mRNA_H-elongata_contig6806.14431.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6806.14431.1 vs. uniprot
Match: A0A6H5JG49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG49_9PHAE) HSP 1 Score: 658 bits (1698), Expect = 3.930e-205 Identity = 638/1633 (39.07%), Postives = 790/1633 (48.38%), Query Frame = 1
Query: 4 AMRTPNAPGIRWQKESGSLRTGESQDNLRALLQNEERKRAGLYDALNRRIEDLQDSIKRIRSSLVLGVRAVRVSGFGEETQELRLLRRRGPGTSSGSELRLRPPCGYGLEECTCGEASSAPEPVREGSLRLAVNAEKEAAXXXXXXXXXXXSATAHVGTGAARSQENGASRGGQTSSRLGGEARESSKKRRVIKGDDGEESNKAGRRQVRGSNVGASSASSSLDDIKRQMGKNPRELERRKEVLEEE---------VRAAEGGWEVSR-RDIDNVSAEGLRSKANTALKKSIFGTVE---------------------HTDEKVGEDRGDHHRGLAGL-PHERAEWLEERGRYQEALTWHRQDLAAAQRLALDGEVEDERDLTLDVARALRNTGCCLGKLGMAGFEEANEHLMEACGYVGPGGSFPSPVEEQDVVLELGNLWYHRYLLLAEKACSSAGGGIRFLADEALESAIRRYRESRELCVDLVADTSEECASSRDGDVTVGSDTCTVATGNEMSSSRSARKHLLRAEYNVGMGLVEQGKYVDAIPHLAAVGDGFRNL---ARSAPVTNPLEEDGAAGNDWERRDSEGKKIVLASAFETDPARST--SWEVALER-DGMADSGGLYASSLSLFGECLTPS--PS----------RFRAAMIVLEASVEAFIAIGDPASAIEPLEKLVDLVHREDRGKRVRGAHYFATADSLFESISLALKKERGNIIGHSIGGPSGKDARAASSKATHDVDDALSQVDHMRRRVEHL--RTRNIVEGGCC--------------------------RAEVREEQELGRGSNDVRQQQQQGQQYKERLAGHDIDTHPSADPESFQRRVVGPPPSTSFRRRLRQM-----------KVLPTASAAAGRGRRNARGSASARKSSNIS---GLSSGYSANGVRTAVVSPADAAQLGEVSNQSPIPGWSNANLPSGRNKRQGSFAELREAVVATV-VVAQAAATKAALEGSAVADECEELAK--ERCSFLNLKPNAQASARLL----------LAERPTDVPGNIESTARISKSCGKAKNSEGAPVLDLRACRLSDRDVQVIIHALARGSGATNRDSPALAETLMVDGVATGDPPSSPGRFSALLLGDNPGI---ALRSVEALWGVSVD-DGSRGSKHSTGLLCYLQRLDLSRCGLIASDLAGFSTGDGDRSPAGTVSA--VSLRALVLRDNPLTRV---GAISGNTD-----LEGAVRGAAGLRDLITRAPALKTLDVSGCSRLPEGPTSRLYSPKIAELLASAIADGLRARANTGLV----GGGATAP----DGSND-------RAQVATLRLGNNRFDRSSWVQVVRVLSFRPPRELDLSFASEWLHFSSAT-----TAEEAASSIE-----NNACESS---------RRSLLSELLAATILPADAPGVETLDLSGSTGFLPLVDLTRSCEEREMARGGDGGGAAPSPL----SSSTEAFFVLVRDALMSPLCRTARLSLSGARGSLPPRARNSPPAGKQPRQ-----------VLGPEEVKVLCEAASACASLRCLDLGGSDLSGSFGATAAAAAVAVLTRNNRDAGDATGDGATGPGLNRLSLRACRLGIAGLASVVSAL 4398
A RTPN GI WQK RTGESQD+LR LL+ K G +DALN RIEDLQ+SIKRIR LV VRAVRV+ FGEETQELRL R G G ELRL PPCGY L +C CG +SS V GSL A+ EAA XXXXXXXXXX G T+S G+ GR GA+S LD+ Q+GKN EL RR+ L EE R+++GG VSR R AE + ++G V+ D L G+ PHERAE E R + EAL WHRQDL AA+ + G+ E+ER+ LD+ARALRNTG CLGKLG +G+ E+ + L EA VG GG +PSP EEQD+VLELGNL Y RY+L E+ G+RFLADEALE+A+ YRESRELCVDLVAD+ E A S +G V ++ T S LLRAEYNVGM L EQ K DA HL+A FR L A + + G G + E + +A T A ST +W+ A + +G++ GG+YASSL L GECL S PS R R A L+AS EAF+ IGD + A+ PL +LV+++ R G G H+ + S+ L ++ E + + P+ DA D D+ Q+D +R V L R V G + R G + QQQQQG AG D PS+ P F+R VGP P+++F +R VL S + +R+ G + + GV V+ A +G + GW+ + GSFA LR AV A A +AA +A G V L+K ++C L KPN A RL LA LDL ACRL+DR+++V++H L+ G G D+ A T G G P + P R AL+L NPGI ALR + GV+ DG+ GS S+ L RL+LS C L A+DL GFS+ P+ +A V L ALVLRDNPLTR+ G + G D +E A +G A L+DLI RAP+L LDVSGCS++P+GP RLYSP++++LLASA+ GL AR G + G G A DG ND RAQV+TLR+GNNRF SWV V+ VLS PPRELDLSFAS S+AT TA AA ++ NN + L ELLAAT+LPADAPGVETL+L+GSTG L L D R ++R GG G PL S EAF +L+RDALMSPLC T L LSG RG V GP + K LCEAASACASLRCLDL G DLSG GA AAAAAV+ L N+ + D G G G L RLSLRAC L AGLA+VV AL
Sbjct: 24 AERTPNVGGIHWQK--AGPRTGESQDHLRRLLRKAGSKFEGEFDALNLRIEDLQESIKRIREYLVRSVRAVRVNKFGEETQELRLRLRGG-----GGELRLPPPCGYSLADCVCGASSSPXXXVHAGSLGNAI----EAARXXXXXXXXXXXXXXXXXXXXXXXXXGFDGAAGPTTS---GDXXXXXXXXXXXXXXXXXAGQLGGRAPA----AGANSDDEPLDE---QVGKNALELARRRAALGEEGTGASGVGGKRSSDGGGVVSRGRAASRQPAEDPERAHDDDGGDGVWGGVDGCVGXXXXXXXXXXWANXXXXXXXXXXXXXXXDWQDALLGMQPHERAEAFEGREMFAEALKWHRQDLEAARACVVSGDEEEERESVLDLARALRNTGRCLGKLGNSGYAESKKCLTEARELVGHGGLYPSPPEEQDLVLELGNLMYSRYVLCDEQ-------GVRFLADEALEAALEYYRESRELCVDLVADSVEGYAKSSNGGVF---ESATAXXXXXXXXSGC----LLRAEYNVGMSLFEQEKRGDAEAHLSAAVKIFRGLFAFGGGAQAGSTFQPAGGGG------EGEXAAASVGAAAGTPAAASTLDAWKAAARKQEGLSGLGGVYASSLYLLGECLASSCVPSSALESDSRQGRRRNAAETLQASAEAFLYIGDHSGALPPLLRLVEVLRRRLAGGA--GRHHGEEDEVHCRSLILGVE-ELCDRASSGLRLPTEVDANG------DDPDEDRLQLDQIREGVAGLVRAARGGVSGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXEPDGRGRAHASEGQTNSLQQQQQGH-----AAGEGADAPPSS-PAPFRR--VGPVPTSAFAQRXXXXXXXXXXXXXXRNVLGNFSRDSSXXXXXXXXXXXSRQKQKFGAAVGATCAQAPRGVGEGVI----ATGVGGFGGSAGGEGWAAGD-------GGGSFAGLRAAVAARDGTAAVSAAAEATARGDEVGGRDTALSKYLDKCDHLQEKPNPLACTRLAKVDHRGLDTALAAXXXXXXXXXXXXXXXXXXXXXXXPPAPHQTLDLGACRLTDRELRVLLHVLSGGRGGVGPDAAVAAAT---SGGGQGAP-TPPPRLGALVLNGNPGIGAGALRELCGGRGVNASRDGNGGSLFSS-----LLRLELSACHLTAADLEGFSSSGARPPPSEQTAAATVCLEALVLRDNPLTRLRERGPVDGVNDDDDAWIEPARKGTAALQDLIARAPSLDVLDVSGCSQIPDGPAGRLYSPQVSDLLASALRAGLEARVVAGKLAAANGAGRVADGSSGDGGNDERSESDGRAQVSTLRMGNNRFSWESWVDVLEVLSSAPPRELDLSFASALPGRSAATGDGVGTATAAAVALTPVGGGNNDSPGAVTPPLRPAPPAQTLGELLAATVLPADAPGVETLNLTGSTGLLLLDDRRR--QQRRGVEGGVGIEDPSEPLACLSSLGMEAFVLLLRDALMSPLCETTHLLLSGVRGPXXXXXXXXXXXXXXXXXXXXXXXXXXAAVFGPRDAKSLCEAASACASLRCLDLAGCDLSGPVGAAAAAAAVSCLISNDDE--DEVGLGMAGGVLRRLSLRACGLEAAGLAAVVRAL 1574
BLAST of mRNA_H-elongata_contig6806.14431.1 vs. uniprot
Match: D8LDQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ0_ECTSI) HSP 1 Score: 607 bits (1564), Expect = 1.560e-186 Identity = 609/1618 (37.64%), Postives = 743/1618 (45.92%), Query Frame = 1
Query: 4 AMRTPNAPGIRWQKESGSLRTGESQDNLRALLQNEERKRAGLYDALNRRIEDLQDSIKRIRSSLVLGVRAVRVSGFGEETQELRLLRRRGPGTSSGSELRLRPPCGYGLEECTCGEASSAPEPVREGSLRLAVNAEKEAAXXXXXXXXXXXSATAHVGTGAARSQENGASRGGQTSSRLGGEARESSKKRRVIKGDDGEESNKAGRRQVRGSNVGASSASSSLDDIKRQMGKNPRELERRKEVLEEEV----------RAAEGGWEVSR-RDIDNVSAEGLRSKANTALKKSIFGTVEHTDEKVGEDRG------------------------DHHRGLAGL-PHERAEWLEERGRYQEALTWHRQDLAAAQRLALDGEVEDERDLTLDVARALRNTGCCLGKLGMAGFEEANEHLMEACGYVGPGGSFPSPVEEQDVVLELGNLWYHRYLLLAEKACSSAGGGIRFLADEALESAIRRYRESRELCVDLVADTSEE-CASSRDGDVTVGSDTCTVATGNEMSSSRSARKHLLRAEYNVGMGLVEQGKYVDAIPHLAAVGDGFRNL------ARSAPVTNPLEEDGAAGNDWERRDSEGKKIVLASAFETDPARSTSWEVALER-DGMADSGGLYASSLSLFGECLTPS--PS----------RFRAAMIVLEASVEAFIAIGDPASAIEPLEKLVDLVHREDRGKRVRGAHYFATADSLFESISLALKKERGNIIGHSIGGPSGKDARAASSKATHDVDDALSQVDHMRRRVEHLRTRNIVEGGCCRAEVREEQELGRGSNDVRQQQQQGQQYKERLAGHDIDTHPSADPESFQRRVVGPPPSTSFRRR-----------LRQMKVLPTASAAAGRGRRNARGSA-----SARKSSNIS-GLSSGYSANGVRTAVVSPADAAQLGEVSNQSPIPGWSNANLPSGRNKRQGSFAELREAVVATVVVAQAAATKAALEGSAVADEC----EELAK--ERCSFLNLKPNAQASARLLLAER----PTDVPGNIESTARISKSCG----KAKNSEGAP--VLDLRACRLSDRDVQVIIHALARGSGATNRDSPALAETLMVDGVATGDPPSSPGRFSALLLGDNPGIALRSVEALWG---VSVDDGSRGSKHSTG--LLCYLQRLDLSRCGLIASDLAGFST-GDGDRSPAGTVSA-VSLRALVLRDNPLTRV---GAISGNTD-----LEGAVRGAAGLRDLITRAPALKTLDVSGCSRLPEGPTSRLYSPKIAELLASAIADGLRARANTGLV----GGGATAP----DGSND-------RAQVATLRLGNNRFDRSSWVQVVRVLSFRPPRELDLSFASEWLHFSSATTAEEAASSIENNACE---------------------SSRRSLLSELLAATILPADAPGVETLDLSGSTGFLPLVDLTRSCEEREMARGGDGGGAAP--SPLSSSTEAFFVLVRDALMSPLCRTARLSLSGARGSLPPRARNSPPAGKQPRQ-----------VLGPEEVKVLCEAASACASLRCLDLGGSDLSGSFGATAAAAAVAVLTRNNRDAGDATGDGATGPGLNRLSLRACRLGIAGLASVVSAL 4398
A RTPN GI WQK LRTGESQD+LR LL K G +DALN RIEDLQ+SIKRIR LV VRA RV+ FGEETQELRL R G G ELRL PPCGY L +C CG +SS P PV GSL A+ A + XXXXXXXXXXX A+S +D+IK Q GKN L RR+ LEEE R+++G VSR R AE D L G+ PHERAE E R + EAL WHRQDL AA+ + G+ E+ER LD+ARALRNTG CLGKLG +G+ E+ + L EA VG GG +PSP EEQD+VLELGNL Y RY+L E+ G+RFLADEALE+A+ YRESRELCVD+VAD+ + A + +G V+ +A LLRAEYNVGM L EQ K DA HL+A FR L A++ +P A G T A W+ A + +G++ GG+YASSL L GECL S PS R + A L AS EAF+ GD + A+ PL LV+++ R G G H+ + ER G P G+ A T+ QQQQQG AG PS+ P F+R VGP P+++F +R KVL G R+A SA S+R++S + G + + GV VV+ G + GW GSFA LR A A ++ A AA EG A DE L+K E+C L KPN A ARL AE + +C S AP LDL ACRL+DR+++V++H L+RG G D+ A P SP R AL+L NPGI ++ L G S++ +G L L RL+LS C L A+DL GFS+ G G S T +A V LRALVLRDNPLTR+ G + G + +E A +G L+ LI RAP+L+ LDVSGCS++P+GP RLYSP++++LLASA++ GL AR G + G G A DG ND RAQV+TLR+GNNRF R SW V+ VLS PPRELDLSFAS L SA TA+ ++ + L ELLAAT+LPADAPGVETL+L+GSTG L AP P SS EAF +L+RD LMSPLC T L LSG RG V GP + K LCEAASACASLRCLDL G DLSG GA AAAAAV+ L N+ + D G G G L RLSLRAC LG AGLA VV AL
Sbjct: 24 AERTPNVGGIHWQK--AGLRTGESQDHLRRLLGKAGSKFEGDFDALNLRIEDLQESIKRIREYLVRSVRAFRVNKFGEETQELRLRLRGG-----GGELRLPPPCGYSLADCVCGASSSPPPPVHAGSLGDAIEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASANSDDVPVDEIKSQTGKNALGLARRRAALEEETKTGARGVGGKRSSDGXXVVSRGRAASREPAEDPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWANXXXXXXXXXXXXXXXXDWQDALLGMQPHERAEAFEGREMFAEALRWHRQDLEAARACVVSGDEEEERGSVLDLARALRNTGRCLGKLGNSGYAESKKCLTEARELVGHGGPYPSPPEEQDLVLELGNLMYSRYVLCDEQ-------GVRFLADEALEAALEYYRESRELCVDVVADSVDAGFAKTSNGGVSES-----AXXXXXXXXXXTASGCLLRAEYNVGMSLFEQEKRRDAEGHLSAAVKIFRRLFAAGGGAQAGSTFHPA----AGGXXXXXXXXXXXXXXXXXXXSTLDA----WKAAARKQEGLSGLGGVYASSLYLLGECLASSCVPSSALEDDSRQGREKIAAETLRASAEAFLYTGDHSRALPPLLMLVEVLRRRLAGGA--GRHH-------------GEEDERKG------GEPDGRGRAHAPEGRTNSP----------------------------------------------QQQQQGH-----AAGEVAGASPSS-PAPFRR--VGPVPTSAFAQRRXXXXXXXXXXXXXRKVLGKFP-----GDRSATSSAVTTVSSSRQTSGTAVGAAGAQAPRGVGEGVVATGG----GGFGGSAGXXGWVXXXXX-------GSFAGLRAAAAAQD---ESTAVSAAAEGRARGDEVGGRDTALSKYLEKCHHLQEKPNPLACARLAQAEHRGLDTAPAAXXXXXXXXVDPACDGDNTHRHRSPPAPHQALDLGACRLTDRELRVLLHVLSRGRGGVGPDA---AVXXXXXXXXXXXPMPSP-RLGALVLNGNPGIGAGALRELCGGXXXXXXXXMNASRNGSGGSLFSSLLRLELSACRLTAADLEGFSSNGAGPPSFDQTAAATVCLRALVLRDNPLTRLRERGPVDGGNEDEDAWIEPARKGTVALQHLIARAPSLEVLDVSGCSQIPDGPVRRLYSPQVSDLLASALSAGLEARVVAGKLAAATGAGRVADGSGGDGGNDERSESDGRAQVSTLRMGNNRFSRESWGDVLEVLSSNPPRELDLSFASV-LPGRSAATADGVVTTATXXXXXXXXXXXXXXXXXGAVTPPPRPAPPAQTLGELLAATVLPADAPGVETLNLTGSTGLLLXXXXXXXXXXXXXXXXXXXXXXAPLACPSSSGMEAFLLLLRDTLMSPLCETTHLLLSGVRGPXXXXXXXXXXXXXXXXXXXXXXXXXXAAVFGPRDAKSLCEAASACASLRCLDLAGCDLSGPVGAAAAAAAVSCLISNHDE--DEVGLGMAGGRLRRLSLRACALGAAGLAVVVRAL 1513 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6806.14431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6806.14431.1 >prot_H-elongata_contig6806.14431.1 ID=prot_H-elongata_contig6806.14431.1|Name=mRNA_H-elongata_contig6806.14431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1466bp MRTPNAPGIRWQKESGSLRTGESQDNLRALLQNEERKRAGLYDALNRRIEback to top mRNA from alignment at H-elongata_contig6806:1376..7903+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6806.14431.1 ID=mRNA_H-elongata_contig6806.14431.1|Name=mRNA_H-elongata_contig6806.14431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6528bp|location=Sequence derived from alignment at H-elongata_contig6806:1376..7903+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6806:1376..7903+ >mRNA_H-elongata_contig6806.14431.1 ID=mRNA_H-elongata_contig6806.14431.1|Name=mRNA_H-elongata_contig6806.14431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=8796bp|location=Sequence derived from alignment at H-elongata_contig6806:1376..7903+ (Himanthalia elongata Himel1 dioecious)back to top |