mRNA_H-elongata_contig68318.14459.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68318.14459.1
Unique NamemRNA_H-elongata_contig68318.14459.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68318.14459.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 5.310e-9
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 VNALEEQRKFLPLAELEPQLWYAPFPASAYHGMIDAQEEV 120
            V AL  Q+++LPLAELEPQLWY  FPASAY  M+ AQEE+
Sbjct: 1018 VCALALQKRYLPLAELEPQLWYEAFPASAYQDMVAAQEEL 1057
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68318.14459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD61_ECTSI5.310e-967.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68318contigH-elongata_contig68318:2709..2834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.5772943-CDS-H-elongata_contig68318:2708..28341622931076.5772943-CDS-H-elongata_contig68318:2708..2834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68318 2709..2834 +
1691679688.2303212-CDS-H-elongata_contig68318:2708..28341691679688.2303212-CDS-H-elongata_contig68318:2708..2834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68318 2709..2834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68318.14459.1prot_H-elongata_contig68318.14459.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68318 2709..2834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68318.14459.1

>prot_H-elongata_contig68318.14459.1 ID=prot_H-elongata_contig68318.14459.1|Name=mRNA_H-elongata_contig68318.14459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
VNALEEQRKFLPLAELEPQLWYAPFPASAYHGMIDAQEEVSY
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mRNA from alignment at H-elongata_contig68318:2709..2834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68318.14459.1 ID=mRNA_H-elongata_contig68318.14459.1|Name=mRNA_H-elongata_contig68318.14459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig68318:2709..2834+ (Himanthalia elongata Himel1 dioecious)
GTGAACGCTCTGGAGGAACAGAGAAAATTTTTGCCCCTGGCGGAGCTAGA
GCCGCAGCTCTGGTACGCGCCGTTCCCCGCCTCTGCGTACCACGGGATGA
TCGATGCCCAAGAGGAGGTAAGCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig68318:2709..2834+

>mRNA_H-elongata_contig68318.14459.1 ID=mRNA_H-elongata_contig68318.14459.1|Name=mRNA_H-elongata_contig68318.14459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig68318:2709..2834+ (Himanthalia elongata Himel1 dioecious)
GTGAACGCTCTGGAGGAACAGAGAAAATTTTTGCCCCTGGCGGAGCTAGA
GCCGCAGCTCTGGTACGCGCCGTTCCCCGCCTCTGCGTACCACGGGATGA
TCGATGCCCAAGAGGAGGTAAGCTACGTGAACGCTCTGGAGGAACAGAGA
AAATTTTTGCCCCTGGCGGAGCTAGAGCCGCAGCTCTGGTACGCGCCGTT
CCCCGCCTCTGCGTACCACGGGATGATCGATGCCCAAGAGGAGGTAAGCT
AC
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