mRNA_H-elongata_contig68273.14452.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68273.14452.1
Unique NamemRNA_H-elongata_contig68273.14452.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Match: A0A6H5JKV5_9PHAE (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV5_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 4.080e-59
Identity = 99/118 (83.90%), Postives = 101/118 (85.59%), Query Frame = 1 
Query:    4 GCRLKITVCDPVKQDQGINAYITYKVNTHTDRQDFHRQDFSYGTCVVIRRFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLNRVAAHRELSGSQYFKTFLQ 357
            G RL ITVCDPVKQDQGINAYITYKV+T TDR DF      YG   VIRRFKDFVWLS RLEEEFPG+VMPALPVKMVVGKFDQ FVEKRRKELEIFLNRVAAH ELS SQYFKTFLQ
Sbjct:   27 GSRLNITVCDPVKQDQGINAYITYKVHTSTDRPDFQ-----YGQFTVIRRFKDFVWLSHRLEEEFPGMVMPALPVKMVVGKFDQTFVEKRRKELEIFLNRVAAHGELSASQYFKTFLQ 139
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BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Match: A0A835Z9B1_9STRA (Sorting nexin 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B1_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.200e-36
Identity = 70/114 (61.40%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:   19 ITVCDPVKQDQG-INAYITYKVNTHTDRQDFHRQDFSYGTCVVIRRFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLNRVAAHRELSGSQYFKTFLQ 357
            I+V DPVKQDQG +N YITYK+NT TDR DF      YG   VIRRFKDFVWLS+RL EEFPG++ P LP K  + +FD   +E+RR ELE +L RVAAH ELSG+  F  FLQ
Sbjct:    1 ISVVDPVKQDQGGLNPYITYKINTTTDRPDFQ-----YGQFSVIRRFKDFVWLSERLGEEFPGVINPPLPDKETLKRFDPEHIERRRVELEHYLGRVAAHGELSGAPVFMAFLQ 109
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BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Match: A0A8J2WT43_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WT43_9STRA)

HSP 1 Score: 130 bits (327), Expect = 9.340e-34
Identity = 63/115 (54.78%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:   13 LKITVCDPVKQDQGINAYITYKVNTHTDRQDFHRQDFSYGTCVVIRRFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLNRVAAHRELSGSQYFKTFLQ 357
            L ITV DP K+ +G+N+Y++YKVNT T+R++F     SYG   VIRR+ DF WLS RL  + PG ++P LP K VVG+F   FVE RR++LE FL + A H ELS S YF+TFLQ
Sbjct:   19 LTITVSDPKKESEGMNSYVSYKVNTATNREEF-----SYGQFGVIRRYSDFAWLSDRLARDVPGAIVPPLPDKAVVGRFGADFVESRRRQLERFLQQTAEHEELSKSHYFQTFLQ 128
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BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Match: A0A7S3JUY8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUY8_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.290e-33
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 1 
Query:    4 GCRLKITVCDPVKQDQGINAYITYKVNTHTDRQDFHRQDFSYGTCVVIRRFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLNRVAAHRELSGSQYFKTFLQ 357
            G  L ITV DP K+ +GIN+YI+YKVNT T+  +F+     YG   VIRR+ DF+WLS++L  + PG ++P LP K VVG+F   F+E RR+ LE FLNR+ AH ELS S+YF+ FLQ
Sbjct:   16 GRSLIITVSDPKKESEGINSYISYKVNTQTNLPEFN-----YGQFSVIRRYSDFIWLSEQLARDVPGAIVPPLPEKAVVGRFSAEFIESRRRLLEKFLNRLGAHDELSASKYFRLFLQ 128
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BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Match: F0YAT7_AURAN (PX domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAT7_AURAN)

HSP 1 Score: 124 bits (311), Expect = 1.100e-31
Identity = 62/115 (53.91%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:   13 LKITVCDPVKQDQGINAYITYKVNTHTDRQDFHRQDFSYGTCVVIRRFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLNRVAAHRELSGSQYFKTFLQ 357
            L I+V DP K+ +GIN+YI+YKVNT T+  +F      YG   VIRR+ DFVWL   L+++ PG ++P LP K VVG+F   FVE RR+ LE F  R+AAH ELS S+YFK FLQ
Sbjct:    1 LTISVSDPKKESEGINSYISYKVNTQTNLPEFQ-----YGQFSVIRRYSDFVWLHDMLQKDVPGSIVPPLPEKAVVGRFSADFVESRRRLLEKFCVRLAAHEELSDSKYFKLFLQ 110
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BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Match: A0A1V9Z5R4_9STRA (Sorting nexin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5R4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.650e-29
Identity = 55/115 (47.83%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:   13 LKITVCDPVKQDQGINAYITYKVNTHTDRQDFHRQDFSYGTCVVIRRFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLNRVAAHRELSGSQYFKTFLQ 357
            ++I V +PVKQ +G+ AYI+YK+ T+T+R+ F    FS     VIRRF DFVWL   L   +PG+++P LP K++VG+F   FVE RR+ L++FL+R A H E+  S+YF  FL+
Sbjct:   30 IQIDVGEPVKQGEGMQAYISYKITTNTERRQFKMPQFS-----VIRRFSDFVWLHGSLCSLYPGVIVPPLPEKLLVGRFSPEFVESRRRALQVFLSRCAVHPEIQNSEYFTVFLE 139
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BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Match: W4FQ38_9STRA (PX domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQ38_9STRA)

HSP 1 Score: 116 bits (291), Expect = 6.280e-29
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:   13 LKITVCDPVKQDQGINAYITYKVNTHTDRQDFHRQDFSYGTCVVIRRFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLNRVAAHRELSGSQYFKTFLQ 357
            + I V +PVKQ +G++AYI+YK+ T TDR+ F +  FS     VIRRF DFVWL   L  ++PG+V+P LP K++VG+F   FVE RR+ L +FL R  AH E+  S +  TFL+
Sbjct:   64 MHIDVGEPVKQGEGMHAYISYKITTSTDRRQFQKSQFS-----VIRRFSDFVWLHASLCAQYPGVVVPPLPEKLLVGRFSPEFVESRRRALHLFLCRCGAHPEIQHSDHLTTFLE 173
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BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Match: K3W5H6_GLOUD (PX domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5H6_GLOUD)

HSP 1 Score: 118 bits (296), Expect = 9.470e-29
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:    1 PGCRLKITVCDPVKQDQGINAYITYKVNTHTDRQDFHRQDFSYGTCVVIRRFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLNRVAAHRELSGSQYFKTFLQ 357
            P   ++ITV +PVKQ  G+NAYI+YK++T T+R  F +  FS     VIRR+ DF+WL   L   +PG+V+P LP K++VG+F   F+E RR+ L++FL+R  +H EL  S +  TFL+
Sbjct:  114 PESSIQITVSEPVKQGDGMNAYISYKISTDTNRPQFTKSSFS-----VIRRYSDFIWLHGNLYAMYPGVVVPPLPEKLLVGRFSPEFIESRRRALQLFLHRCCSHPELQHSAHLTTFLE 227
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BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Match: A0A0P1B308_PLAHL (Sorting nexin 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B308_PLAHL)

HSP 1 Score: 115 bits (289), Expect = 1.030e-28
Identity = 51/115 (44.35%), Postives = 78/115 (67.83%), Query Frame = 1 
Query:   13 LKITVCDPVKQDQGINAYITYKVNTHTDRQDFHRQDFSYGTCVVIRRFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLNRVAAHRELSGSQYFKTFLQ 357
            +++ V +PVKQ +GIN+YI+YK++T T R  F ++ FS     V+RR+ DFVW+   +   +PG+V+P LP K++VG+F   F+E RR+ L++FL R   H EL  SQ+  TFL+
Sbjct:   71 IQVVVSEPVKQGEGINSYISYKISTTTTRPQFSKRSFS-----VVRRYSDFVWIHTHINAMYPGVVVPPLPEKLLVGRFSPEFIESRRRALQVFLQRCCLHPELQHSQHLITFLE 180
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BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Match: W2PFS6_PHYPN (PX domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2PFS6_PHYPN)

HSP 1 Score: 118 bits (295), Expect = 1.130e-28
Identity = 53/119 (44.54%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:    1 PGCRLKITVCDPVKQDQGINAYITYKVNTHTDRQDFHRQDFSYGTCVVIRRFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLNRVAAHRELSGSQYFKTFLQ 357
            P   +++TV +PVKQ +G+NAYI+YK++T T R  F +  FS     V+RR+ DFVW+   L   +PG+V+P LP K++VG+F   F+E RR+ L++FL+R   H EL  S++  TFL+
Sbjct:   72 PLSNIQVTVSEPVKQGEGMNAYISYKISTTTTRPQFSKSSFS-----VVRRYSDFVWIHGHLSAMYPGVVVPPLPEKLLVGRFSPEFIESRRRALQLFLHRCCLHPELQHSEHLTTFLE 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68273.14452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKV5_9PHAE4.080e-5983.90PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835Z9B1_9STRA2.200e-3661.40Sorting nexin 1 n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A8J2WT43_9STRA9.340e-3454.78Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JUY8_9STRA1.290e-3353.39Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YAT7_AURAN1.100e-3153.91PX domain-containing protein (Fragment) n=1 Tax=Au... [more]
A0A1V9Z5R4_9STRA3.650e-2947.83Sorting nexin n=1 Tax=Thraustotheca clavata TaxID=... [more]
W4FQ38_9STRA6.280e-2948.70PX domain-containing protein n=1 Tax=Aphanomyces a... [more]
K3W5H6_GLOUD9.470e-2946.22PX domain-containing protein n=1 Tax=Globisporangi... [more]
A0A0P1B308_PLAHL1.030e-2844.35Sorting nexin 1 n=1 Tax=Plasmopara halstedii TaxID... [more]
W2PFS6_PHYPN1.130e-2844.54PX domain-containing protein n=13 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68273contigH-elongata_contig68273:10..1078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue1.9e-48
Seed eggNOG ortholog2880.D8LM83
Preferred nameSNX1
KEGG koko:K17917,ko:K17921
KEGG Pathwayko04144,map04144
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006996,GO:0007034,GO:0007041,GO:0007275,GO:0008104,GO:0008150,GO:0008289,GO:0008333,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009958,GO:0009987,GO:0010008,GO:0010252,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019898,GO:0022622,GO:0030904,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098796,GO:0098805,GO:0099402
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsCOG5391@1,KOG2273@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size357
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68273.14452.1prot_H-elongata_contig68273.14452.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68273 10..1078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.9594896-CDS-H-elongata_contig68273:9..991622931075.9594896-CDS-H-elongata_contig68273:9..99Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68273 10..99 -
1691679687.9728904-CDS-H-elongata_contig68273:9..991691679687.9728904-CDS-H-elongata_contig68273:9..99Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68273 10..99 -
1622931075.971463-CDS-H-elongata_contig68273:670..8591622931075.971463-CDS-H-elongata_contig68273:670..859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68273 671..859 -
1691679687.9854531-CDS-H-elongata_contig68273:670..8591691679687.9854531-CDS-H-elongata_contig68273:670..859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68273 671..859 -
1622931075.9832437-CDS-H-elongata_contig68273:1000..10781622931075.9832437-CDS-H-elongata_contig68273:1000..1078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68273 1001..1078 -
1691679687.9967895-CDS-H-elongata_contig68273:1000..10781691679687.9967895-CDS-H-elongata_contig68273:1000..1078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68273 1001..1078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68273.14452.1

>prot_H-elongata_contig68273.14452.1 ID=prot_H-elongata_contig68273.14452.1|Name=mRNA_H-elongata_contig68273.14452.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
PGCRLKITVCDPVKQDQGINAYITYKVNTHTDRQDFHRQDFSYGTCVVIR
RFKDFVWLSQRLEEEFPGIVMPALPVKMVVGKFDQMFVEKRRKELEIFLN
RVAAHRELSGSQYFKTFLQ
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mRNA from alignment at H-elongata_contig68273:10..1078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68273.14452.1 ID=mRNA_H-elongata_contig68273.14452.1|Name=mRNA_H-elongata_contig68273.14452.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1069bp|location=Sequence derived from alignment at H-elongata_contig68273:10..1078- (Himanthalia elongata Himel1 dioecious)
CCCGGATGCCGACTGAAAATCACCGTGTGCGACCCGGTCAAGCAGGACCA
GGGGATAAACGCCTACATCACCTACAAGGTATTTTGGTGGTTCTTTGGAA
AGTTTTGGAAATCGCTGACGTTCTTTCCTAGGCCATGTGTTGCCCGGGCG
GGCGTTGTGGACACCGCCAACCTCCTCCGCTTGGTGTACCGACCGCAACT
CTCTTCTGTCCGACCGCAGGTCAATACGCACACGGACCGGCAGGATTTCC
ACCGCCAAGACTTTAGCTATGGAACGTGTGTCGTGATCCGGCGGTTTAAA
GACTTTGTGTGGCTGAGCCAGCGCCTTGAGGAGGAGTTCCCCGGGATTGT
AATGCCTGCTCTTCCGGTGAAGATGGTCGTGGGGAAGTTTGATCAGATGT
TTGTTGAGGTGAGCATTGGCGAGGAGAGCATGTATCGCTCCGATAATCTC
TCGATCGGCAGAGGCGGCATGAATAGTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTCGACTATTATATTTTTTTTTTTTTTTTTTTTTGTGCTGTTTTTTT
CTTTTTTTTTTTTTCATTTTTCTTTGTTTTTCTTNNNNNNNNNNGTGGCT
GGGCGGAGGCGGCATGATTAGTTTTTTTTTTTTTTTTTTTTGGTAAGTCC
CGACTATTAATATTAATATGATTATTTAGTTAGCGGCGGCTGTGGCGTGG
ATTTTGTGGCCACTTCCTGTGTTAGCGTTTCACTATTCGTTTATTATTAT
TTTTGTTGATTAATTAATTTGTTTGCCTTGGCGGAACCACGGACAGATTT
TTTGTGATTAATTTGCTTCAGATATATAACATAAAGCTTCTGCTGTATTA
TATGGGGAGGAAATCCGTTGGTGAGTTTTCTTGGCCAACTCGTTTCTCTA
AACGCCTTGGAGTTTTTTGGGTTTTTTTCCCGATTCCGTCTCTCGGCGAA
CAATTACCGCTGCCGCCTTTCCTCAACAGAAGCGTCGCAAGGAGCTGGAG
ATTTTCCTCAACAGAGTGGCGGCGCACAGGGAGCTTTCGGGCTCGCAGTA
CTTCAAGACTTTCCTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig68273:10..1078-

>mRNA_H-elongata_contig68273.14452.1 ID=mRNA_H-elongata_contig68273.14452.1|Name=mRNA_H-elongata_contig68273.14452.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig68273:10..1078- (Himanthalia elongata Himel1 dioecious)
CCCGGATGCCGACTGAAAATCACCGTGTGCGACCCGGTCAAGCAGGACCA
GGGGATAAACGCCTACATCACCTACAAGCCCGGATGCCGACTGAAAATCA
CCGTGTGCGACCCGGTCAAGCAGGACCAGGGGATAAACGCCTACATCACC
TACAAGGTCAATACGCACACGGACCGGCAGGATTTCCACCGCCAAGACTT
TAGCTATGGAACGTGTGTCGTGATCCGGCGGTTTAAAGACTTTGTGTGGC
TGAGCCAGCGCCTTGAGGAGGAGTTCCCCGGGATTGTAATGCCTGCTCTT
CCGGTGAAGATGGTCGTGGGGAAGTTTGATCAGATGTTTGTTGAGGTCAA
TACGCACACGGACCGGCAGGATTTCCACCGCCAAGACTTTAGCTATGGAA
CGTGTGTCGTGATCCGGCGGTTTAAAGACTTTGTGTGGCTGAGCCAGCGC
CTTGAGGAGGAGTTCCCCGGGATTGTAATGCCTGCTCTTCCGGTGAAGAT
GGTCGTGGGGAAGTTTGATCAGATGTTTGTTGAGAAGCGTCGCAAGGAGC
TGGAGATTTTCCTCAACAGAGTGGCGGCGCACAGGGAGCTTTCGGGCTCG
CAGTACTTCAAGACTTTCCTGCAGAAGCGTCGCAAGGAGCTGGAGATTTT
CCTCAACAGAGTGGCGGCGCACAGGGAGCTTTCGGGCTCGCAGTACTTCA
AGACTTTCCTGCAG
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