mRNA_H-elongata_contig68260.14450.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68260.14450.1
Unique NamemRNA_H-elongata_contig68260.14450.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68260.14450.1 vs. uniprot
Match: D8LSX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX4_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 2.360e-58
Identity = 97/135 (71.85%), Postives = 115/135 (85.19%), Query Frame = 2 
Query:    2 EDRARRTWRAYEFIQLPARNRTLDSEVLGMNVGLAPNDTRLDVIVDYGRKEEAPEVGSRLLDMVTDVSKEASEVFGYEDDASTGGEKLGPWKKAGSVNSWRKWLHM-ESDEPLPESAVTVFRIVQANWASPEKIA 403
            EDR  R W+AYEFI LP+RNRTLDSEVLGMNVG + NDTRL+V VD+ +++EA EVG RLLDM+ DVS+E +EVFGY DDA TGG++LGPWKK+GSVNSWRKWL + + ++PLPESAVTVFR VQANWA P KIA
Sbjct:   39 EDRPPRRWQAYEFIPLPSRNRTLDSEVLGMNVGRSVNDTRLEVTVDFEKEDEALEVGMRLLDMMADVSREPNEVFGYADDAVTGGQQLGPWKKSGSVNSWRKWLELGDGEDPLPESAVTVFRTVQANWADPNKIA 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68260.14450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSX4_ECTSI2.360e-5871.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68260contigH-elongata_contig68260:395..1872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size405
Cds size288
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68260.14450.1prot_H-elongata_contig68260.14450.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68260 510..1872 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.6951895-UTR-H-elongata_contig68260:394..5091622931075.6951895-UTR-H-elongata_contig68260:394..509Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68260 395..509 -
1691679687.829383-UTR-H-elongata_contig68260:394..5091691679687.829383-UTR-H-elongata_contig68260:394..509Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68260 395..509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.7308922-CDS-H-elongata_contig68260:509..5301622931075.7308922-CDS-H-elongata_contig68260:509..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68260 510..530 -
1691679687.838194-CDS-H-elongata_contig68260:509..5301691679687.838194-CDS-H-elongata_contig68260:509..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68260 510..530 -
1622931075.7495584-CDS-H-elongata_contig68260:973..10771622931075.7495584-CDS-H-elongata_contig68260:973..1077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68260 974..1077 -
1691679687.847569-CDS-H-elongata_contig68260:973..10771691679687.847569-CDS-H-elongata_contig68260:973..1077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68260 974..1077 -
1622931075.769109-CDS-H-elongata_contig68260:1709..18721622931075.769109-CDS-H-elongata_contig68260:1709..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68260 1710..1872 -
1691679687.8680573-CDS-H-elongata_contig68260:1709..18721691679687.8680573-CDS-H-elongata_contig68260:1709..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68260 1710..1872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68260.14450.1

>prot_H-elongata_contig68260.14450.1 ID=prot_H-elongata_contig68260.14450.1|Name=mRNA_H-elongata_contig68260.14450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
RGPRAADVASVRVYPAAGAEPYAGLGGVGHERRLGAQRHPSRCDRRLRQE
GRSPGSWVAAVRHGDGRLERGERGLRLRGRRFHGRGKAWPLEEGG*
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mRNA from alignment at H-elongata_contig68260:395..1872-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68260.14450.1 ID=mRNA_H-elongata_contig68260.14450.1|Name=mRNA_H-elongata_contig68260.14450.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1478bp|location=Sequence derived from alignment at H-elongata_contig68260:395..1872- (Himanthalia elongata Himel1 dioecious)
AGAGGACCGCGCGCGGCGGACGTGGCGAGCGTACGAGTTTATCCAGCTGC
CGGCGCGGAACCGTACGCTGGACTCGGAGGTGTTGGGCATGAACGTCGGC
TTGGCGCCCAACGACACCCGTCTCGATGTGATCGTCGACTACGGCAGGAA
GGAAGAAGCCCCGGTGGGTGCTGGGTGCTGTGGTGCACTGGCTAGTTCTG
CTCTTAATGTCTGTAAAATATGGTGCGATAGGGCATTACGATAGGGCACT
ACGGTACGACACTAGGCGGTAGAAGCCAATGGGTGACCGAACATACGCGG
TAGAAGACATGCGCGCAAACATACCGCAAGCACACCGCAGCTACAGCCTG
CCGGGATGCTGGGATGTTGGGATCGAGGTGGTGAACGAATATAAAGCATT
TTGTAGCCCCGATCCCCTATTATCCCGGCGGCGGTTTTTGTATACGCAAA
AGAGAGGGTGGAGAGAAGCAGGAAAGGGAGGGCGGGCGGGTGGGGGGGAC
TGTTTGGTTTGATGCCCCATTCCTCTGGCGACAGGAGACATGACAACGTT
CATAACGCTCTGCTAGGGGATGTCCCATTCCGAGCCTCCAGCCGCAACTA
GTGATTACCGCCATACCTTACATGTGGATATAACAGTGGTTCCATGTCAA
TCCGGTTCCGATCCTCTTCTATCGTTGACGTCGATGATCGTTGGCCGCCG
TTGGTCATCGTTGCTGATGTTGGTACTCGTGCTAGTGCTCGTTGCTGCGT
TGATTTCCATTGTATTTATACACGGGGAATAATTTCGCGCCGCAGGAAGT
TGGGTCGCGGCTGTTAGACATGGTGACGGACGTCTCGAAAGAGGCGAGCG
AGGTCTTCGGCTACGAGGACGACGCTTCCACGGGAGGGGAAAAGCTTGGG
TGGGGGTTTCCACGCATATATATATATATATATATGATATACAGTGCGCA
TATTTCATTTTAAGTTTAGTTTTAGTTTAGTCTTCTTGATTTTTGTATAA
TATGGTATATATATATATTTACCATATATTTTAGCTCGTGTTATTTATAA
AAAAATACTCAAAATCATATATAGATACTATATATATATATCATATTAGT
TTTATTTTATTTTAGGTACTATAACATTCACCTTTGCCCTCACCCTCGCC
CTCGCCGGAGAGTTTCCCTTGCTTTGAACCATTAGATGACGATTTTCATT
GTACTGGTATGTTGTTTCTTCCCTAGCTTGTCCCATCGTCCATCGTCTTA
TCCTCCTCCTCCCTTCGCGTGTCGCATTATCCCCCTCTCGTGTTTCCCTC
CCCGATCCCCGTGTGCTATACACGCCGCGCGGTAACTCCCAGCCCCTGGA
AGAAGGCGGGTAGTGTTAATTCGTGGCGCAAGTGGCTGCACATGGAGAGC
GACGAACCGCTGCCCGAGTCCGCGGTGACGGTGTTCCGAATCGTGCAGGC
CAATTGGGCGTCGCCGGAGAAAATAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig68260:395..1872-

>mRNA_H-elongata_contig68260.14450.1 ID=mRNA_H-elongata_contig68260.14450.1|Name=mRNA_H-elongata_contig68260.14450.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig68260:395..1872- (Himanthalia elongata Himel1 dioecious)
AGAGGACCGCGCGCGGCGGACGTGGCGAGCGTACGAGTTTATCCAGCTGC
CGGCGCGGAACCGTACGCTGGACTCGGAGGTGTTGGGCATGAACGTCGGC
TTGGCGCCCAACGACACCCGTCTCGATGTGATCGTCGACTACGGCAGGAA
GGAAGAAGCCCCGAGAGGACCGCGCGCGGCGGACGTGGCGAGCGTACGAG
TTTATCCAGCTGCCGGCGCGGAACCGTACGCTGGACTCGGAGGTGTTGGG
CATGAACGTCGGCTTGGCGCCCAACGACACCCGTCTCGATGTGATCGTCG
ACTACGGCAGGAAGGAAGAAGCCCCGGAAGTTGGGTCGCGGCTGTTAGAC
ATGGTGACGGACGTCTCGAAAGAGGCGAGCGAGGTCTTCGGCTACGAGGA
CGACGCTTCCACGGGAGGGGAAAAGCTTGGGAAGTTGGGTCGCGGCTGTT
AGACATGGTGACGGACGTCTCGAAAGAGGCGAGCGAGGTCTTCGGCTACG
AGGACGACGCTTCCACGGGAGGGGAAAAGCTTGGCCCCTGGAAGAAGGCG
GGTAGCCCCTGGAAGAAGGCGGGTAG
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