mRNA_H-elongata_contig68187.14444.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: D8LEZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ5_ECTSI) HSP 1 Score: 418 bits (1074), Expect = 4.500e-145 Identity = 203/285 (71.23%), Postives = 238/285 (83.51%), Query Frame = 1
Query: 4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTLLRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRVL 858
KD ++S+FGS VYTGQPLDTIKVRMQ RPDA+S FQCLRRTLAEES+ SLWKGS PAL G++ EN+VAFGVN+QLKR+FPD++G +APWWQPI FGG+TG+FT+ ++CPSDVIK KVQVG S+ A V A A E GLPVLNA +M H+LRTQG RGLFVGLGAQF RDVP+YAA FGTYET+V++GK+LPY++ E LY AGGMAGVVGWA MP+DS KSIIQT+ KP++LLRT+Q V TKGW+ALF GLNAAL RAFPANAALFLGYE+VRR L
Sbjct: 16 KDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDKDGSSAPWWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVA-VSANA-EAKGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQTTDKPESLLRTLQTVVRTKGWQALFIGLNAALARAFPANAALFLGYEIVRRAL 298
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A836CAY2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY2_9STRA) HSP 1 Score: 253 bits (645), Expect = 3.060e-80 Identity = 135/285 (47.37%), Postives = 179/285 (62.81%), Query Frame = 1
Query: 7 DAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQ-TSTKPDTLLRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRVL 858
+A AS+FGS +YTGQPLDTIKVR+Q P+A+S QCLR T+++E V SLWKG+ PALSG++ ENIVAF +NK+LK L+P + AA QP+A+G +TG T+ LCP DVIKC+VQV A+ T NA +MA+ ++RT+G RG + GL AQ RD +++ FG Y+ +V + P E Y+ AGG+AGV GW + MP D KS +Q T P +L + + G RALF G+ +RAFPANAALFLGYEV +R L
Sbjct: 10 EAAASIFGSFACIYTGQPLDTIKVRIQATPEAFSGAMQCLRTTISQEGVASLWKGATPALSGAVVENIVAFAINKELKLLWPPSDRHAAV--QPVAYGAVTGAVTAVALCPFDVIKCRVQV--------------ARGTAARRAPNAVEMAQLMVRTEGMRGFYRGLRAQVARDALFFSMFFGVYDVLVEQAMRRT-SFPREVAYIGAGGLAGVAGWLLSMPFDVLKSRMQVTPHGPRSLSAVARPLVAAGGPRALFAGVTVTCVRAFPANAALFLGYEVAKRNL 277
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A4D9CU68_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU68_9STRA) HSP 1 Score: 238 bits (607), Expect = 2.800e-74 Identity = 132/269 (49.07%), Postives = 165/269 (61.34%), Query Frame = 1
Query: 100 AYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLAA----------------PWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTLLRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRVL 858
A V + + EE +R+LWKGSVPAL G++SEN VAF VN+QLKR+ D EG P GG TG+FTS LCPSDVIKCKVQV ++ G ++A +M HVL+TQG +GLFVGLGAQF RD+P+YA FGTYE + K+ +P E Y+ AGG+AGV GWA MPID AKSIIQTS P +L+ T+ V +T+G AL++GL A+ RAFPANAALFLGYE+ R +L
Sbjct: 38 AAKDVLSSIVGSAIEEGLRALWKGSVPALVGAVSENAVAFSVNQQLKRILADLEGYGLGNESNQESSKAEAKEESLVVPFLTGGFTGIFTSAALCPSDVIKCKVQVSRAML------------KTGETAMDAQEMLVHVLKTQGVKGLFVGLGAQFARDIPFYAFFFGTYELSLVALKAYT-TMPQEGAYLVAGGLAGVAGWAAVMPIDMAKSIIQTSPNPKSLIPTMMDVAQTRGPMALYSGLGVAVFRAFPANAALFLGYELAREIL 293
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A7S2S5V7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5V7_9STRA) HSP 1 Score: 219 bits (559), Expect = 5.620e-67 Identity = 125/293 (42.66%), Postives = 170/293 (58.02%), Query Frame = 1
Query: 1 VKDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFP----DEEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTLLR---TIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRVL 858
+KD ASV G++ YTGQP DT+KVR+Q RPD Y+ + Q +T E V +LWKGSV ++G I EN AFGVN+QLKR+FP D +G A +QP G +TG S LCPS+++K + Q+ A AK T GL + + + V R QG GL+ G+ AQ RD +YA FG+YE +V + +P E + +GG+AG++GW MP+D KSIIQ + + +V T+G LF+G AL+R+FPANAALFLGYE+ RR L
Sbjct: 16 LKDVAASVVGAVACCYTGQPFDTVKVRLQARPDEYTGMMQTFYKTAEAEGVAALWKGSVAVVTGMIMENAAAFGVNEQLKRVFPQSAQDLDGGAQGLFQPFMLGALTGSLVSFALCPSEIVKTRTQLEV----------ANAK-TSGLKAPTSMDILKKVWRLQGMAGLYTGIDAQIARDGLFYAVFFGSYEILVRAFRKHT-SLPDEANFFISGGLAGMLGWGFVMPVDVPKSIIQGDWRARPVGDFGGAFSEVFRTRGLSGLFSGSFPALVRSFPANAALFLGYELTRRGL 296
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A7S2L363_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L363_9STRA) HSP 1 Score: 201 bits (512), Expect = 6.010e-60 Identity = 116/291 (39.86%), Postives = 167/291 (57.39%), Query Frame = 1
Query: 4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDE---EGLAAP-WWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTL----LRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRR 852
+D ++ GS+ YTGQP DT+KVRMQT P A+ SV + ++ E + +LWKG+VP G ++EN +AFGVN+ LKR FPDE + P +P G ITG ++T+L PS+V+K K QV VG ++A + + +++ QG R LF+G AQ +RD+P+YA FGTYE ++ +P E + +GG AG++GWA MP D K+ +Q S + I+ VRE +G AL+TGL + RAFPANAALFLG E+ ++
Sbjct: 16 RDIFSASIGSVACCYTGQPFDTVKVRMQTSPAAFPSVLFTSKSIVSNEGIPALWKGAVPTALGMVAENAMAFGVNEALKRTFPDEAKSDPTKRPDLMRPFLMGAITGCCSATVLLPSEVVKAKTQV-----------------VVGNTGASSADIYKKMMKRQGIRSLFIGFDAQIMRDMPFYAFFFGTYELNCYLFRTFVPSMPEELNFFLSGGFAGMLGWAAAMPFDVPKTNVQASWDSKVVGSYFPELIRIVRE-RGVLALYTGLIPTIARAFPANAALFLGVEMGKK 288
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A7S2URT5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URT5_9STRA) HSP 1 Score: 201 bits (511), Expect = 7.770e-60 Identity = 116/293 (39.59%), Postives = 161/293 (54.95%), Query Frame = 1
Query: 4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLA-----APWWQPIAFGGITGLFTSTILCPSDVIKCKVQV--GTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQT--STKP-DTLLRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRR 852
+D ++ GS+ YTGQPLDTIKVRMQT P Y+ V Q +T+ EE V +LWKG+VP G EN VAFGVN+ LKR FPD+ +P G ITG ++ +L PS+VIK K QV G+S L++ + + +++ QG R LF G AQ +RD P+YA FG YE ++ +P E + +GG+AG+ GW + MP D K+ +Q TK + + K+ +G L++GL L+RAFPANAALFLG E+ +R
Sbjct: 12 RDVFSATLGSVCCCYTGQPLDTIKVRMQTNPHLYTGVIQTFSKTVGEEGVAALWKGAVPTAVGMALENAVAFGVNEALKRAFPDDPAAKNADERPDLLKPFLMGSITGCCSAIVLLPSEVIKAKTQVEIGSS--------------------LSSKDILQKMIKKQGVRSLFCGFDAQLMRDAPFYAVFFGGYELSCYLFRTHVPSMPEELNFFLSGGLAGMFGWTVAMPFDVPKTNVQARYDTKVFGSYFPEMIKIARERGVVGLYSGLGPTLVRAFPANAALFLGVEMGKR 284
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A7S4T4E9_9STRA (Hypothetical protein n=4 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S4T4E9_9STRA) HSP 1 Score: 198 bits (504), Expect = 9.820e-59 Identity = 114/298 (38.26%), Postives = 167/298 (56.04%), Query Frame = 1
Query: 4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEG---------LAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTLL------RTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRR 852
+D ++ GS+ YTGQP DT+KVRMQT P+ YSS+++ T+ EE +++ WKG+VP G +EN +AFGVN+ LKR FPD +P G ITG ++ +L PS+V+K K QV VG V ++ + + ++R QG++ LF GL AQ +RD P+YA FG+YE ++ +P E Y +GG+AG++GW MP D K+ +Q+ + DT + + IQ +E +G L+ GL L+RAFPANAALFLG E+ +R
Sbjct: 12 RDIFSATVGSIFCCYTGQPFDTVKVRMQTNPELYSSIYKTATTTMGEEGIKAFWKGAVPTAMGMAAENAMAFGVNEALKRAFPDPNKDQFDHNGAQRRPDLLRPFLMGAITGCCSALVLLPSEVVKAKTQV-----------------AVGTDV-SSNDIFKKMVRKQGYKSLFCGLDAQLMRDGPFYAFFFGSYEMSCFLFRTYVPSMPEELNYFISGGLAGMLGWTAAMPFDVPKTNVQS--RYDTQIVGSYFPQMIQITKE-RGILGLYNGLGPTLVRAFPANAALFLGVEMGKR 288
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A1Z5JYC1_FISSO (Solute carrier family 25 (Mitochondrial ornithine transporter) member 2/15 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYC1_FISSO) HSP 1 Score: 197 bits (501), Expect = 2.540e-58 Identity = 110/294 (37.41%), Postives = 161/294 (54.76%), Query Frame = 1
Query: 4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPD-----EEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQV--GTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPD---TLLRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRV 855
+D ++ GS+ Y GQP DT+KVRMQT P YS+V + +E V + WKG+VP G +EN +AFGVN LKR FPD EEG + +P A G ITG ++ +L PS+++K K+QV G ++T ++ + +L+ QG+ G+F GL AQ RD +YA FG YE ++ +P E Y +GG+AG VGW + MP D K+ +Q S T + + ++ + +G L++GL L+RAFPANAALFLG E +++
Sbjct: 12 RDIFSATIGSICCCYVGQPFDTVKVRMQTNPSIYSNVMASTQAIWMQEGVTAFWKGAVPTAMGMAAENAMAFGVNAALKRAFPDPVTQSEEGPPS-LLKPFAMGAITGCCSAFVLLPSEIVKAKLQVVVGKNITVQ--------------------EVIQSILKRQGYSGMFAGLDAQLARDSSFYAVFFGGYELFCYGFRTFVPSMPDELNYFISGGLAGCVGWTVAMPFDVPKTNVQASYDSKIVGTYVPELLRIAKQRGIGGLYSGLGPTLVRAFPANAALFLGVETGKKL 284
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: B8C9S7_THAPS (Mitochondrial carrier (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9S7_THAPS) HSP 1 Score: 195 bits (496), Expect = 8.450e-58 Identity = 110/287 (38.33%), Postives = 157/287 (54.70%), Query Frame = 1
Query: 4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTL---LRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRV 855
+D ++ GS+ YTGQP DT+KVRMQT P + SV + L E + +LWKG+VP G + EN +AFGVN+ LKR FPD G Q G ITG ++T+L PS+++K K QV VG ++ ++ + ++R G R LFVG AQ +RD P+YA FGTYE ++ +P E Y +GG AG++GW MP D K+ +Q S + + + ++ +G AL+TGL + RAFPANAALFLG E +++
Sbjct: 4 RDIFSASIGSVACCYTGQPFDTVKVRMQTNPSLFPSVAFTTKSILKNEGMGALWKGAVPTAMGMVLENAMAFGVNEALKRTFPD--GSKEDPTQRPDLGAITGCCSATVLLPSEIVKAKTQV-----------------VVGNVSASSTEIYKKMIRQSGIRSLFVGFDAQIMRDAPFYAFFFGTYELNCYLFRTYVPSMPEELNYFLSGGFAGMLGWTAAMPFDVPKTNVQASWESKVVGSYFPELLRIVRERGVLALYTGLVPTIARAFPANAALFLGVETGKKI 271
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A1E7EQV4_9STRA (Mitochondrial carrier n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQV4_9STRA) HSP 1 Score: 194 bits (492), Expect = 5.850e-57 Identity = 110/289 (38.06%), Postives = 155/289 (53.63%), Query Frame = 1
Query: 4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPD-------EEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTL---LRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYE 840
+D ++ GS+L Y GQP DTIKV+MQT PD +S V + L E V + WKG+VP G + EN +AFGVN LKR FPD +EG + +P A G ITG ++T+L PS++IKCK Q+ T + ++Q+ + +++ QG R FVG AQ RD +YA FG YE ++ +P E Y +GG+AG+ W + MP D K+ +Q+ + + +V + +G L+ GL LIRAFPANAALFLG E
Sbjct: 13 RDLFSAAIGSVLCCYVGQPFDTIKVKMQTNPDQFSHVVGSTNQILKNEGVAAFWKGAVPTAGGMVLENCMAFGVNAALKRAFPDTNNDGDIKEGPPS-LLKPFAMGAITGCCSATVLLPSEIIKCKTQISTE------------------RHITSSQIVKQMMKKQGMRSFFVGFDAQLCRDSCFYALFFGGYELSCYTFRTFVPSMPDELNYFMSGGIAGMGAWFVAMPFDVPKTNVQSRYDTKVMGSYFPELIRVAKQRGIGGLYAGLGPTLIRAFPANAALFLGVE 282 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68187.14444.1 >prot_H-elongata_contig68187.14444.1 ID=prot_H-elongata_contig68187.14444.1|Name=mRNA_H-elongata_contig68187.14444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp VKDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESback to top mRNA from alignment at H-elongata_contig68187:1733..2626- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68187.14444.1 ID=mRNA_H-elongata_contig68187.14444.1|Name=mRNA_H-elongata_contig68187.14444.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=894bp|location=Sequence derived from alignment at H-elongata_contig68187:1733..2626- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68187:1733..2626- >mRNA_H-elongata_contig68187.14444.1 ID=mRNA_H-elongata_contig68187.14444.1|Name=mRNA_H-elongata_contig68187.14444.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at H-elongata_contig68187:1733..2626- (Himanthalia elongata Himel1 dioecious)back to top |