mRNA_H-elongata_contig68306.14457.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68306.14457.1
Unique NamemRNA_H-elongata_contig68306.14457.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68306.14457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68306contigH-elongata_contig68306:2268..2872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.445949-CDS-H-elongata_contig68306:2267..26031622931076.445949-CDS-H-elongata_contig68306:2267..2603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68306 2268..2603 +
1691679688.1599667-CDS-H-elongata_contig68306:2267..26031691679688.1599667-CDS-H-elongata_contig68306:2267..2603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68306 2268..2603 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.4626737-UTR-H-elongata_contig68306:2603..28721622931076.4626737-UTR-H-elongata_contig68306:2603..2872Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68306 2604..2872 +
1691679688.1851523-UTR-H-elongata_contig68306:2603..28721691679688.1851523-UTR-H-elongata_contig68306:2603..2872Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68306 2604..2872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68306.14457.1prot_H-elongata_contig68306.14457.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68306 2268..2603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68306.14457.1

>prot_H-elongata_contig68306.14457.1 ID=prot_H-elongata_contig68306.14457.1|Name=mRNA_H-elongata_contig68306.14457.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
RGESASPGCAEEHLGSHLCLVELVPFLQSCFCGRGRPYVRQDCLPLSARP
GKGHVLYMAELIFCFLSPPPETVCVFVNPLTRAISVKIMRDDALPIRTKS
RCLILLGCLEI*
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mRNA from alignment at H-elongata_contig68306:2268..2872+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68306.14457.1 ID=mRNA_H-elongata_contig68306.14457.1|Name=mRNA_H-elongata_contig68306.14457.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=605bp|location=Sequence derived from alignment at H-elongata_contig68306:2268..2872+ (Himanthalia elongata Himel1 dioecious)
CGTGGGGAATCCGCAAGTCCTGGATGTGCCGAGGAGCATCTGGGTTCTCA
TCTCTGTCTGGTGGAGCTTGTGCCCTTTCTCCAGAGCTGCTTCTGCGGCA
GGGGTCGACCTTACGTTCGACAGGACTGTTTGCCTCTGAGCGCCAGACCT
GGGAAAGGACATGTGCTATACATGGCGGAGCTTATTTTTTGTTTTTTATC
CCCACCTCCAGAAACCGTTTGTGTCTTTGTCAACCCACTCACCAGAGCCA
TTTCGGTGAAGATAATGCGTGATGACGCTTTACCTATTCGCACAAAAAGC
CGATGTCTCATTTTGCTGGGATGTTTAGAAATTTAATCTTCACACGAGAA
GCGTCCATTATTTGTTTTCTTGCTCTTCTTTGCTTCCTGATCCCCCCCAG
ACGGCCAAATCATCATTGCCCGGGTGTCGGTAAAATTCCGCGGAATGACG
CATCCTGAGGTTTGAAAAGGAGTGCCACTCTCACTGACCAACGTCTTTAG
TCCCTCAACGAAAACCTCTACCTTTTCATTGGCAAACCCCTTGCCGGCAC
CGAATGAACCACCGTCCACAGGTTGTGGATGACATATTGGGAGAGTTCCC
CGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig68306:2268..2872+

>mRNA_H-elongata_contig68306.14457.1 ID=mRNA_H-elongata_contig68306.14457.1|Name=mRNA_H-elongata_contig68306.14457.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig68306:2268..2872+ (Himanthalia elongata Himel1 dioecious)
CGTGGGGAATCCGCAAGTCCTGGATGTGCCGAGGAGCATCTGGGTTCTCA
TCTCTGTCTGGTGGAGCTTGTGCCCTTTCTCCAGAGCTGCTTCTGCGGCA
GGGGTCGACCTTACGTTCGACAGGACTGTTTGCCTCTGAGCGCCAGACCT
GGGAAAGGACATGTGCTATACATGGCGGAGCTTATTTTTTGTTTTTTATC
CCCACCTCCAGAAACCGTTTGTGTCTTTGTCAACCCACTCACCAGAGCCA
TTTCGGTGAAGATAATGCGTGATGACGCTTTACCTATTCGCACAAAAAGC
CGATGTCTCATTTTGCTGGGATGTTTAGAAATTTAACGTGGGGAATCCGC
AAGTCCTGGATGTGCCGAGGAGCATCTGGGTTCTCATCTCTGTCTGGTGG
AGCTTGTGCCCTTTCTCCAGAGCTGCTTCTGCGGCAGGGGTCGACCTTAC
GTTCGACAGGACTGTTTGCCTCTGAGCGCCAGACCTGGGAAAGGACATGT
GCTATACATGGCGGAGCTTATTTTTTGTTTTTTATCCCCACCTCCAGAAA
CCGTTTGTGTCTTTGTCAACCCACTCACCAGAGCCATTTCGGTGAAGATA
ATGCGTGATGACGCTTTACCTATTCGCACAAAAAGCCGATGTCTCATTTT
GCTGGGATGTTTAGAAATTTAA
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