTLQCLGCRTPISDKEKTLCRKCVPLEGEIYMQKAAKV 280
[Close]
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Match: F0Y3Y2_AURAN (DNA polymerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3Y2_AURAN)

HSP 1 Score: 421 bits (1083), Expect = 2.050e-136
Identity = 205/306 (66.99%), Postives = 245/306 (80.07%), Query Frame = 1 
Query:   28 SEQKGFKHDADVVYGDTDSVMIKFGCKTVVEAMPLAEKAADEVSKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLLVITKSLGKSADSESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQAAKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDNPSALLHGEHTRTIVKKTPTARVGGIMMFAVKKLQCMGCKIPISKKEKTLCIHCKPTERDIYCAKLRKV 945
            +++ G+  DA+VVYGDTDSVM+ FG   V   +P AE  A EV+KIFP P+KLEFEKVY+PYLLMNKKRYAGLLWT+ E +D MD KGLETVRRDNCLLVR+++D CLRKI+I+RD   AIA++K+ I DLLQN++DISLLVITKSL K ADS+ Y +K  H ELA RM+ RDPGTAPNVGDRVPYVI+QA KG A Y++SEDPVYVLENNLPID  YYL NQL+KPL+R+FEPII N S LLHG+HTR + K TP AR GGIMMFA K+LQC+GCK  I   E T+C HCKP E +I+  ++R V
Sbjct:  695 TKENGYAADAEVVYGDTDSVMVNFGFGDVAATLPKAEVVAAEVTKIFPPPVKLEFEKVYFPYLLMNKKRYAGLLWTRPETHDYMDCKGLETVRRDNCLLVRQLIDGCLRKIIIERDTNAAIAYAKRAIGDLLQNKIDISLLVITKSLSKEADSKDYKAKSGHAELAKRMRARDPGTAPNVGDRVPYVIVQAPKGTATYDKSEDPVYVLENNLPIDASYYLENQLSKPLTRIFEPIIPNTSNLLHGDHTRVVAKPTPVARKGGIMMFAKKQLQCLGCKAKID--EGTVCDHCKPREPEIFLKRVRDV 998
[Close]
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Match: A0A1E7FQS1_9STRA (DNA polymerase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQS1_9STRA)

HSP 1 Score: 404 bits (1037), Expect = 8.940e-130
Identity = 204/308 (66.23%), Postives = 240/308 (77.92%), Query Frame = 1 
Query:   40 GFKHDADVVYGDTDSVMIKFGCKTVVEAMPLAEKAADEVSKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLLVITKSLGKSAD--------SESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQAAKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDN-PSALLHGEHTRTIVKKTPTARVGGIMMFAVKKLQCMGCKIPISKKEKTLCIHCKPTERDIYCAKL 936
            G+++DA VVYGDTDSVM+KFG KTV E  PLA +AA+  SKIFP PI LEFEKVY+PYLLMNKKRYAG++WT+ +KYDKMD KGLETVRRDNC LVR+V+ T L KILID+DVQGAI + K  ISDLLQN+MDIS LVITKSL K AD         E Y  KQAHVELA RMQ+RD GTAP +GDRVPYVII  AKGA  YER EDP+YVLEN+L +D ++YLTNQL+KPL+R+FEPIID+   +LL GEHTR I   TP AR G +MMFAVK  +C+GC+ P+S ++  LC HC P E +IY  KL
Sbjct:  672 GYQYDAQVVYGDTDSVMVKFGNKTVEETFPLAIEAAERCSKIFPNPILLEFEKVYFPYLLMNKKRYAGIMWTRPDKYDKMDAKGLETVRRDNCALVREVIQTSLDKILIDQDVQGAIDYVKSQISDLLQNKMDISRLVITKSLNKGADYALGLGGKKEDYKMKQAHVELAARMQKRDAGTAPQMGDRVPYVIITGAKGAKTYERGEDPIYVLENSLALDCKWYLTNQLSKPLTRIFEPIIDDVEKSLLQGEHTRKIFIPTPIARKGSLMMFAVKTAKCLGCRAPVSSQDGHLCKHCVPKEAEIYLGKL 979
[Close]
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Match: A0A7S1VUB6_9STRA (DNA polymerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VUB6_9STRA)

HSP 1 Score: 396 bits (1018), Expect = 1.150e-129
Identity = 200/308 (64.94%), Postives = 240/308 (77.92%), Query Frame = 1 
Query:   40 GFKHDADVVYGDTDSVMIKFGCKTVVEAMPLAEKAADEVSKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLETVRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLLVITKSLGKSAD--------SESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQAAKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDNPSA-LLHGEHTRTIVKKTPTARVGGIMMFAVKKLQCMGCKIPISKKEKTLCIHCKPTERDIYCAKL 936
            G+K DA VVYGDTDSVM+KFG +TV +  PLA +AAD+ SKIFP PI LEFEKVY+PYLLMNKKRYAGL+WT+V+K+DKMD KGLETVRRDNC LVR V+ T L KILI++DV GAIAF KQ ISDLLQN+MDIS LVITKSL K A+         E Y  +QAHVELA RM++RD G+AP +GDRVPYVI+  AKGAA YE+ EDP+YVL++N+PID ++YL+NQL+KPL+R++EPII+N    LL GEHTR I   TPTAR G + MFAVKK  C+GCK+PI   +  LC  C P E +IY  KL
Sbjct:  407 GYKCDAQVVYGDTDSVMVKFGTETVADTFPLAIEAADQCSKIFPKPILLEFEKVYYPYLLMNKKRYAGLMWTQVDKHDKMDAKGLETVRRDNCQLVRDVIQTSLHKILIEQDVNGAIAFVKQQISDLLQNKMDISQLVITKSLNKGAEYALGLGGKKEDYKVRQAHVELAARMKKRDAGSAPQMGDRVPYVIVTGAKGAANYEKGEDPIYVLDHNIPIDAKWYLSNQLSKPLTRIYEPIIENVEKNLLQGEHTRKIFIPTPTARKGSLAMFAVKKATCLGCKVPIESNKGFLCKFCLPREGEIYLEKL 714
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68327.14460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D3_ECTSI1.840e-17683.07DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S3XMQ3_HETAK4.570e-16274.17DNA-directed DNA polymerase n=1 Tax=Heterosigma ak... [more]
K8Z648_NANGC7.550e-16272.50DNA polymerase n=1 Tax=Nannochloropsis gaditana (s... [more]
A0A7S2UT84_9STRA3.650e-16074.43DNA-directed DNA polymerase (Fragment) n=1 Tax=Fib... [more]
A0A835YQA9_9STRA4.890e-15879.73DNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A4D9CSP3_9STRA6.790e-14460.52DNA polymerase n=3 Tax=Monodopsidaceae TaxID=42507... [more]
A0A7S2MCL7_9STRA2.710e-13971.84DNA-directed DNA polymerase n=1 Tax=Dictyocha spec... [more]
F0Y3Y2_AURAN2.050e-13666.99DNA polymerase n=1 Tax=Aureococcus anophagefferens... [more]
A0A1E7FQS1_9STRA8.940e-13066.23DNA polymerase n=1 Tax=Fragilariopsis cylindrus CC... [more]
A0A7S1VUB6_9STRA1.150e-12964.94DNA polymerase n=1 Tax=Grammatophora oceanica TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68327contigH-elongata_contig68327:331..2305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score524.2
Seed ortholog evalue4.1e-146
Seed eggNOG ortholog2880.D7G6D3
KEGG rclassRC02795
KEGG koko:K02327
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00262
GOsGO:0000228,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0030894,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA replication proofreading
EggNOG OGsCOG0417@1,KOG0969@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons7
Model size945
Cds size945
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.623124-CDS-H-elongata_contig68327:330..5281622931076.623124-CDS-H-elongata_contig68327:330..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 331..528 +
1691679688.2402802-CDS-H-elongata_contig68327:330..5281691679688.2402802-CDS-H-elongata_contig68327:330..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 331..528 +
1622931076.6413262-CDS-H-elongata_contig68327:784..9191622931076.6413262-CDS-H-elongata_contig68327:784..919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 785..919 +
1691679688.25157-CDS-H-elongata_contig68327:784..9191691679688.25157-CDS-H-elongata_contig68327:784..919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 785..919 +
1622931076.6596777-CDS-H-elongata_contig68327:1059..11311622931076.6596777-CDS-H-elongata_contig68327:1059..1131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 1060..1131 +
1691679688.2675588-CDS-H-elongata_contig68327:1059..11311691679688.2675588-CDS-H-elongata_contig68327:1059..1131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 1060..1131 +
1622931076.6771688-CDS-H-elongata_contig68327:1292..14841622931076.6771688-CDS-H-elongata_contig68327:1292..1484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 1293..1484 +
1691679688.2766075-CDS-H-elongata_contig68327:1292..14841691679688.2766075-CDS-H-elongata_contig68327:1292..1484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 1293..1484 +
1622931076.6911058-CDS-H-elongata_contig68327:1606..17351622931076.6911058-CDS-H-elongata_contig68327:1606..1735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 1607..1735 +
1691679688.2851312-CDS-H-elongata_contig68327:1606..17351691679688.2851312-CDS-H-elongata_contig68327:1606..1735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 1607..1735 +
1622931076.710289-CDS-H-elongata_contig68327:1871..19881622931076.710289-CDS-H-elongata_contig68327:1871..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 1872..1988 +
1691679688.2937062-CDS-H-elongata_contig68327:1871..19881691679688.2937062-CDS-H-elongata_contig68327:1871..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 1872..1988 +
1622931076.7245886-CDS-H-elongata_contig68327:2203..23051622931076.7245886-CDS-H-elongata_contig68327:2203..2305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 2204..2305 +
1691679688.3018568-CDS-H-elongata_contig68327:2203..23051691679688.3018568-CDS-H-elongata_contig68327:2203..2305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68327 2204..2305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68327.14460.1prot_H-elongata_contig68327.14460.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68327 331..2305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68327.14460.1

>prot_H-elongata_contig68327.14460.1 ID=prot_H-elongata_contig68327.14460.1|Name=mRNA_H-elongata_contig68327.14460.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=315bp
MAYRYASFASEQKGFKHDADVVYGDTDSVMIKFGCKTVVEAMPLAEKAAD
EVSKIFPGPIKLEFEKVYWPYLLMNKKRYAGLLWTKVEKYDKMDTKGLET
VRRDNCLLVRKVVDTCLRKILIDRDVQGAIAFSKQVISDLLQNRMDISLL
VITKSLGKSADSESYTSKQAHVELAMRMQQRDPGTAPNVGDRVPYVIIQA
AKGAAVYERSEDPVYVLENNLPIDTEYYLTNQLNKPLSRLFEPIIDNPSA
LLHGEHTRTIVKKTPTARVGGIMMFAVKKLQCMGCKIPISKKEKTLCIHC
KPTERDIYCAKLRKV
back to top

mRNA from alignment at H-elongata_contig68327:331..2305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68327.14460.1 ID=mRNA_H-elongata_contig68327.14460.1|Name=mRNA_H-elongata_contig68327.14460.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1975bp|location=Sequence derived from alignment at H-elongata_contig68327:331..2305+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTACCGGTATGCTTCTTTCGCTTCTGAACAGAAAGGATTCAAACA
CGACGCCGATGTGGTGTACGGGGATACGGATTCCGTGATGATTAAGTTCG
GCTGCAAAACGGTGGTGGAGGCCATGCCGCTCGCAGAGAAAGCTGCTGAT
GAAGTGTCCAAAATCTTCCCTGGACCCATCAAGCTAGAGTTCGAGAAGGT
ATATTTGGTTAAAGAGCTGAAGTTTATGCGACAATGTTTTGGCATATTTC
AATCTTGCGCGACCGGTCGATGTAACTTAAAACTGCCTATGTCACGTTCT
TCACCTTCTCCAAGACAAAAAAAGCGTTCTTGGGCGAGATGTCCGCGATC
TCGCTTCTAGTCATCAAAAGCGAGTCATGATCGATCAAAAGGTGCAAGCA
GGCACGCAATCAAGTCACAAGCCGGTTTCATGCTTCCCCTTTTTCATCTT
TTAGGTGTACTGGCCTTACCTCTTGATGAACAAAAAGCGTTACGCGGGTT
TGCTGTGGACGAAGGTGGAGAAGTACGACAAGATGGATACCAAAGGCCTT
GAGACGGTCCGACGCGACAATTGCCTACTCGTTCGGAAGGTGACGGCGCT
CACAGTCGGCATGATAGATAATCCTACTTCTCGCGGAGTTATGTGACCTC
CATTTGCCGTGCCAGGTTGGTCTACTGTAGTTTCTCCAAACCAATTCGGG
TTCTGTCCTTATTACATTGACATTTGCAGGTGGTGGACACTTGTCTGCGG
AAGATCCTGATAGACAGGGATGTGCAGGGTGCGATCGCGTTCTCCAAGCA
GGTATAGTCTGGATTCGGGGCAAGGACAAATAATGTTCATTTTCTCGACG
TTTCTTCTTTCGGACTAGGCGGGCGCTTCCTTTGGATTCACGCCCTCTTT
CATCCTGCAAAGAAGTACTTCGTGGTTCCTGATGAGCAGTTGGTTGGTTG
AATGCTCCACAGGTGATCTCAGACCTCCTGCAGAACAGGATGGATATTTC
TCTCCTCGTGATAACGAAGTCGCTAGGAAAGAGCGCAGACAGCGAGAGCT
ACACCTCGAAGCAGGCACACGTGGAGCTCGCAATGCGTATGCAGCAGCGT
GACCCTGGAACAGCTCCCAACGTGGGGGATCGTGTGCCATACGTAATCAT
CCAGGTTTGTGGAAATCTTTGGAGATCGTGTGCCTACGGTTCCGGTACAT
TATCCCATCATTCTATCAAGCGCGTACCTTTTTTGACACCGTGCGAACGC
GGTGCATTTACTGCTTTGAACAACAGGCCGCCAAGGGCGCTGCAGTGTAC
GAACGCAGCGAGGATCCCGTGTACGTGCTAGAGAACAATCTTCCCATCGA
CACCGAGTATTACCTCACCAACCAGCTAAACAAGCCGCTCAGCCGCCTGT
TTGAGGTACGCCGGATTTATTTTCCTCCGGGATTTGGGGAATTTGATCGC
CATGGTTGGAGATCAACATTCCCACCCCTGTCCGAGTGCTCATGGACTTA
ATGCAAATCACTACCATGGCGTTATATTTTTGCAATCGCAGCCTATTATC
GACAACCCGTCGGCCCTCTTGCACGGGGAACACACGCGGACAATCGTAAA
GAAAACACCGACAGCACGTGTTGGTGGCATCATGATGTTCGCGGTCAAGA
AGCTTCAGGTCAGGCAGAGCTGGTTTTGCTACATCGCGTCCCCAGCTCAA
GTATCTTTCGTAAAGCTATCATTACATGCATCGCGGGCTTGGCTTCGACT
CCCCTCCTTCGTTGTGTACACGTATAAACAGTTTGACTAGAATCTCCATT
AAGTAAAAAGGAATGCAAATTACAGCAAACGACACAATTACCACGATGCA
CGGCCTCAAAACCTCTTGCGCAGTGCATGGGGTGTAAGATACCCATCAGC
AAGAAGGAGAAGACTCTATGCATACACTGCAAGCCCACAGAGAGAGACAT
CTACTGCGCAAAGCTTAGGAAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig68327:331..2305+

>mRNA_H-elongata_contig68327.14460.1 ID=mRNA_H-elongata_contig68327.14460.1|Name=mRNA_H-elongata_contig68327.14460.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at H-elongata_contig68327:331..2305+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTACCGGTATGCTTCTTTCGCTTCTGAACAGAAAGGATTCAAACA
CGACGCCGATGTGGTGTACGGGGATACGGATTCCGTGATGATTAAGTTCG
GCTGCAAAACGGTGGTGGAGGCCATGCCGCTCGCAGAGAAAGCTGCTGAT
GAAGTGTCCAAAATCTTCCCTGGACCCATCAAGCTAGAGTTCGAGAAGAT
GGCGTACCGGTATGCTTCTTTCGCTTCTGAACAGAAAGGATTCAAACACG
ACGCCGATGTGGTGTACGGGGATACGGATTCCGTGATGATTAAGTTCGGC
TGCAAAACGGTGGTGGAGGCCATGCCGCTCGCAGAGAAAGCTGCTGATGA
AGTGTCCAAAATCTTCCCTGGACCCATCAAGCTAGAGTTCGAGAAGGTGT
ACTGGCCTTACCTCTTGATGAACAAAAAGCGTTACGCGGGTTTGCTGTGG
ACGAAGGTGGAGAAGTACGACAAGATGGATACCAAAGGCCTTGAGACGGT
CCGACGCGACAATTGCCTACTCGTTCGGAAGGTGTACTGGCCTTACCTCT
TGATGAACAAAAAGCGTTACGCGGGTTTGCTGTGGACGAAGGTGGAGAAG
TACGACAAGATGGATACCAAAGGCCTTGAGACGGTCCGACGCGACAATTG
CCTACTCGTTCGGAAGGTGGTGGACACTTGTCTGCGGAAGATCCTGATAG
ACAGGGATGTGCAGGGTGCGATCGCGTTCTCCAAGCAGGTGGTGGACACT
TGTCTGCGGAAGATCCTGATAGACAGGGATGTGCAGGGTGCGATCGCGTT
CTCCAAGCAGGTGATCTCAGACCTCCTGCAGAACAGGATGGATATTTCTC
TCCTCGTGATAACGAAGTCGCTAGGAAAGAGCGCAGACAGCGAGAGCTAC
ACCTCGAAGCAGGCACACGTGGAGCTCGCAATGCGTATGCAGCAGCGTGA
CCCTGGAACAGCTCCCAACGTGGGGGATCGTGTGCCATACGTAATCATCC
AGGTGATCTCAGACCTCCTGCAGAACAGGATGGATATTTCTCTCCTCGTG
ATAACGAAGTCGCTAGGAAAGAGCGCAGACAGCGAGAGCTACACCTCGAA
GCAGGCACACGTGGAGCTCGCAATGCGTATGCAGCAGCGTGACCCTGGAA
CAGCTCCCAACGTGGGGGATCGTGTGCCATACGTAATCATCCAGGCCGCC
AAGGGCGCTGCAGTGTACGAACGCAGCGAGGATCCCGTGTACGTGCTAGA
GAACAATCTTCCCATCGACACCGAGTATTACCTCACCAACCAGCTAAACA
AGCCGCTCAGCCGCCTGTTTGAGGCCGCCAAGGGCGCTGCAGTGTACGAA
CGCAGCGAGGATCCCGTGTACGTGCTAGAGAACAATCTTCCCATCGACAC
CGAGTATTACCTCACCAACCAGCTAAACAAGCCGCTCAGCCGCCTGTTTG
AGCCTATTATCGACAACCCGTCGGCCCTCTTGCACGGGGAACACACGCGG
ACAATCGTAAAGAAAACACCGACAGCACGTGTTGGTGGCATCATGATGTT
CGCGGTCAAGAAGCTTCAGCCTATTATCGACAACCCGTCGGCCCTCTTGC
ACGGGGAACACACGCGGACAATCGTAAAGAAAACACCGACAGCACGTGTT
GGTGGCATCATGATGTTCGCGGTCAAGAAGCTTCAGTGCATGGGGTGTAA
GATACCCATCAGCAAGAAGGAGAAGACTCTATGCATACACTGCAAGCCCA
CAGAGAGAGACATCTACTGCGCAAAGCTTAGGAAGGTGTGCATGGGGTGT
AAGATACCCATCAGCAAGAAGGAGAAGACTCTATGCATACACTGCAAGCC
CACAGAGAGAGACATCTACTGCGCAAAGCTTAGGAAGGTG
back to top