mRNA_H-elongata_contig68188.14445.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68188.14445.1
Unique NamemRNA_H-elongata_contig68188.14445.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Match: D8LI35_ECTSI (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI35_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.290e-29
Identity = 57/62 (91.94%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:    1 KVRVKFVTKIPSIRVTETPVAVPETLQRYGLSEVVNHLLGRDPPTPFDVLVRGRFLRSSLRA 186
            KVRVKFVTK+PSIRVTETPVAVPE+LQRYGLSEVVNHLLGRDPPTPFD+LV GRFLRSSLR+
Sbjct:   15 KVRVKFVTKVPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRS 76
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BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Match: A0A7S4DK03_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DK03_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 6.780e-18
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 KVRVKFVTKIPSIRVTETPVAVPETLQRYGLSEVVNHLLGRDPPTPFDVLVRGRFL 168
            KVRVKFVTKI SIRVTE P+AVP +L RYGLSEVVNHLL R+ P P + LV G+ L
Sbjct:    9 KVRVKFVTKIASIRVTEVPIAVPTSLGRYGLSEVVNHLLAREEPIPLEFLVEGKGL 64
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BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Match: A0A2J7ZLP8_9CHLO (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZLP8_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 9.440e-18
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 KVRVKFVTKIP-SIRVTETPVAVPETLQRYGLSEVVNHLLGRDPPTPFDVLVRGRFLRSSLRA 186
            +V VKFVTK+P S+RV ETPVAVP TL+RYGLS+++NHLL  DPP PFD LV G  +R SL A
Sbjct:    6 QVLVKFVTKLPISLRVPETPVAVPSTLRRYGLSQIINHLLALDPPRPFDFLVNGELVRCSLEA 68
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BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Match: A0A836CE58_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE58_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.230e-16
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 KVRVKFVTKIPSIRVTETPVAVPETLQRYGLSEVVNHLLGRDP-------------------PTPFDVLVRGRFLRSSL 180
            +VRVKFVTK+ SIRVT+ P+AVPETL RYGLSEVVNHLLG +                    P PFD+L+ GRFLR+SL
Sbjct:   29 QVRVKFVTKLASIRVTDLPIAVPETLGRYGLSEVVNHLLGLNADTSAAAAAPHDAAPPSSKAPIPFDILIDGRFLRTSL 107
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BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Match: A0A836BU45_9CHLO (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BU45_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 2.270e-16
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 KVRVKFVTKIPS-IRVTETPVAVPETLQRYGLSEVVNHLLGRDPPTPFDVLVRGRFLRSSLRA 186
            +V VKF+TK+P  +RV ETPVAVP +L+RYGLS+V+NHLL  D P PFD LV G+ LRSSL A
Sbjct:    7 QVLVKFITKLPPHLRVPETPVAVPASLRRYGLSQVINHLLALDAPRPFDFLVSGQLLRSSLEA 69
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BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Match: A0A7S2UZW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZW3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.580e-16
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 KVRVKFVTKIPSIRVTETPVAVPETLQRYGLSEVVNHLLGRDPPTPFDVLVRGRFLRSSL 180
            KVRV+FVTK+PS++VTE P+AVP  L RYGLSEVVNHLLG +   PFD LV+    R+SL
Sbjct:   10 KVRVRFVTKVPSLKVTEMPIAVPIKLARYGLSEVVNHLLGVEKHVPFDFLVQDPRSRASL 69
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BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Match: WDR12_CHLRE (Ribosome biogenesis protein WDR12 homolog n=4 Tax=Chlamydomonas TaxID=3052 RepID=WDR12_CHLRE)

HSP 1 Score: 79.0 bits (193), Expect = 1.040e-15
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 KVRVKFVTKIPS-IRVTETPVAVPETLQRYGLSEVVNHLLGRDPPTPFDVLVRGRFLRSSL 180
            +V VKFVTK+P+ +RV ETPVAVP  L+RYGLS+++NHLL  DPP PFD L+ G  +R SL
Sbjct:    6 QVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLLALDPPRPFDFLIDGELVRKSL 66
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BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Match: A0A5D6YFB0_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFB0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.630e-15
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 KVRVKFVTKIPSIRVTETPVAVPETLQRYGLSEVVNHLLGRDPPTPFDVLVRGRFLRSSL 180
            +VRVKFVTK  +IRVTETP AVP  L R GLS+VVNHLL    P PFD LV G+FLR+SL
Sbjct:   10 QVRVKFVTKDAAIRVTETPFAVPARLNRQGLSQVVNHLLNLPVPRPFDFLVDGQFLRTSL 69
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BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Match: D0NDP0_PHYIT (Ribosome biogenesis protein WDR12 homolog n=12 Tax=Phytophthora TaxID=4783 RepID=D0NDP0_PHYIT)

HSP 1 Score: 77.0 bits (188), Expect = 4.880e-15
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 KVRVKFVTKIPSIRVTETPVAVPETLQRYGLSEVVNHLLGR-DPPTPFDVLVRGRFLRSSL 180
            +VRVKFVTK  SIRVTETP AVP  L R GLS+VVNHLL   D P PFD L+ G FLRSSL
Sbjct:    7 QVRVKFVTKDGSIRVTETPFAVPSRLNRRGLSQVVNHLLATGDSPRPFDFLIDGLFLRSSL 67
[Close]
BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Match: G5A136_PHYSP (Ribosome biogenesis protein WDR12 homolog n=4 Tax=Phytophthora TaxID=4783 RepID=G5A136_PHYSP)

HSP 1 Score: 77.0 bits (188), Expect = 4.960e-15
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 KVRVKFVTKIPSIRVTETPVAVPETLQRYGLSEVVNHLLGR-DPPTPFDVLVRGRFLRSSL 180
            +VRVKFVTK  SIRVTETP AVP  L R GLS+VVNHLL   D P PFD L+ G FLRSSL
Sbjct:    7 QVRVKFVTKDASIRVTETPFAVPTRLNRRGLSQVVNHLLATGDKPRPFDFLIDGLFLRSSL 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68188.14445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI35_ECTSI2.290e-2991.94Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
A0A7S4DK03_HETAK6.780e-1871.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2J7ZLP8_9CHLO9.440e-1866.67Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
A0A836CE58_9STRA1.230e-1656.96Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
A0A836BU45_9CHLO2.270e-1665.08Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
A0A7S2UZW3_9STRA4.580e-1665.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
WDR12_CHLRE1.040e-1562.30Ribosome biogenesis protein WDR12 homolog n=4 Tax=... [more]
A0A5D6YFB0_9STRA2.630e-1568.33Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
D0NDP0_PHYIT4.880e-1570.49Ribosome biogenesis protein WDR12 homolog n=12 Tax... [more]
G5A136_PHYSP4.960e-1570.49Ribosome biogenesis protein WDR12 homolog n=4 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68188contigH-elongata_contig68188:3111..3296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue3.9e-24
Seed eggNOG ortholog2880.D8LI35
Preferred nameYTM1
KEGG koko:K11578,ko:K14863
GOsGO:0000151,GO:0000460,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009506,GO:0009605,GO:0009607,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022613,GO:0030054,GO:0030447,GO:0030684,GO:0030686,GO:0030687,GO:0031461,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0036170,GO:0036180,GO:0040007,GO:0042221,GO:0042254,GO:0042273,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044182,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046689,GO:0050896,GO:0051276,GO:0051716,GO:0055044,GO:0070013,GO:0070545,GO:0071496,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG0313@1,KOG0313@2759
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-04_003080.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.1578658-CDS-H-elongata_contig68188:3110..32961622931075.1578658-CDS-H-elongata_contig68188:3110..3296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68188 3111..3296 +
1691679687.5389988-CDS-H-elongata_contig68188:3110..32961691679687.5389988-CDS-H-elongata_contig68188:3110..3296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68188 3111..3296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68188.14445.1prot_H-elongata_contig68188.14445.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68188 3111..3296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68188.14445.1

>prot_H-elongata_contig68188.14445.1 ID=prot_H-elongata_contig68188.14445.1|Name=mRNA_H-elongata_contig68188.14445.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
KVRVKFVTKIPSIRVTETPVAVPETLQRYGLSEVVNHLLGRDPPTPFDVL
VRGRFLRSSLRA
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mRNA from alignment at H-elongata_contig68188:3111..3296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68188.14445.1 ID=mRNA_H-elongata_contig68188.14445.1|Name=mRNA_H-elongata_contig68188.14445.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig68188:3111..3296+ (Himanthalia elongata Himel1 dioecious)
AAGGTCCGCGTGAAGTTCGTCACCAAGATCCCTTCCATCCGAGTCACAGA
GACGCCTGTGGCGGTACCGGAGACCCTCCAGCGCTATGGGCTGTCCGAGG
TGGTGAATCACCTGCTGGGCCGCGATCCGCCGACGCCGTTCGACGTGCTC
GTCAGGGGCCGGTTCCTGCGGAGCTCGCTGCGAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig68188:3111..3296+

>mRNA_H-elongata_contig68188.14445.1 ID=mRNA_H-elongata_contig68188.14445.1|Name=mRNA_H-elongata_contig68188.14445.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig68188:3111..3296+ (Himanthalia elongata Himel1 dioecious)
AAGGTCCGCGTGAAGTTCGTCACCAAGATCCCTTCCATCCGAGTCACAGA
GACGCCTGTGGCGGTACCGGAGACCCTCCAGCGCTATGGGCTGTCCGAGG
TGGTGAATCACCTGCTGGGCCGCGATCCGCCGACGCCGTTCGACGTGCTC
GTCAGGGGCCGGTTCCTGCGGAGCTCGCTGCGAGCAAAGGTCCGCGTGAA
GTTCGTCACCAAGATCCCTTCCATCCGAGTCACAGAGACGCCTGTGGCGG
TACCGGAGACCCTCCAGCGCTATGGGCTGTCCGAGGTGGTGAATCACCTG
CTGGGCCGCGATCCGCCGACGCCGTTCGACGTGCTCGTCAGGGGCCGGTT
CCTGCGGAGCTCGCTGCGAGCA
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