mRNA_H-elongata_contig68318.14458.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68318.14458.1
Unique NamemRNA_H-elongata_contig68318.14458.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68318.14458.1 vs. uniprot
Match: A0A6H5K0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H2_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 7.100e-35
Identity = 72/97 (74.23%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    1 VAITCFFRNSATFAYPARVAAFTAVVIFTGSNSVLGADGEVVSLARIVNTVMGSLIYLFVDILLVPTRAKVLLYEQTYLSLDAALKEVTINDERLFG 291
            VA+TCFFRNS+ F+Y A VAAFTAVVIFT S++VLGA+GE VSLARIVNTV+GS++YL VD+LLVPTRAK LL EQ YLSLDAA +E++IN ER+FG
Sbjct:   50 VAVTCFFRNSSQFSYAALVAAFTAVVIFTSSSTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLVPTRAKNLLLEQIYLSLDAAFRELSINGERMFG 146
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BLAST of mRNA_H-elongata_contig68318.14458.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.940e-29
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:    1 VAITCFFRNSATFAYPARVAAFTAVVIFTGSNSVLGADGEVVSLARIVNTVMGSLIYLFVDILLVPTRAKVLLYEQTYLSLDAALKE 261
            VA+TCFFRNS+ F+Y A VAAFTAVVIFT SN+VLGA+GE VSLARIVNTV+GS++YL VD+LL PTRAK L+ EQ YLSLDAA +E
Sbjct:  812 VAVTCFFRNSSQFSYAALVAAFTAVVIFTSSNTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLAPTRAKNLVLEQIYLSLDAAFRE 898
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68318.14458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0H2_9PHAE7.100e-3574.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD61_ECTSI1.940e-2974.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68318contigH-elongata_contig68318:86..1884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size348
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68318.14458.1prot_H-elongata_contig68318.14458.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68318 86..1884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.5002007-CDS-H-elongata_contig68318:85..2781622931076.5002007-CDS-H-elongata_contig68318:85..278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68318 86..278 +
1691679688.196939-CDS-H-elongata_contig68318:85..2781691679688.196939-CDS-H-elongata_contig68318:85..278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68318 86..278 +
1622931076.5186462-CDS-H-elongata_contig68318:1555..16231622931076.5186462-CDS-H-elongata_contig68318:1555..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68318 1556..1623 +
1691679688.2078996-CDS-H-elongata_contig68318:1555..16231691679688.2078996-CDS-H-elongata_contig68318:1555..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68318 1556..1623 +
1622931076.5309885-CDS-H-elongata_contig68318:1797..18841622931076.5309885-CDS-H-elongata_contig68318:1797..1884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68318 1798..1884 +
1691679688.220813-CDS-H-elongata_contig68318:1797..18841691679688.220813-CDS-H-elongata_contig68318:1797..1884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68318 1798..1884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68318.14458.1

>prot_H-elongata_contig68318.14458.1 ID=prot_H-elongata_contig68318.14458.1|Name=mRNA_H-elongata_contig68318.14458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
VAITCFFRNSATFAYPARVAAFTAVVIFTGSNSVLGADGEVVSLARIVNT
VMGSLIYLFVDILLVPTRAKVLLYEQTYLSLDAALKEVTINDERLFGVRA
SSRECPRQLAKRLRLS
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mRNA from alignment at H-elongata_contig68318:86..1884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68318.14458.1 ID=mRNA_H-elongata_contig68318.14458.1|Name=mRNA_H-elongata_contig68318.14458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1799bp|location=Sequence derived from alignment at H-elongata_contig68318:86..1884+ (Himanthalia elongata Himel1 dioecious)
GTGGCCATCACGTGCTTTTTCCGAAACAGCGCGACGTTCGCCTATCCGGC
TCGCGTGGCCGCCTTCACCGCAGTGGTAATCTTTACGGGGTCCAATAGCG
TGCTCGGCGCCGACGGGGAGGTCGTGTCGCTGGCCCGTATCGTCAACACC
GTCATGGGCAGTCTCATCTACCTCTTCGTCGACATACTCCTAGGTCGGCC
TCTCTCACCGCGAGTCTCTAAGCCACGATCCCATGTCGTCCTATTTTTTT
TCCCTTGCTCCGGTTTGTCTATCATTTTTGACACGTTTCTTCGTTCCGTT
TTATTTCGCGATTTCGAAATATTTCTTCCTTTCTTACGTGTCTTAGTTCC
GTTATGTTTTCTTGTTCCGTTCCATTTCCCCACCTCGCGTCCGGGTTTGG
TTCCGCTAGGTTCCATTCTCAGCGTATCGAAGCCATGATGTTATCTATAA
CATCCAGCAGCTCTTGTTAGTAGGTTTGTTGTGGGTTGCGCCTGCGGCCG
GGTCATAATGTCTGTGTGCGCGCTAAACTTCCCGGGTTGAACTGCCAACA
TTGCCCTAGGCCATTTTATCTTTATCGCTTAGAGAGTGCTGTCCTCCCTA
CTTCTTAGATGGAATGCGGTAGTATGGACAACGCCAGCGTTGCCCCTTCC
CCCCTCTCCTCCCCCCGAGGTCGCGTGGTCAATGCTAATGGTCTAACAGC
TAAGGCATGAAAAACTTGAGGGTGATCTCCTCGCCCCCCCCATCCCCCTC
CCGGGTTGACTTTTGTATATTTTCTTGTGTCATGAAGCTTTCAAAGTACT
ACCGTGTATAGAACATGGGGGACTTAATTCATGCAGTGTGTACGGTGAGC
TCAGAGAACTCCGCCCAAGAGTCTTGTCTTCATCCAAAAGGGTGAAACGG
ATCACATTCTATGTGATGTCCGCTGAACAGTAGTTGATTGTTGGAAAGCC
CTTACGAGAGTACTCTGCCAGGATTATGGCCCGAGTGTATCACACGTATA
CCATTTGTCTGTGTGATGCACGTGCGGCGCTTATGTGTTCGCGTTCGTGC
TGAGATCAAAATCTCTAAGCGGTGCTTGGAGTATAGCCACGCCCGCTGAA
TGTGCAATATATGGCTACCCAGTGCGTTTAATTAGCCCATGTGATGTAGG
GTTTGGCGTAGCAAGCGCAAGTATGATATTAAAAGCTGGCGTCATCACAT
AGCTCCGTTCCGGCATTGTTCGGATGCGTGGTATGGACAATATCCATCAG
GATACGACATGCGTTTAGCACAATGACACCCCTTTTCCTGCCCCTTCCCC
ACTCAAAATGAAGCTCGTGTATGCTTCTGTAGAACATCTTATTTCCTTTG
AGCTAGCTTCGTCTACAATCCAACGCTTCCGTCCCGTCCCGTCGCAGACC
AGTTCCGTATGAAGTGAAGTGACATATTTCTTTTTTTTTCTTTTTCTTTC
TTTCCCCCTCTTCTCGACAGTGCCCACCCGTGCAAAAGTTCTGCTTTATG
AGCAGACGTACCTGTCCCTCGATGCAGCTCTCAAAGAGGTGGGTAACGTA
TATGCAGTTCGCTTTGTCTTTACGTGTGTGGCTATGTATGCATCTCAAGC
CTATGCATATAATTTATGTACAAATATATGCCTTATGTATTTACGTTTCT
TTTTATCCACCACGGCAACGGCGTAATCCCTTCCTCCCTCCACCCCTCCC
TTCCCGGAAAAGGTCACCATCAACGACGAGCGGCTGTTCGGCGTGCGAGC
CTCCTCCCGCGAGTGCCCGCGTCAACTCGCCAAGAGACTGCGGTTGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig68318:86..1884+

>mRNA_H-elongata_contig68318.14458.1 ID=mRNA_H-elongata_contig68318.14458.1|Name=mRNA_H-elongata_contig68318.14458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig68318:86..1884+ (Himanthalia elongata Himel1 dioecious)
GTGGCCATCACGTGCTTTTTCCGAAACAGCGCGACGTTCGCCTATCCGGC
TCGCGTGGCCGCCTTCACCGCAGTGGTAATCTTTACGGGGTCCAATAGCG
TGCTCGGCGCCGACGGGGAGGTCGTGTCGCTGGCCCGTATCGTCAACACC
GTCATGGGCAGTCTCATCTACCTCTTCGTCGACATACTCCTAGGTGGCCA
TCACGTGCTTTTTCCGAAACAGCGCGACGTTCGCCTATCCGGCTCGCGTG
GCCGCCTTCACCGCAGTGGTAATCTTTACGGGGTCCAATAGCGTGCTCGG
CGCCGACGGGGAGGTCGTGTCGCTGGCCCGTATCGTCAACACCGTCATGG
GCAGTCTCATCTACCTCTTCGTCGACATACTCCTAGTGCCCACCCGTGCA
AAAGTTCTGCTTTATGAGCAGACGTACCTGTCCCTCGATGCAGCTCTCAA
AGAGTGCCCACCCGTGCAAAAGTTCTGCTTTATGAGCAGACGTACCTGTC
CCTCGATGCAGCTCTCAAAGAGGTCACCATCAACGACGAGCGGCTGTTCG
GCGTGCGAGCCTCCTCCCGCGAGTGCCCGCGTCAACTCGCCAAGAGACTG
CGGTTGTCGGTCACCATCAACGACGAGCGGCTGTTCGGCGTGCGAGCCTC
CTCCCGCGAGTGCCCGCGTCAACTCGCCAAGAGACTGCGGTTGTCG
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