mRNA_H-elongata_contig6808.14437.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A6H5LB61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB61_9PHAE) HSP 1 Score: 391 bits (1004), Expect = 1.460e-133 Identity = 203/285 (71.23%), Postives = 240/285 (84.21%), Query Frame = 1
Query: 1 TMKVESAPDPDRYGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDE 855
T VE A DPDRY AA+ +TA A GA FGAG+N LG +KA+Q+ AGY+VEMSLSVDNLFVFLLLFKFFKVPF++QNRVL+YGI GAVVMRAIFI LGE MS+F P+LLGFA IL +SSY LLSE E D EDL +N +++ S+TLDAT+SYDG+KFFT V+GV+RATPLLLVLVCVELSD++FA+DSIPAVFAVTKDPFIVYTSNIWAI+NLRSL+T+L+SAV+DL YLRPAVA VLGFVG KIGGEF GY + T++SL II G+L G+AASL G++
Sbjct: 66 TTMVERA-DPDRYVAAIATTAAATIGAIAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDAQNRVLTYGIIGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYNVSTELSLEIITGVLAAGVAASLILPGEK 349
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A835YKR2_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR2_9STRA) HSP 1 Score: 335 bits (858), Expect = 2.830e-111 Identity = 178/285 (62.46%), Postives = 223/285 (78.25%), Query Frame = 1
Query: 4 MKVESAPDPDRYGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
M + PDPDRY A+ ++ +++ AA FGAGI+ + G+E AV Y AGY+VE SLSVDNLFVFLLLF++F VP Q RVL +GI GAV++R +FIALGE A+ F+PVLLGFAAIL S+YKL +E E E DL +N +V +S L ATD YDG+KFFT V+GV+RATPLLLVLVCVELSD++FA+DSIPAVF T+DPF+VYTSNI+AI+NLRSLYT+LS+AV DL+YLRPAVA VL FVGAK+ E+ GYE+ T +SL +I LLG G+A SL +GDE+
Sbjct: 72 MPRDETPDPDRYKVAVRNSLISIAAAAAFGAGISVVQGSEAAVGYFAGYVVEQSLSVDNLFVFLLLFEYFNVPISYQQRVLRWGIVGAVILRGVFIALGEAALESFQPVLLGFAAILMVSAYKLFTEEEGGEA-DLTDNQVVQFSSKILKATDQYDGDKFFTMVDGVRRATPLLLVLVCVELSDLVFAVDSIPAVFGCTRDPFLVYTSNIFAIVNLRSLYTVLSNAVGDLEYLRPAVAGVLAFVGAKLAAEYFGYEVDTLLSLGVISTLLGGGVALSLL-KGDEE 354
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A835YPV1_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV1_9STRA) HSP 1 Score: 328 bits (841), Expect = 1.260e-109 Identity = 174/283 (61.48%), Postives = 217/283 (76.68%), Query Frame = 1
Query: 10 VESAPDPDRYGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
+E PDP+RY AL +T L++ GAA+FGAGI Y+ GTE A++Y AGYIVE SLSVDNLFVFLLLF++F VP Q RVL +GI GAV++R IF+ALG+ A+ F+PVLL FA IL SSYKLL+EG E E L N IV V+ L AT+ YDG++FFT V+G++RATPLLLVLVCVE SD++FA+DSIPAVF VTKDP IVY+SNI+AI+NLRSLYT+LS+AV DL YLRPAVA+VL FVG K+G E+ + T +SL II +L G+ SL ER + +
Sbjct: 5 LEEPPDPNRYATALRNTLLSIAGAALFGAGITYVKGTELALEYFAGYIVEQSLSVDNLFVFLLLFEYFSVPVAYQGRVLQWGIIGAVILRGIFVALGQAALESFQPVLLIFAGILLVSSYKLLTEGGDGEEESLHNNKIVQVSKRLLRATEEYDGDRFFTMVDGMRRATPLLLVLVCVEASDLVFAVDSIPAVFGVTKDPLIVYSSNIFAILNLRSLYTVLSTAVGDLVYLRPAVALVLAFVGLKLGAEYFSVTVDTVLSLGIISTILAGGVGLSLYERRNSE 287
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A7S2V8N4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8N4_9STRA) HSP 1 Score: 307 bits (786), Expect = 3.320e-100 Identity = 158/270 (58.52%), Postives = 210/270 (77.78%), Query Frame = 1
Query: 46 ALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSE---GESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAER 846
AL T+LAV AA+FGAGI + G E +++ AGY+VE SLSVDNLFVFLLLFK+F+VP +N+VL++GIFGA+++R I I +G A+ +F+P+ L FAA+L +SSYK+L+E GE +E EDL +N I+ + S L +D YDG KFFT V+GV+ ATPLLL LVCVELSD++FA+DS+PAVF VTKDPFIVYTSNI+AI+ LRSLYT+LS AV +L YL+PAV +VLGF+G+K+G E+ GYEI T +SL ++ LLG G+ S+ +
Sbjct: 101 ALKQTSLAVVSAAMFGAGIFWFKGVESGLEFAAGYLVEQSLSVDNLFVFLLLFKYFQVPKCYENQVLNWGIFGALLLRGIMIGIGVEAVELFQPIFLVFAAVLAYSSYKILAEWVTGEGEEEEDLEDNAIIKLASKVLTVSDEYDGGKFFTVVDGVKVATPLLLCLVCVELSDIVFAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLSKAVSELDYLQPAVGIVLGFIGSKLGLEYYGYEISTGVSLGVVAALLGGGVGLSVLTK 370
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A4S7T9_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S7T9_OSTLU) HSP 1 Score: 294 bits (752), Expect = 2.420e-96 Identity = 156/271 (57.56%), Postives = 208/271 (76.75%), Query Frame = 1
Query: 46 ALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
A+++ L V+ A FGAGI + G +KA +Y AGY++E SLSVDNLFVF+LLF++FKVP E Q RVL+YGI GA+VMRA+ + G + F+P+LL FA IL FSSYKLL+EGE +E ED+ +N IV N L+ ++ YDG+ FFT NGV+ ATPLLLVL VE+SDV+FA+DSIPAVF VTKDPFIVYTSN++AI++LR LYT++S AV +L+YL+ AVA+VLGF+GAK+ E+ G E+PT+ SL ++V +LG G+ ASL ++K
Sbjct: 12 AIVAACLGVSCA--FGAGIGAVEGADKASEYFAGYLLEQSLSVDNLFVFVLLFEYFKVPPERQTRVLNYGIVGALVMRAVMVGAGVELIENFQPILLVFAGILIFSSYKLLAEGEEEE-EDMGDNAIVKFVGNFLEVSEDYDGDNFFTVQNGVKMATPLLLVLAVVEISDVVFAVDSIPAVFGVTKDPFIVYTSNLFAILSLRQLYTLISKAVGELKYLQTAVALVLGFIGAKMIVEYAGVEVPTEASLAVVVTMLGGGVGASLMLPSEDK 279
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A096PAW2_OSTTA (Integral membrane protein TerC,riboswitch-linked n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PAW2_OSTTA) HSP 1 Score: 291 bits (746), Expect = 1.840e-95 Identity = 150/257 (58.37%), Postives = 198/257 (77.04%), Query Frame = 1
Query: 88 FGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
FGA I G++ A +Y AGY++E SLSVDNLFVF+LLF++F+VP Q VL+YGIFGA++MRA+ I G + F+P+LL FA IL FSSYKL+S+G+SDE ED+ +N +V S D +D YDG+ FFT NGV+ ATPLLLVL VE+SDV+FA+DSIPAVF VTKDPFIVYTSN++AI++LR LYT++S+AV +L+YL+ AVA+VLGF+G+K+ E+ G EIPT++SL ++V LL G+AASL D K
Sbjct: 22 FGAAIGATSGSDAASEYFAGYLLEQSLSVDNLFVFVLLFEYFQVPPARQKVVLNYGIFGALIMRAVMIVAGVELIENFKPILLVFAGILIFSSYKLISQGDSDEEEDMADNAVVKFCSKLFDVSDDYDGDNFFTVQNGVKMATPLLLVLAVVEISDVVFAVDSIPAVFGVTKDPFIVYTSNLFAILSLRQLYTLISTAVGELKYLQTAVALVLGFIGSKMVVEYTGVEIPTELSLAVVVTLLSGGVAASLYLPDDSK 278
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: C1EER2_MICCC (Uncharacterized protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EER2_MICCC) HSP 1 Score: 288 bits (737), Expect = 2.340e-94 Identity = 151/258 (58.53%), Postives = 199/258 (77.13%), Query Frame = 1
Query: 76 GAAV-FGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAER 846
GAAV FG G+ ++G EKA ++ AGY++E SLSVDNLFVF+L+F +FKVP SQ RVL+YGI+GA+VMRA I G A++ F+P+LL FA +L FSSYKL++EGE +E ED+ EN IV SN L + YDG FFT+ NG + ATPLLL L +ELSDV+FA+DSIPAVF +T+DPFIVY+SNI+AI+ LRSL+ +++ V +L+YL+ AVA VLGFVG K+ EF G EIPT+ SL ++VG+LG G+A SLA++
Sbjct: 6 GAAVAFGLGVGAVMGAEKAEEFFAGYLLEQSLSVDNLFVFVLVFDYFKVPLASQPRVLNYGIWGAMVMRAAMIIAGYEAVTNFKPILLVFAGVLIFSSYKLIAEGEEEEEEDMSENAIVKFCSNLLPVSKDYDGENFFTTENGAKIATPLLLCLCVIELSDVVFAVDSIPAVFGITEDPFIVYSSNIFAIMGLRSLFAFVATMVAELEYLQTAVAAVLGFVGCKMVVEFGGVEIPTEASLAVVVGMLGAGVALSLAKK 263
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A1Y1IHD0_KLENI (Integral membrane protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHD0_KLENI) HSP 1 Score: 294 bits (752), Expect = 3.750e-94 Identity = 159/271 (58.67%), Postives = 207/271 (76.38%), Query Frame = 1
Query: 46 ALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
ALI+ A V AAVFGAG+ + G KA +Y AGYI+E SLSVDNLFVF+L+FK+F+VP + QNRVLS+GI GAVV RA+ I LG + F V L FA IL FSS+KLL +G+ DE EDL +N+IV S +++TD YDGN FFT V+GV+RATPLLL L VELSD+ FA+DSIPAVF VT DPFIV++SNI+AII LRSLYT+++ + DL++L+P++A+VLGFVGAK+ EF G ++PT+ SL +++G+LG GI SL + +EK
Sbjct: 173 ALITVAFWVAAAAVFGAGVGIVQGPGKASEYFAGYILEQSLSVDNLFVFVLIFKYFQVPLDYQNRVLSWGIAGAVVFRALLIGLGAATVQEFTAVNLVFAGILLFSSFKLL-QGDDDEDEDLSDNYIVKTCSKLINSTDYYDGNNFFTVVDGVKRATPLLLTLAVVELSDIAFAVDSIPAVFGVTHDPFIVFSSNIFAIICLRSLYTLVAGVMKDLRFLQPSIAIVLGFVGAKLIAEFAGLQVPTESSLAVVIGVLGSGIFLSL-KFPEEK 441
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A7S0HY79_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HY79_9CRYP) HSP 1 Score: 288 bits (738), Expect = 5.290e-93 Identity = 156/271 (57.56%), Postives = 202/271 (74.54%), Query Frame = 1
Query: 37 YGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVE-DLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAER 846
Y AL TA+AV+ A+ FG GI LG +KA++Y GY++E SLSVDNLFVFLLLF++FKVP Q +VLSYGI+GAVVMRA FI+ G A+ FR VLL FA +L +SS+K+LS GE +E D+ EN IV S + AT YDG+KFFT V+GV++ATPL LVL+CVE SDV+FA+DSIPAVF VT+DP IV TSNI+AI++LR+LY +L+ DL+YL AV VLGFVG K+ GE+ G+E+P SL +++GLL G+ AS+ E+
Sbjct: 47 YKTALRDTAIAVSLASAFGVGIWNFLGADKALEYFTGYLLEESLSVDNLFVFLLLFEYFKVPQYQQKKVLSYGIWGAVVMRAAFISAGLVAIQQFRGVLLVFAGLLMYSSFKMLSGGEEEEENADVSENSIVKFASKLVQATPEYDGDKFFTIVDGVKKATPLFLVLLCVEFSDVMFAVDSIPAVFGVTEDPLIVLTSNIFAIMSLRALYQVLAQLAKDLKYLETAVGAVLGFVGLKLVGEYFGFELPEQASLSVVIGLLTAGVGASIYEK 317
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A7S0MZU7_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MZU7_9CRYP) HSP 1 Score: 290 bits (741), Expect = 9.700e-93 Identity = 152/274 (55.47%), Postives = 202/274 (73.72%), Query Frame = 1
Query: 37 YGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
Y +A+ +T LAV+ A FG G+ +LG KA+++ +GY+VE SLSVDNLFVF+LLF++FKV Q RVL +GI GA V+R FIA G A+ F+ VLL FA L FSS+K+L+ GE +E EDL +N +V + S + +T YDG+KFFT V+GV+RATPLLLVLVCVELSDV+FA+DSIPAVF +T+DPFIV TSN++AI+ LR+L+ I+S + +L+YL PAV +VLGFVG K+ G F G E+P SL +I+ LLG G+ S R DE+
Sbjct: 103 YQSAIRNTGLAVSAAVAFGIGVGAVLGVPKAIEFFSGYVVEESLSVDNLFVFILLFEYFKVSQALQQRVLKWGIIGAAVLRGAFIAAGLVAIESFKGVLLVFAGFLIFSSFKILTGGEEEEEEDLSQNSVVKLASRLVQSTTEYDGDKFFTVVDGVRRATPLLLVLVCVELSDVMFAVDSIPAVFGITEDPFIVLTSNLFAILGLRALFQIISKVMKNLEYLEPAVGLVLGFVGLKMVGGFFGVEVPPAESLAVILSLLGGGVGLSYLNRHDEE 376 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6808.14437.1 >prot_H-elongata_contig6808.14437.1 ID=prot_H-elongata_contig6808.14437.1|Name=mRNA_H-elongata_contig6808.14437.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp MKVESAPDPDRYGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIback to top mRNA from alignment at H-elongata_contig6808:8004..9987- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6808.14437.1 ID=mRNA_H-elongata_contig6808.14437.1|Name=mRNA_H-elongata_contig6808.14437.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1984bp|location=Sequence derived from alignment at H-elongata_contig6808:8004..9987- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6808:8004..9987- >mRNA_H-elongata_contig6808.14437.1 ID=mRNA_H-elongata_contig6808.14437.1|Name=mRNA_H-elongata_contig6808.14437.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig6808:8004..9987- (Himanthalia elongata Himel1 dioecious)back to top |