mRNA_H-elongata_contig68040.14429.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68040.14429.1
Unique NamemRNA_H-elongata_contig68040.14429.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: D7FY71_ECTSI (DNA topoisomerase VI subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY71_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 3.130e-63
Identity = 101/107 (94.39%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:    7 ISGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 327
            +SGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMT+HDIKTGKELLQEDFIKK++PWCRELELMIKSKKKAEIQSLSAFGFQYLT  YLPQKLQNGDWV
Sbjct:  533 MSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTEHDIKTGKELLQEDFIKKNEPWCRELELMIKSKKKAEIQSLSAFGFQYLTQNYLPQKLQNGDWV 639
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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A6H5KKC7_9PHAE (TP6A_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC7_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 8.710e-63
Identity = 101/107 (94.39%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    7 ISGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 327
            +SGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMT+HDIKTGKELLQE+FIKK++PWCRELELMIKSKKKAEIQSLSAFGFQYLTH YLPQKLQNGDWV
Sbjct:  703 MSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTEHDIKTGKELLQEEFIKKNEPWCRELELMIKSKKKAEIQSLSAFGFQYLTHNYLPQKLQNGDWV 809
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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A7S3A2U5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2U5_9RHOD)

HSP 1 Score: 177 bits (450), Expect = 7.240e-55
Identity = 84/107 (78.50%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:    7 ISGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 327
            +SGSK+MSYDSA+LTTPDIKWLGVRPSDLD+YNIPEQCRL MT++DIKTGKELL+EDFI+KS+ W  ELELM+K K+KAEIQ+LS FGFQYLT  YLP+KL  GDWV
Sbjct:   78 MSGSKSMSYDSANLTTPDIKWLGVRPSDLDKYNIPEQCRLPMTEYDIKTGKELLEEDFIRKSEIWVEELELMVKRKEKAEIQALSNFGFQYLTEEYLPRKLAEGDWV 184
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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A7S2DYP9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DYP9_9EUKA)

HSP 1 Score: 172 bits (435), Expect = 1.620e-53
Identity = 79/105 (75.24%), Postives = 94/105 (89.52%), Query Frame = 1 
Query:   13 GSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 327
            GSKNMSYD+ +LTTPDIKWLGVRPSDL++Y IP+QCRL+M++HDIKTGKELLQEDFIK +  W RELELM+K K KAEIQ+LS+FGFQYLT TYLP+KL+  DW+
Sbjct:   12 GSKNMSYDAINLTTPDIKWLGVRPSDLEKYQIPQQCRLEMSEHDIKTGKELLQEDFIKANPTWHRELELMVKMKVKAEIQALSSFGFQYLTQTYLPRKLKEADWI 116
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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A7S0AGI7_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7S0AGI7_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.770e-53
Identity = 77/107 (71.96%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:    7 ISGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 327
            +SGSKNMSYDSASLTTPDIKWLG+RPSDLD+Y++P+QCRLDMT+ DIKTGKEL+QE+FI+K+  W +EL++M+K+KKKAEIQ+LS+FGFQY+T  YLP+K+  GDW+
Sbjct:   94 MSGSKNMSYDSASLTTPDIKWLGLRPSDLDKYDLPDQCRLDMTESDIKTGKELMQEEFIQKNPKWMKELQIMVKTKKKAEIQALSSFGFQYVTEEYLPRKIAEGDWI 200
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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: R7QPA4_CHOCR (TP6A_N domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPA4_CHOCR)

HSP 1 Score: 179 bits (454), Expect = 5.940e-53
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1 
Query:    7 ISGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 327
            +SGSKNMSYDSA+LTTPDIKWLGVRPSDL++Y IPE+CRL MT+HDIKTGKELLQEDFIKK+  W +ELELM+K+K+KAEIQ+LS+FGFQYLT  YLP+KL  GDW+
Sbjct:  287 MSGSKNMSYDSANLTTPDIKWLGVRPSDLEKYGIPERCRLPMTEHDIKTGKELLQEDFIKKNPAWYKELELMVKNKEKAEIQALSSFGFQYLTEEYLPRKLAQGDWI 393
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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A6P5RIF4_PRUAV (DNA topoisomerase 6 subunit A-like n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5RIF4_PRUAV)

HSP 1 Score: 172 bits (436), Expect = 7.350e-53
Identity = 79/105 (75.24%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:   13 GSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 327
            GSKNMSYDSA+LTTPDIKWLG+RPSDLD+Y IPEQCRL MTD DIKTGKE+L+EDF+KK+  W  EL LM+K+K+KAEIQ+LS FGFQYL+ TYLP KLQ  DW+
Sbjct:   71 GSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLTMTDQDIKTGKEMLEEDFVKKNPKWVEELTLMVKTKQKAEIQALSTFGFQYLSETYLPLKLQEQDWI 175
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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: K0T2Z5_THAOC (Uncharacterized protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=K0T2Z5_THAOC)

HSP 1 Score: 169 bits (429), Expect = 2.660e-52
Identity = 77/107 (71.96%), Postives = 98/107 (91.59%), Query Frame = 1 
Query:    7 ISGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 327
            +SGSKNMSYDSASLTTPDIKWLG+RPSDL+RY++P+QCRL MT++DIKTGKELLQE FI K+  W +EL++M+K+K+KAEIQ+LS+FGFQY+T  YLP+KL+ GDW+
Sbjct:   32 MSGSKNMSYDSASLTTPDIKWLGLRPSDLNRYDLPDQCRLKMTENDIKTGKELLQEAFIAKNPLWMKELQIMVKTKEKAEIQALSSFGFQYITEEYLPRKLREGDWI 138
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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A2D4C7Q7_PYTIN (DNA topoisomerase VI subunit A n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7Q7_PYTIN)

HSP 1 Score: 170 bits (430), Expect = 3.110e-52
Identity = 78/107 (72.90%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:    7 ISGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 327
            +SGSKNMSYDSASLTTPDIKWLGVRPSDL +Y IPEQCRL+M D D+KTG++LL+E+FIKK+  W +ELELM+K+K+KAEIQ+LS+FGFQ+LT  YLP+KL+ GDW+
Sbjct:   48 MSGSKNMSYDSASLTTPDIKWLGVRPSDLKKYKIPEQCRLEMKDTDMKTGRDLLEEEFIKKNPAWYKELELMLKTKEKAEIQALSSFGFQFLTEEYLPRKLREGDWI 154
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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A7S0DR87_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DR87_9EUKA)

HSP 1 Score: 178 bits (452), Expect = 3.170e-52
Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 1 
Query:    7 ISGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 327
            +SGSKNMSYDSA LTTPDIKWLG+RPSDLD+Y IPEQCRL MT+HDIKTGK+LL E+FIKK+  W  ELELM+KSK+KAEIQ+LS FGFQYLT TYLPQKL  GDW+
Sbjct:  331 MSGSKNMSYDSAHLTTPDIKWLGIRPSDLDKYGIPEQCRLKMTEHDIKTGKQLLNEEFIKKNPEWHAELELMVKSKEKAEIQALSNFGFQYLTKTYLPQKLAQGDWI 437
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY71_ECTSI3.130e-6394.39DNA topoisomerase VI subunit A n=1 Tax=Ectocarpus ... [more]
A0A6H5KKC7_9PHAE8.710e-6394.39TP6A_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3A2U5_9RHOD7.240e-5578.50Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2DYP9_9EUKA1.620e-5375.24Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0AGI7_9STRA2.770e-5371.96Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
R7QPA4_CHOCR5.940e-5377.57TP6A_N domain-containing protein n=1 Tax=Chondrus ... [more]
A0A6P5RIF4_PRUAV7.350e-5375.24DNA topoisomerase 6 subunit A-like n=1 Tax=Prunus ... [more]
K0T2Z5_THAOC2.660e-5271.96Uncharacterized protein n=2 Tax=Bacillariophyta Ta... [more]
A0A2D4C7Q7_PYTIN3.110e-5272.90DNA topoisomerase VI subunit A n=1 Tax=Pythium ins... [more]
A0A7S0DR87_9EUKA3.170e-5278.50Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68040contigH-elongata_contig68040:2281..3019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.8
Seed ortholog evalue4.7e-51
Seed eggNOG ortholog2880.D7FY71
Preferred nameTOP6A
KEGG koko:K03166,ko:K10878
KEGG Pathwayko04113,map04113
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000706,GO:0000729,GO:0001708,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0008544,GO:0009888,GO:0009913,GO:0009957,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0016889,GO:0016894,GO:0017111,GO:0022402,GO:0022414,GO:0030154,GO:0030855,GO:0031974,GO:0031981,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0042138,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045165,GO:0046483,GO:0048285,GO:0048856,GO:0048869,GO:0050896,GO:0051321,GO:0051716,GO:0060429,GO:0061505,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.DNA topoisomerase VI subunit A
EggNOG OGsCOG1697@1,KOG2795@2759
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68040.14429.1prot_H-elongata_contig68040.14429.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68040 2281..2995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.4036088-CDS-H-elongata_contig68040:2280..24391622931073.4036088-CDS-H-elongata_contig68040:2280..2439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68040 2281..2439 -
1691679686.7279935-CDS-H-elongata_contig68040:2280..24391691679686.7279935-CDS-H-elongata_contig68040:2280..2439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68040 2281..2439 -
1622931073.4213197-CDS-H-elongata_contig68040:2848..29951622931073.4213197-CDS-H-elongata_contig68040:2848..2995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68040 2849..2995 -
1691679686.7380311-CDS-H-elongata_contig68040:2848..29951691679686.7380311-CDS-H-elongata_contig68040:2848..2995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68040 2849..2995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.4353008-UTR-H-elongata_contig68040:2995..30191622931073.4353008-UTR-H-elongata_contig68040:2995..3019Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68040 2996..3019 -
1691679686.7515087-UTR-H-elongata_contig68040:2995..30191691679686.7515087-UTR-H-elongata_contig68040:2995..3019Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68040 2996..3019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68040.14429.1

>prot_H-elongata_contig68040.14429.1 ID=prot_H-elongata_contig68040.14429.1|Name=mRNA_H-elongata_contig68040.14429.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQE
DFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDW
V*
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mRNA from alignment at H-elongata_contig68040:2281..3019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68040.14429.1 ID=mRNA_H-elongata_contig68040.14429.1|Name=mRNA_H-elongata_contig68040.14429.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=739bp|location=Sequence derived from alignment at H-elongata_contig68040:2281..3019- (Himanthalia elongata Himel1 dioecious)
ATATCAATTTCAGGTTCCAAGAACATGTCGTACGACAGCGCAAGCCTGAC
GACCCCAGACATCAAGTGGTTAGGGGTGAGGCCATCCGATCTGGACAGGT
ATAACATCCCGGAGCAATGCCGACTCGACATGACGGATCATGATATCAAG
ACCGGAAAAGAATTGCTACAAGTGAGATGTCGAGATGTCTATATTGTTAT
TGTAGAGGACACTCGGTCACCCGTCGCCGACCATTTTTAAAATTAGTATT
ATTATTGTTATTATTATGTAGTTGTATTTAGTTTTTTTGTGTGTGTTTTT
TCATTATTATTTTTTTCATTTGTGGCTTCAGTTTTTGGAAAAGGGGTCAT
TTTTGGTTGCCCGGTTTTCTTGTTGTTTTTTTTATTAGATATCTAAAGGT
GCGAATGTGTTCTTGCCTCTCATCCACTTGGGGTCTTTTACCTTCGATTA
TACTAAGGGCGAGGTCCGAAAGAGAGGCCCATTTTAAATGAAATGCCTGG
AAGAGCACGCTCTTTTTTCCTCACTGCGCATTTATTTTTATTTTTATTGT
GTGTGTGTGTGGTTTGTTTTTTTTCACCAGGAGGACTTCATAAAAAAGAG
CGATCCGTGGTGCAGAGAGCTGGAGCTGATGATCAAGTCGAAGAAAAAAG
CGGAGATTCAGTCCTTGTCCGCATTCGGGTTCCAGTACCTCACCCACACA
TACCTTCCTCAGAAGCTCCAAAACGGGGACTGGGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig68040:2281..3019-

>mRNA_H-elongata_contig68040.14429.1 ID=mRNA_H-elongata_contig68040.14429.1|Name=mRNA_H-elongata_contig68040.14429.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig68040:2281..3019- (Himanthalia elongata Himel1 dioecious)
ATGTCGTACGACAGCGCAAGCCTGACGACCCCAGACATCAAGTGGTTAGG
GGTGAGGCCATCCGATCTGGACAGGTATAACATCCCGGAGCAATGCCGAC
TCGACATGACGGATCATGATATCAAGACCGGAAAAGAATTGCTACAAATG
TCGTACGACAGCGCAAGCCTGACGACCCCAGACATCAAGTGGTTAGGGGT
GAGGCCATCCGATCTGGACAGGTATAACATCCCGGAGCAATGCCGACTCG
ACATGACGGATCATGATATCAAGACCGGAAAAGAATTGCTACAAGAGGAC
TTCATAAAAAAGAGCGATCCGTGGTGCAGAGAGCTGGAGCTGATGATCAA
GTCGAAGAAAAAAGCGGAGATTCAGTCCTTGTCCGCATTCGGGTTCCAGT
ACCTCACCCACACATACCTTCCTCAGAAGCTCCAAAACGGGGACTGGGTT
TGAGAGGACTTCATAAAAAAGAGCGATCCGTGGTGCAGAGAGCTGGAGCT
GATGATCAAGTCGAAGAAAAAAGCGGAGATTCAGTCCTTGTCCGCATTCG
GGTTCCAGTACCTCACCCACACATACCTTCCTCAGAAGCTCCAAAACGGG
GACTGGGTTTGA
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