|
|
Homology
BLAST of mRNA_H-elongata_contig68276.14454.1 vs. uniprot
Match: D7FPJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ7_ECTSI) HSP 1 Score: 281 bits (719), Expect = 3.030e-84 Identity = 223/490 (45.51%), Postives = 274/490 (55.92%), Query Frame = 1
Query: 13 IVREAARTSQAAFLSSVLPLQDSDVDYDLRTPIASKSEPWNTTT---------------VVRGHTRRQFSSG----SAADEADDPGTASSSVAADQDAAKIWVSLERLQDQSVGLGNAAEHQMCRALELCRDIRVQRWKVGTSASSSSEHERASRLEALESVLRGLEEVLSKRTLIDKAARRDADALGGPATIASMLDGHDVARLAAEEEDAIAA---VEVPAKTPSENCGQGEGTGWLSGAQLRAFAKQIQARSSLEISALESERRKLRIKVEMFQRQVELLQRKGAGSS-APASIE----GGSSAPVGIAARN------GLGF---ANERRFANLQNGRLREERHIKATLEAEVASLRDALEERDGLIDALREAVQSNTPTDQTGGALTSIVTEGSASDISQDEDGTPNEQGKNDTSHYVDQNDTPQDAPESSPRADAV------EQGLAVPGRGVFEPIES---QSRGRYHSRSSRLLSAAGPVSSA 1347
IVR+AARTSQAAFLSSVLP QD D D T + S P+ TT V G R G S A G+ ++D AA W S+ RL+DQ GLGNAA+HQ+ RAL+LCRD+R Q K G S S H RASRL+AL+S L GLEEVLSKR ++DK AR +A+ALGGPA S+L+ D + +++ +AA GWL+G+QL+AF K+++ARSS+EISALESERRKLR KVEMFQRQV+LLQR+GAG S APA+ GG A AA G GF A E+RFA+L + RL EER ++ATLEAE+ASLR +EE+DGL+ ALREA++S T S D S GT E G P AD + + VPGRGVF P S +SRGRYHSRSSR LSA GPV++A
Sbjct: 35 IVRQAARTSQAAFLSSVLPTQDLDFD----TANSDSSNPFTPTTLPGISLPNGRHRSPVVGPGEPGRAAGLGGGGVSGLGAAISAGSGVGPTSSDTQAAARWASMRRLEDQGAGLGNAADHQLARALQLCRDLRGQ--KAGVGGGSLSVHGRASRLDALQSTLHGLEEVLSKRRVVDKTARAEAEALGGPAAAWSLLND-DEGSVGDKDQTQVAASGRXXXXXXXXXXXXXXXXSGGWLTGSQLKAFEKKVEARSSIEISALESERRKLRSKVEMFQRQVQLLQREGAGHSPAPANGSTGKIGGYPAATAAAATGEGDSGVGGGFGAAAGEKRFADLLDARLGEERIVQATLEAELASLRRTIEEKDGLVGALREALRS-------------AATPASGGDASTARAGTLAEHGA-------------AQPPARRRSADGILTPRSADGRAVVPGRGVFSPQSSDSSRSRGRYHSRSSRFLSAQGPVAAA 491
BLAST of mRNA_H-elongata_contig68276.14454.1 vs. uniprot
Match: A0A6H5KLE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE5_9PHAE) HSP 1 Score: 276 bits (705), Expect = 3.050e-80 Identity = 215/488 (44.06%), Postives = 277/488 (56.76%), Query Frame = 1
Query: 1 PALQIVREAARTSQAAFLSSVLPLQDSDVDYDL---------------------RTPIASKSEPWNTTTVVRGHTRRQFSSGSAADEADDPGTASSSVAADQDAAKIWVSLERLQDQSVGLGNAAEHQMCRALELCRDIRVQRWKVGTSASSSSEHERASRLEALESVLRGLEEVLSKRTLIDKAARRDADALGGPATIASMLDGHDVARLAAEEEDAIAAV--EVPAKTPSENCGQGEGTGWLSGAQLRAFAKQIQARSSLEISALESERRKLRIKVEMFQRQVELLQRKGAGSS-APASIEGGSSA--PVGIAAR-----NGLG-----FANERRFANLQNGRLREERHIKATLEAEVASLRDALEERDGLIDALREAVQSNTPTDQTGGALTSIVTEGSASDISQDEDGTPNEQGKNDTSHYVDQNDTPQDAPESSPRADAVEQGLAVPGRGVFEPIESQSR---GRYHSRSSRLLSAAGPVSSA 1347
P +IVR+AARTSQAAFLSSVLP Q+ D D R+P+ EP + + G G+A + G SS D AA W S+ RL+DQ GLGNAA+HQ+ RAL+LCRD+R K G S S HERASRL+AL+S L GLEEVLSKR ++D+ AR +A+ALGGPA++ S+L+G + + ++ ++ E A + G G G GWL+G+QL+AF K ++AR+S+EISALESERRKLR KVEMFQRQV+LLQR GAG S APA+ G P AA NG G A E+RFA+L + RL EER ++ATLEAE+ASLR +EE+DGLI ALREA++S + G A T+ GT H Q+ + + + + + VP RGV P S S GRYHSRSSR LSA GPV++A
Sbjct: 275 PTPEIVRQAARTSQAAFLSSVLPTQNLDFDTANSDSSNPFTRAALPESPPNGRHRSPVVGPGEPGRASGIGGGGVSGL---GAAISSGNGVGLTSS----DTRAAARWASMRRLEDQGAGLGNAADHQLARALQLCRDLRGL--KAGMGGGSQSGHERASRLDALQSTLHGLEEVLSKRRVVDQTARAEAEALGGPASVWSLLNGDEGSGTDKDQTQVSSSGRREGAATGTTTAIGGGSG-GWLTGSQLKAFEKNVEARTSIEISALESERRKLRSKVEMFQRQVQLLQRDGAGHSPAPANGSTGKIGGYPAAAAAATSEVDNGAGGRFGAAAGEKRFADLLDARLGEERIVQATLEAELASLRRTIEEKDGLIGALREALRSAATPARGGDAATARA-------------GTL-------AGHGAAQSSARRRSADGMSTPRSADDHAVVPTRGVLLPRSSDSSRSLGRYHSRSSRFLSAQGPVAAA 732
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_000840.1 |
| Exons | 5 |
| Model size | 1359 |
| Cds size | 1359 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931076.1238043-CDS-H-elongata_contig68276:392..779 | 1622931076.1238043-CDS-H-elongata_contig68276:392..779 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68276 393..779 + |
| 1691679688.0420654-CDS-H-elongata_contig68276:392..779 | 1691679688.0420654-CDS-H-elongata_contig68276:392..779 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68276 393..779 + |
| 1622931076.1386855-CDS-H-elongata_contig68276:1015..1335 | 1622931076.1386855-CDS-H-elongata_contig68276:1015..1335 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68276 1016..1335 + |
| 1691679688.0550332-CDS-H-elongata_contig68276:1015..1335 | 1691679688.0550332-CDS-H-elongata_contig68276:1015..1335 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68276 1016..1335 + |
| 1622931076.152395-CDS-H-elongata_contig68276:1550..1626 | 1622931076.152395-CDS-H-elongata_contig68276:1550..1626 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68276 1551..1626 + |
| 1691679688.063027-CDS-H-elongata_contig68276:1550..1626 | 1691679688.063027-CDS-H-elongata_contig68276:1550..1626 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68276 1551..1626 + |
| 1622931076.170062-CDS-H-elongata_contig68276:1843..2011 | 1622931076.170062-CDS-H-elongata_contig68276:1843..2011 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68276 1844..2011 + |
| 1691679688.0707364-CDS-H-elongata_contig68276:1843..2011 | 1691679688.0707364-CDS-H-elongata_contig68276:1843..2011 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68276 1844..2011 + |
| 1622931076.1930923-CDS-H-elongata_contig68276:2435..2843 | 1622931076.1930923-CDS-H-elongata_contig68276:2435..2843 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68276 2436..2843 + |
| 1691679688.07852-CDS-H-elongata_contig68276:2435..2843 | 1691679688.07852-CDS-H-elongata_contig68276:2435..2843 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68276 2436..2843 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68276.14454.1 >prot_H-elongata_contig68276.14454.1 ID=prot_H-elongata_contig68276.14454.1|Name=mRNA_H-elongata_contig68276.14454.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=453bp
PALQIVREAARTSQAAFLSSVLPLQDSDVDYDLRTPIASKSEPWNTTTVV RGHTRRQFSSGSAADEADDPGTASSSVAADQDAAKIWVSLERLQDQSVGL GNAAEHQMCRALELCRDIRVQRWKVGTSASSSSEHERASRLEALESVLRG LEEVLSKRTLIDKAARRDADALGGPATIASMLDGHDVARLAAEEEDAIAA VEVPAKTPSENCGQGEGTGWLSGAQLRAFAKQIQARSSLEISALESERRK LRIKVEMFQRQVELLQRKGAGSSAPASIEGGSSAPVGIAARNGLGFANER RFANLQNGRLREERHIKATLEAEVASLRDALEERDGLIDALREAVQSNTP TDQTGGALTSIVTEGSASDISQDEDGTPNEQGKNDTSHYVDQNDTPQDAP ESSPRADAVEQGLAVPGRGVFEPIESQSRGRYHSRSSRLLSAAGPVSSAL AGA back to topmRNA from alignment at H-elongata_contig68276:393..2843+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig68276.14454.1 ID=mRNA_H-elongata_contig68276.14454.1|Name=mRNA_H-elongata_contig68276.14454.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2451bp|location=Sequence derived from alignment at H-elongata_contig68276:393..2843+ (Himanthalia elongata Himel1 dioecious) CCTGCCCTGCAGATAGTGCGAGAGGCGGCGCGTACTTCCCAGGCGGCTTT
TCTCTCTTCGGTTCTCCCGTTACAGGATTCCGATGTGGACTATGACCTTA
GAACCCCTATAGCCTCAAAGTCTGAACCCTGGAACACCACGACTGTTGTA
AGGGGGCATACTCGGCGACAATTCAGCAGTGGATCGGCCGCGGACGAAGC
CGACGATCCCGGCACCGCTTCCAGTAGCGTCGCCGCAGACCAAGATGCGG
CAAAAATATGGGTCTCGCTGGAAAGGCTCCAAGATCAAAGCGTTGGACTC
GGTAACGCCGCGGAGCATCAAATGTGTCGTGCGCTCGAGCTCTGTCGCGA
TATCCGAGTCCAACGCTGGAAGGTAGGCACCTCGGCTGTCAATGCCAACA
TGGATGTATTTTGCACTTAAGAATGTTGGTGTGAATCAAATTTATGGCGT
GTACGCGCTGCCATCTTGGAACGCTCGCAAGCTTTTCGACTTTAGTTGTC
TTCCTCGGATGTGGCATTGTATGGTGTATATAATACCTATATTATATAAT
GGTATGGTATATAATTGTTTCGCATCGATCATTCTTTGTTTCCCTGCAGG
CAGGGGTCGGGGCTGCCAGCCAGAGTTCATCTTCCGAACACGAACGTGCG
TCTCGGCTGGAGGCTCTTGAGTCGGTCTTGCGGGGCCTGGAAGAAGTTTT
GTCGAAGCGAACCCTCATTGACAAGGCCGCCAGACGCGACGCGGATGCTC
TTGGTGGCCCGGCAACGATTGCGAGCATGTTGGACGGTCACGACGTGGCT
CGCCTAGCGGCCGAGGAGGAAGACGCGATTGCGGCGGTCGAAGTACCGGC
CAAGACACCCTCAGAGAATTGCGGCCAGGGAGAGGGCACTGGGTGGCTGA
GCGGTGCTCAGCTGAGGGCCTTCGCAAAGCAGATCCAGGCTAGGTACTAG
ATATTGGCACGCCCGTGTGAAGTACACCCATGTACACGGAGATATAGCTG
TAAATGATTGTGTATCGTGTGGTGAGATATTGCGACGGGAAAGCGAGTGG
TCGTGCGCCTGTATAATCATGTCTTATAATAAAAGCACCGTTTGTCATGA
GCGATGGTAGACCTTCTATGCGATCATGTTGCGCTACTCTGCTCCAATAC
TAAACCAGGTCCTCCTTAGAAATATCGGCTCTTGAGTCCGAGAGGCGCAA
GCTAAGAATTAAAGTGGAGATGTTCCAGAGGCAGGTGAGATGTACCGTCT
TCCCTAGGCACGGATGGGCGTGTATCGTGATCCCCGGACGTGGTTTCTAA
TATCTGCTTGGGGTTGAATTAGTTGTTTTACGCAGCAGTACATCCTAATC
ATGTCGTCGGGACCATACGCCACCCTGCCGTTAAAATCTTAGAAAAGTTG
CTTGAATCATTTCAACATGGTGGCCATATTTCCATTTCCGTCCGAGCCCA
GGTGGAGCTTTTGCAGCGCAAAGGAGCCGGGTCCTCTGCTCCAGCGTCCA
TCGAGGGTGGGAGTAGCGCCCCCGTTGGTATTGCTGCGCGCAACGGGTTA
GGGTTCGCCAACGAAAGGCGGTTCGCTAATCTCCAAAACGGTCGCTTGAG
AGAGGAACGTCACATCAAGGTGATTTACTTCTCCGTCTTGGCGGCAGAGC
GATACATCGCCGTTCTGACGACCTCGTCGATGACCGGGATAATCTGGTGC
ACGCAATGCTCTAGTGTTTTTATTTTTTTAATTTCGAACTCATTCCAACC
CTCCCAACACCCACACCTTCTTAGCGGCGTGAGAGGTGCAGTCCAGGGGA
CCAACTATCGTTAGATTCGAATGTGTACACGTGAACAAGGCGCTGTACGA
CTGTCTGGAAAAATTTTGAAGTGCCGCAGTGTCGGCCGCGTTCGCCTCAA
ACATAAACATTCGTTGTGCGTGTCAGATTAATAATGTCTCCGTTTTAATT
AATAATCTCTCCGTGTTATGTCCCAAGTAACATCAATCCCCGCGTAGAAA
TGATACGACGTTGAGAGCTAACAATGTGTCGTGAACTCCGCAGGCGACCC
TCGAAGCGGAAGTGGCTTCGCTTCGCGATGCACTAGAGGAAAGAGACGGA
CTCATCGATGCGCTTCGCGAGGCCGTCCAGTCGAACACACCGACGGATCA
GACCGGCGGTGCCCTCACCTCGATCGTTACTGAGGGTTCTGCTTCCGATA
TTTCCCAAGACGAAGATGGCACCCCCAATGAACAAGGAAAAAACGATACT
TCGCACTACGTGGACCAAAACGACACCCCCCAAGACGCCCCAGAGAGCTC
CCCTCGGGCCGACGCCGTCGAACAGGGCCTGGCCGTGCCGGGACGTGGAG
TTTTTGAACCTATCGAGAGCCAGAGTCGCGGACGCTACCACTCGAGATCG
TCCCGACTGCTCAGTGCCGCTGGACCGGTGTCGAGCGCGTTAGCAGGAGC
G back to topCoding sequence (CDS) from alignment at H-elongata_contig68276:393..2843+ >mRNA_H-elongata_contig68276.14454.1 ID=mRNA_H-elongata_contig68276.14454.1|Name=mRNA_H-elongata_contig68276.14454.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2718bp|location=Sequence derived from alignment at H-elongata_contig68276:393..2843+ (Himanthalia elongata Himel1 dioecious) CCTGCCCTGCAGATAGTGCGAGAGGCGGCGCGTACTTCCCAGGCGGCTTT TCTCTCTTCGGTTCTCCCGTTACAGGATTCCGATGTGGACTATGACCTTA GAACCCCTATAGCCTCAAAGTCTGAACCCTGGAACACCACGACTGTTGTA AGGGGGCATACTCGGCGACAATTCAGCAGTGGATCGGCCGCGGACGAAGC CGACGATCCCGGCACCGCTTCCAGTAGCGTCGCCGCAGACCAAGATGCGG CAAAAATATGGGTCTCGCTGGAAAGGCTCCAAGATCAAAGCGTTGGACTC GGTAACGCCGCGGAGCATCAAATGTGTCGTGCGCTCGAGCTCTGTCGCGA TATCCGAGTCCAACGCTGGAAGGTAGGCACCTCGGCTCCTGCCCTGCAGA TAGTGCGAGAGGCGGCGCGTACTTCCCAGGCGGCTTTTCTCTCTTCGGTT CTCCCGTTACAGGATTCCGATGTGGACTATGACCTTAGAACCCCTATAGC CTCAAAGTCTGAACCCTGGAACACCACGACTGTTGTAAGGGGGCATACTC GGCGACAATTCAGCAGTGGATCGGCCGCGGACGAAGCCGACGATCCCGGC ACCGCTTCCAGTAGCGTCGCCGCAGACCAAGATGCGGCAAAAATATGGGT CTCGCTGGAAAGGCTCCAAGATCAAAGCGTTGGACTCGGTAACGCCGCGG AGCATCAAATGTGTCGTGCGCTCGAGCTCTGTCGCGATATCCGAGTCCAA CGCTGGAAGGTAGGCACCTCGGCTAGTTCATCTTCCGAACACGAACGTGC GTCTCGGCTGGAGGCTCTTGAGTCGGTCTTGCGGGGCCTGGAAGAAGTTT TGTCGAAGCGAACCCTCATTGACAAGGCCGCCAGACGCGACGCGGATGCT CTTGGTGGCCCGGCAACGATTGCGAGCATGTTGGACGGTCACGACGTGGC TCGCCTAGCGGCCGAGGAGGAAGACGCGATTGCGGCGGTCGAAGTACCGG CCAAGACACCCTCAGAGAATTGCGGCCAGGGAGAGGGCACTGGGTGGCTG AGCGGTGCTCAGCTGAGGGCCTTCGCAAAGCAGATCCAGGCTAGAGTTCA TCTTCCGAACACGAACGTGCGTCTCGGCTGGAGGCTCTTGAGTCGGTCTT GCGGGGCCTGGAAGAAGTTTTGTCGAAGCGAACCCTCATTGACAAGGCCG CCAGACGCGACGCGGATGCTCTTGGTGGCCCGGCAACGATTGCGAGCATG TTGGACGGTCACGACGTGGCTCGCCTAGCGGCCGAGGAGGAAGACGCGAT TGCGGCGGTCGAAGTACCGGCCAAGACACCCTCAGAGAATTGCGGCCAGG GAGAGGGCACTGGGTGGCTGAGCGGTGCTCAGCTGAGGGCCTTCGCAAAG CAGATCCAGGCTAGGTCCTCCTTAGAAATATCGGCTCTTGAGTCCGAGAG GCGCAAGCTAAGAATTAAAGTGGAGATGTTCCAGAGGCAGGTCCTCCTTA GAAATATCGGCTCTTGAGTCCGAGAGGCGCAAGCTAAGAATTAAAGTGGA GATGTTCCAGAGGCAGGTGGAGCTTTTGCAGCGCAAAGGAGCCGGGTCCT CTGCTCCAGCGTCCATCGAGGGTGGGAGTAGCGCCCCCGTTGGTATTGCT GCGCGCAACGGGTTAGGGTTCGCCAACGAAAGGCGGTTCGCTAATCTCCA AAACGGTCGCTTGAGAGAGGAACGTCACATCAAGGTGGAGCTTTTGCAGC GCAAAGGAGCCGGGTCCTCTGCTCCAGCGTCCATCGAGGGTGGGAGTAGC GCCCCCGTTGGTATTGCTGCGCGCAACGGGTTAGGGTTCGCCAACGAAAG GCGGTTCGCTAATCTCCAAAACGGTCGCTTGAGAGAGGAACGTCACATCA AGGCGACCCTCGAAGCGGAAGTGGCTTCGCTTCGCGATGCACTAGAGGAA AGAGACGGACTCATCGATGCGCTTCGCGAGGCCGTCCAGTCGAACACACC GACGGATCAGACCGGCGGTGCCCTCACCTCGATCGTTACTGAGGGTTCTG CTTCCGATATTTCCCAAGACGAAGATGGCACCCCCAATGAACAAGGAAAA AACGATACTTCGCACTACGTGGACCAAAACGACACCCCCCAAGACGCCCC AGAGAGCTCCCCTCGGGCCGACGCCGTCGAACAGGGCCTGGCCGTGCCGG GACGTGGAGTTTTTGAACCTATCGAGAGCCAGAGTCGCGGACGCTACCAC TCGAGATCGTCCCGACTGCTCAGTGCCGCTGGACCGGTGTCGAGCGCGTT AGCAGGAGCGGCGACCCTCGAAGCGGAAGTGGCTTCGCTTCGCGATGCAC TAGAGGAAAGAGACGGACTCATCGATGCGCTTCGCGAGGCCGTCCAGTCG AACACACCGACGGATCAGACCGGCGGTGCCCTCACCTCGATCGTTACTGA GGGTTCTGCTTCCGATATTTCCCAAGACGAAGATGGCACCCCCAATGAAC AAGGAAAAAACGATACTTCGCACTACGTGGACCAAAACGACACCCCCCAA GACGCCCCAGAGAGCTCCCCTCGGGCCGACGCCGTCGAACAGGGCCTGGC CGTGCCGGGACGTGGAGTTTTTGAACCTATCGAGAGCCAGAGTCGCGGAC GCTACCACTCGAGATCGTCCCGACTGCTCAGTGCCGCTGGACCGGTGTCG AGCGCGTTAGCAGGAGCG back to top
|