mRNA_H-elongata_contig68117.14440.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68117.14440.1
Unique NamemRNA_H-elongata_contig68117.14440.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68117.14440.1 vs. uniprot
Match: D8LEV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV7_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.260e-21
Identity = 84/221 (38.01%), Postives = 112/221 (50.68%), Query Frame = 1 
Query:    1 AAINLSYSLRRYAGIQSYVLPLDPDLPDYLANV------GRSERAALASAAAAASTSTPASGMPPLSDPSLVDNTD--RKPFGRRSAVEARSDSREGRRL-------QKKSAFLRGVDGGVERRLDPVMHGWSPPVSGPLAQVQQRFNDRPSREQFRELSARGGRFVRTSLQCPTELVLLVVDGRRQAELLGPLYRGLVESAVAGHAEGRDVGAEVFVAVV 618
            AA+ LSYSLRRYAG+ SYVLP DP LP+Y  N+      G+ +   ++ AA AA+ +   +           D  D  R+   R  AV A         L        + S  L+   GG   R D    G      G  + + +R ++   R QFR+LSARGG+F RT+   P +LVL+VVDGR QAELLGPLYR +VE    G        AEVF+ ++
Sbjct:  360 AALALSYSLRRYAGVPSYVLPSDPALPEYSGNMSAGLPPGKLDIQGISKAAEAAAVAAGFARRKKTFRRRTRDAPDQSRRRLARDGAVAASXXXXXXXXLGSLASPSDRNSRALQAASGG---RGDASARG---DTDGSPSSLVRRLDEPQLRAQFRDLSARGGQFFRTADHSPEDLVLIVVDGRDQAELLGPLYRQIVE----GGXXXXXXXAEVFIVLI 570
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BLAST of mRNA_H-elongata_contig68117.14440.1 vs. uniprot
Match: A0A6H5KSC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.010e-20
Identity = 84/204 (41.18%), Postives = 109/204 (53.43%), Query Frame = 1 
Query:    1 AAINLSYSLRRYAGIQSYVLPLDPDLPDYLANV------GRSERAALASAAAAASTSTPASGMPPLSDPSLVDNTDRKPFGRRS---AVEARSDSREGRRL-------QKKSAFLRGVDGG---VERRLDPVMHGWSPPVSGPLAQVQQRFNDRPSREQFRELSARGGRFVRTSLQCPTELVLLVVDGRRQAELLGPLYRGLVE 555
            AA+ LSYSLRRYAG+ SYVLP DP LP+Y  N+      G+ +   ++ AA AA+    A+G              +K F RR+   AV A +  +  RRL        + S  L+   GG      R D          S P + V+ R ++   R QFR+LSARGG+F RT+   P  LVL+VVDGR QAELLGPLYR +VE
Sbjct:  478 AALALSYSLRRYAGVPSYVLPSDPALPEYSGNMSAGLPPGKLDVQGISKAAEAAAI---AAGFARR----------KKMFRRRARLGAVVASAPDQSRRRLGSLASPSDRNSRSLQAASGGRGDASAREDTD--------SSPSSLVR-RLDEPQLRAQFRDLSARGGQFFRTADHSPENLVLIVVDGRDQAELLGPLYREIVE 659
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68117.14440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEV7_ECTSI4.260e-2138.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSC9_9PHAE5.010e-2041.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68117contigH-elongata_contig68117:477..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size648
Cds size648
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931074.6754668-CDS-H-elongata_contig68117:476..11241622931074.6754668-CDS-H-elongata_contig68117:476..1124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68117 477..1124 +
1691679687.331122-CDS-H-elongata_contig68117:476..11241691679687.331122-CDS-H-elongata_contig68117:476..1124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68117 477..1124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68117.14440.1prot_H-elongata_contig68117.14440.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68117 477..1124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68117.14440.1

>prot_H-elongata_contig68117.14440.1 ID=prot_H-elongata_contig68117.14440.1|Name=mRNA_H-elongata_contig68117.14440.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=216bp
AAINLSYSLRRYAGIQSYVLPLDPDLPDYLANVGRSERAALASAAAAAST
STPASGMPPLSDPSLVDNTDRKPFGRRSAVEARSDSREGRRLQKKSAFLR
GVDGGVERRLDPVMHGWSPPVSGPLAQVQQRFNDRPSREQFRELSARGGR
FVRTSLQCPTELVLLVVDGRRQAELLGPLYRGLVESAVAGHAEGRDVGAE
VFVAVVGLETYFEHI*
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mRNA from alignment at H-elongata_contig68117:477..1124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68117.14440.1 ID=mRNA_H-elongata_contig68117.14440.1|Name=mRNA_H-elongata_contig68117.14440.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=648bp|location=Sequence derived from alignment at H-elongata_contig68117:477..1124+ (Himanthalia elongata Himel1 dioecious)
GCGGCGATCAACCTGTCGTACAGCCTCCGGCGGTACGCGGGCATCCAGAG
CTACGTGCTGCCGCTCGACCCCGACTTGCCCGACTACCTCGCGAACGTTG
GTCGCTCGGAACGCGCGGCTCTGGCCTCGGCAGCCGCCGCCGCCTCTACA
TCTACCCCCGCGTCTGGGATGCCTCCATTATCTGACCCATCGCTTGTGGA
CAATACCGATAGGAAACCATTTGGTCGACGATCGGCGGTCGAAGCTCGGT
CCGACTCGAGGGAGGGGAGGAGACTGCAGAAGAAGAGCGCCTTCCTCCGC
GGTGTCGATGGCGGTGTGGAGCGGCGTCTCGACCCAGTGATGCACGGTTG
GTCACCTCCGGTTTCGGGACCTCTGGCGCAGGTACAGCAGCGGTTCAATG
ACCGCCCGTCGAGAGAGCAGTTTCGGGAGCTGTCGGCCAGGGGCGGGCGC
TTCGTCCGAACGTCTCTCCAGTGCCCGACCGAGCTCGTGCTGCTCGTGGT
GGACGGGCGACGGCAGGCGGAGCTTCTGGGGCCGCTGTACCGGGGTCTTG
TTGAGTCAGCGGTGGCGGGTCACGCCGAAGGGAGGGACGTTGGAGCAGAG
GTTTTCGTCGCGGTGGTGGGATTGGAAACATATTTTGAACATATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig68117:477..1124+

>mRNA_H-elongata_contig68117.14440.1 ID=mRNA_H-elongata_contig68117.14440.1|Name=mRNA_H-elongata_contig68117.14440.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1296bp|location=Sequence derived from alignment at H-elongata_contig68117:477..1124+ (Himanthalia elongata Himel1 dioecious)
GCGGCGATCAACCTGTCGTACAGCCTCCGGCGGTACGCGGGCATCCAGAG
CTACGTGCTGCCGCTCGACCCCGACTTGCCCGACTACCTCGCGAACGTTG
GTCGCTCGGAACGCGCGGCTCTGGCCTCGGCAGCCGCCGCCGCCTCTACA
TCTACCCCCGCGTCTGGGATGCCTCCATTATCTGACCCATCGCTTGTGGA
CAATACCGATAGGAAACCATTTGGTCGACGATCGGCGGTCGAAGCTCGGT
CCGACTCGAGGGAGGGGAGGAGACTGCAGAAGAAGAGCGCCTTCCTCCGC
GGTGTCGATGGCGGTGTGGAGCGGCGTCTCGACCCAGTGATGCACGGTTG
GTCACCTCCGGTTTCGGGACCTCTGGCGCAGGTACAGCAGCGGTTCAATG
ACCGCCCGTCGAGAGAGCAGTTTCGGGAGCTGTCGGCCAGGGGCGGGCGC
TTCGTCCGAACGTCTCTCCAGTGCCCGACCGAGCTCGTGCTGCTCGTGGT
GGACGGGCGACGGCAGGCGGAGCTTCTGGGGCCGCTGTACCGGGGTCTTG
TTGAGTCAGCGGTGGCGGGTCACGCCGAAGGGAGGGACGTTGGAGCAGAG
GTTTTCGTCGCGGTGGTGGGATTGGAAACATATTTTGAACATATTTGAGC
GGCGATCAACCTGTCGTACAGCCTCCGGCGGTACGCGGGCATCCAGAGCT
ACGTGCTGCCGCTCGACCCCGACTTGCCCGACTACCTCGCGAACGTTGGT
CGCTCGGAACGCGCGGCTCTGGCCTCGGCAGCCGCCGCCGCCTCTACATC
TACCCCCGCGTCTGGGATGCCTCCATTATCTGACCCATCGCTTGTGGACA
ATACCGATAGGAAACCATTTGGTCGACGATCGGCGGTCGAAGCTCGGTCC
GACTCGAGGGAGGGGAGGAGACTGCAGAAGAAGAGCGCCTTCCTCCGCGG
TGTCGATGGCGGTGTGGAGCGGCGTCTCGACCCAGTGATGCACGGTTGGT
CACCTCCGGTTTCGGGACCTCTGGCGCAGGTACAGCAGCGGTTCAATGAC
CGCCCGTCGAGAGAGCAGTTTCGGGAGCTGTCGGCCAGGGGCGGGCGCTT
CGTCCGAACGTCTCTCCAGTGCCCGACCGAGCTCGTGCTGCTCGTGGTGG
ACGGGCGACGGCAGGCGGAGCTTCTGGGGCCGCTGTACCGGGGTCTTGTT
GAGTCAGCGGTGGCGGGTCACGCCGAAGGGAGGGACGTTGGAGCAGAGGT
TTTCGTCGCGGTGGTGGGATTGGAAACATATTTTGAACATATTTGA
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