mRNA_H-elongata_contig68063.14433.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68063.14433.1
Unique NamemRNA_H-elongata_contig68063.14433.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68063.14433.1 vs. uniprot
Match: D8LBB1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBB1_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 3.950e-45
Identity = 113/226 (50.00%), Postives = 136/226 (60.18%), Query Frame = 1 
Query:    1 VEQNAVEVRGAAATEFVSRWLRRNLPIALPVLRAFVLVTGDAEQEQ---GCRQPGGSPPV---DGWVVVDDVADPSAVAVVSRSAEQTMHRITLFSLNANAGAALAAAVVQPGAAGLVARGTLEASAPPERCGDREKGSGASSSSSRGLGSMISGDGGRNSYRAPR-LIFESLDSRILDAALISTMERLGLGVKSRSRSGFWRLPPGVALTAPDASALNVSASYRP 657
            VE    E+ G AATEFVSRWLR NLPI LP L A  L+ G   Q+    G R   G        G  + D VA+PS+VAVVS S EQ MHR+ LFSL+AN+GAALAAAVVQPGA GL+      A+      G+     G +S+ +RG    +SG        + R ++FESLDSRIL+ AL+STM RLGLG+K RSRSG W+L PG  L A D S    SA  RP
Sbjct:  113 VESPVQEITGVAATEFVSRWLRSNLPITLPALNALKLIEGGCAQQHQRIGSRSGDGQEQRRVRGGRALADSVAEPSSVAVVSCSPEQGMHRVNLFSLSANSGAALAAAVVQPGAVGLLVPPVGAAA-----LGEETVARGYNSNDTRGSSGEVSGRRSTGPGCSDRGVVFESLDSRILEDALVSTMRRLGLGLKKRSRSGMWKLRPGAVLPAGDTSI--TSAEVRP 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68063.14433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBB1_ECTSI3.950e-4550.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68063contigH-elongata_contig68063:1958..3126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcyl-CoA N-acyltransferase
Ec32 orthologEc-27_004570.1
Exons3
Model size657
Cds size657
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68063.14433.1prot_H-elongata_contig68063.14433.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68063 1958..3126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.8538442-CDS-H-elongata_contig68063:1957..22051622931073.8538442-CDS-H-elongata_contig68063:1957..2205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68063 1958..2205 +
1691679686.9223626-CDS-H-elongata_contig68063:1957..22051691679686.9223626-CDS-H-elongata_contig68063:1957..2205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68063 1958..2205 +
1622931073.8689215-CDS-H-elongata_contig68063:2483..28071622931073.8689215-CDS-H-elongata_contig68063:2483..2807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68063 2484..2807 +
1691679686.9327695-CDS-H-elongata_contig68063:2483..28071691679686.9327695-CDS-H-elongata_contig68063:2483..2807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68063 2484..2807 +
1622931073.882618-CDS-H-elongata_contig68063:3041..31261622931073.882618-CDS-H-elongata_contig68063:3041..3126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68063 3042..3126 +
1691679686.9433732-CDS-H-elongata_contig68063:3041..31261691679686.9433732-CDS-H-elongata_contig68063:3041..3126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68063 3042..3126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68063.14433.1

>prot_H-elongata_contig68063.14433.1 ID=prot_H-elongata_contig68063.14433.1|Name=mRNA_H-elongata_contig68063.14433.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
VEQNAVEVRGAAATEFVSRWLRRNLPIALPVLRAFVLVTGDAEQEQGCRQ
PGGSPPVDGWVVVDDVADPSAVAVVSRSAEQTMHRITLFSLNANAGAALA
AAVVQPGAAGLVARGTLEASAPPERCGDREKGSGASSSSSRGLGSMISGD
GGRNSYRAPRLIFESLDSRILDAALISTMERLGLGVKSRSRSGFWRLPPG
VALTAPDASALNVSASYRP
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mRNA from alignment at H-elongata_contig68063:1958..3126+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68063.14433.1 ID=mRNA_H-elongata_contig68063.14433.1|Name=mRNA_H-elongata_contig68063.14433.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1169bp|location=Sequence derived from alignment at H-elongata_contig68063:1958..3126+ (Himanthalia elongata Himel1 dioecious)
GTGGAGCAGAATGCTGTTGAGGTCAGGGGCGCGGCTGCGACCGAATTCGT
CTCGCGTTGGCTGCGCCGGAATCTCCCTATCGCCCTCCCCGTGCTACGAG
CCTTCGTCCTCGTGACCGGTGACGCGGAGCAGGAGCAAGGGTGCAGACAG
CCCGGGGGATCACCTCCGGTTGACGGATGGGTGGTAGTTGACGATGTAGC
CGACCCGTCCGCCGTGGCCGTGGTGTCTCGATCGGCGGAGCAGACTATGT
GAGAGGTCTCAGAGGGGTCATAGGGAACAAGACCGGGGTCAGGCGCGTTC
GGAGTGATTTGAGACCCGCCGTAAGTTTCAAGTACCGTTGTAGACTACAG
CATTACTTTTACAGCATTACTCCGTCCAAGCGTTCAGGAATAGCTCTAGT
ACCGCGGGGCTTTTGTCCCGAGAAAATATAGGCCTCGCCACCCCCCCACC
CCCCCTGCATCTCGCCTCCCCTCATCTGTATCATGAAACCCATTTCAATT
CGTGGCCGCCCTCGCTCTCTCGATAGGCATCGTATTACTTTGTTTAGTCT
AAACGCGAATGCCGGGGCTGCCCTGGCCGCCGCTGTCGTTCAACCGGGGG
CTGCCGGTTTGGTCGCCCGGGGAACTCTCGAGGCATCGGCTCCACCTGAG
CGATGCGGCGATCGTGAGAAGGGGTCGGGAGCCAGCAGCAGCAGCAGCCG
GGGTCTGGGGTCGATGATTAGCGGCGATGGCGGACGAAATAGTTATCGAG
CGCCGCGGTTAATATTCGAGTCCTTGGATTCGAGAATATTGGATGCAGCT
CTGATATCAACCATGGAGAGGCTTGGGCTCGGCGTCAAAAGCCGATCACG
GTGAGGTTTATCGGGAGCATTTCCTTTTTTGCTTTTGTACGTACGCGTTG
TTGCCTTAGGACACCTTTGACCTTTGACCTTAACGAAATCCACATGTACA
GTCTAGAAGATACCTTCCGTGTCTTCCGGCCCCAACGCAGCTAGATCGCT
CGCCACGCCTTTCCACCGAGCCATCACTGCCCCGTGCAGCGATTGACGGA
CGGATCCGCTGCCGTCTTTTTTTCGTCGTATCAGGAGTGGCTTTTGGAGG
CTCCCTCCCGGCGTCGCTCTTACCGCCCCTGATGCGTCCGCTTTGAACGT
GAGCGCGAGCTATCGCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig68063:1958..3126+

>mRNA_H-elongata_contig68063.14433.1 ID=mRNA_H-elongata_contig68063.14433.1|Name=mRNA_H-elongata_contig68063.14433.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig68063:1958..3126+ (Himanthalia elongata Himel1 dioecious)
GTGGAGCAGAATGCTGTTGAGGTCAGGGGCGCGGCTGCGACCGAATTCGT
CTCGCGTTGGCTGCGCCGGAATCTCCCTATCGCCCTCCCCGTGCTACGAG
CCTTCGTCCTCGTGACCGGTGACGCGGAGCAGGAGCAAGGGTGCAGACAG
CCCGGGGGATCACCTCCGGTTGACGGATGGGTGGTAGTTGACGATGTAGC
CGACCCGTCCGCCGTGGCCGTGGTGTCTCGATCGGCGGAGCAGACTATGT
GGAGCAGAATGCTGTTGAGGTCAGGGGCGCGGCTGCGACCGAATTCGTCT
CGCGTTGGCTGCGCCGGAATCTCCCTATCGCCCTCCCCGTGCTACGAGCC
TTCGTCCTCGTGACCGGTGACGCGGAGCAGGAGCAAGGGTGCAGACAGCC
CGGGGGATCACCTCCGGTTGACGGATGGGTGGTAGTTGACGATGTAGCCG
ACCCGTCCGCCGTGGCCGTGGTGTCTCGATCGGCGGAGCAGACTATGCAT
CGTATTACTTTGTTTAGTCTAAACGCGAATGCCGGGGCTGCCCTGGCCGC
CGCTGTCGTTCAACCGGGGGCTGCCGGTTTGGTCGCCCGGGGAACTCTCG
AGGCATCGGCTCCACCTGAGCGATGCGGCGATCGTGAGAAGGGGTCGGGA
GCCAGCAGCAGCAGCAGCCGGGGTCTGGGGTCGATGATTAGCGGCGATGG
CGGACGAAATAGTTATCGAGCGCCGCGGTTAATATTCGAGTCCTTGGATT
CGAGAATATTGGATGCAGCTCTGATATCAACCATGGAGAGGCTTGGGCTC
GGCGTCAAAAGCCGATCACGGCATCGTATTACTTTGTTTAGTCTAAACGC
GAATGCCGGGGCTGCCCTGGCCGCCGCTGTCGTTCAACCGGGGGCTGCCG
GTTTGGTCGCCCGGGGAACTCTCGAGGCATCGGCTCCACCTGAGCGATGC
GGCGATCGTGAGAAGGGGTCGGGAGCCAGCAGCAGCAGCAGCCGGGGTCT
GGGGTCGATGATTAGCGGCGATGGCGGACGAAATAGTTATCGAGCGCCGC
GGTTAATATTCGAGTCCTTGGATTCGAGAATATTGGATGCAGCTCTGATA
TCAACCATGGAGAGGCTTGGGCTCGGCGTCAAAAGCCGATCACGGAGTGG
CTTTTGGAGGCTCCCTCCCGGCGTCGCTCTTACCGCCCCTGATGCGTCCG
CTTTGAACGTGAGCGCGAGCTATCGCCCGGAGTGGCTTTTGGAGGCTCCC
TCCCGGCGTCGCTCTTACCGCCCCTGATGCGTCCGCTTTGAACGTGAGCG
CGAGCTATCGCCCG
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