mRNA_H-elongata_contig6803.14427.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6803.14427.1
Unique NamemRNA_H-elongata_contig6803.14427.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6803.14427.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.480e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:    2 CAGVGCSKLASYGKTGSTKREYCPEHALEGMVNVSNKRC 118
            C    C+K  +YG  GS KRE+C +HA +GMVNV+NKRC
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6803.14427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI73_ECTSI5.480e-556.41EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6803contigH-elongata_contig6803:7834..9289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1161
Cds size876
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6803.14427.1prot_H-elongata_contig6803.14427.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6803 7963..9133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.1422002-UTR-H-elongata_contig6803:7833..79621622931073.1422002-UTR-H-elongata_contig6803:7833..7962Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6803 7834..7962 +
1691679686.630212-UTR-H-elongata_contig6803:7833..79621691679686.630212-UTR-H-elongata_contig6803:7833..7962Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6803 7834..7962 +
1622931073.2121153-UTR-H-elongata_contig6803:9133..92891622931073.2121153-UTR-H-elongata_contig6803:9133..9289Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6803 9134..9289 +
1691679686.6648238-UTR-H-elongata_contig6803:9133..92891691679686.6648238-UTR-H-elongata_contig6803:9133..9289Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6803 9134..9289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.1777-CDS-H-elongata_contig6803:7962..80451622931073.1777-CDS-H-elongata_contig6803:7962..8045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6803 7963..8045 +
1691679686.6432106-CDS-H-elongata_contig6803:7962..80451691679686.6432106-CDS-H-elongata_contig6803:7962..8045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6803 7963..8045 +
1622931073.1979744-CDS-H-elongata_contig6803:8340..91331622931073.1979744-CDS-H-elongata_contig6803:8340..9133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6803 8341..9133 +
1691679686.6546528-CDS-H-elongata_contig6803:8340..91331691679686.6546528-CDS-H-elongata_contig6803:8340..9133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6803 8341..9133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6803.14427.1

>prot_H-elongata_contig6803.14427.1 ID=prot_H-elongata_contig6803.14427.1|Name=mRNA_H-elongata_contig6803.14427.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp
MFKASEVREDRKHEARVLRKACLGGDDYTKREYCFEHALKGMVNVSSKRC
AGEGCSTIASYGKVGSTKREYCAKHALEDIVFLRNQKCAGDGCLRQPSYG
KIGSTRREYCLEHALEGMVNVTSKKRCVGDGCFKLASYAKVGSKKREYCA
KHALDGMVNVSNKLCAGKECFKVLSYGKAGSTKRKYCTEHALEGDGCSNI
SPIAETGSVEKDYNAGYALEDMVCVVPHNSPRTRRRVSKIATSAVSVSKR
CITDTKVRDPSSETLVGPVLLKSEVQVGIGLANHSNGERKR*
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mRNA from alignment at H-elongata_contig6803:7834..9289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6803.14427.1 ID=mRNA_H-elongata_contig6803.14427.1|Name=mRNA_H-elongata_contig6803.14427.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1456bp|location=Sequence derived from alignment at H-elongata_contig6803:7834..9289+ (Himanthalia elongata Himel1 dioecious)
GTGTGCTGGTGTTGGATGTTCGAAGCTAGCGAGCTACGGGAAGACCGGTA
GCACGAAGCGAGAGTACTGCCCCGAGCATGCATTGGAGGGGATGGTCAAT
GTTTCGAACAAAAGGTGTGCTAATGATGGATGTTCAAGGCTAGCGAGGTA
CGGGAAGACCGGAAGCACGAAGCGAGAGTACTGCGCAAAGCATGCCTTGG
AGGGGATGATTAATATTAGCAACAGAACGTGCGCCGGCGATGGATGCATT
AAGCTATCAAGCTACGGGAAAGCTGGCAGCGCGAAACGGGAGTACTGCTC
CGAACATGCATTGGACGGAATGGTCAATGTTTCGAGCAAAAAGTGTGCTG
GTGATGATTGTTCAACTATAGCGAGCTACGGGAAGGCTGGAAGCACAAAA
CGAGAGTACTGCGCTAGGCATGCCTTGGGGGATATGGTATTTTTTAGGAA
CCAAAAGTGTGCAGGCGATGGATGCCTTAAGCAACCAAGCTACGGGAAGG
TTGGTAGCACTAAACGGGAGTACTGCTTCGAACATGCATTGAAGGGGATG
GTCAATGTTTCGAGTAAAAGGTGTGCTGGTGAAGGATGTTCAACTATAGC
GAGCTACGGGAAGGTTGGTAGCACGAAGCGAGAGTACTGTGCTAAGCATG
CCTTGGAGGATATAGTCTTTCTTAGGAACCAAAAGTGTGCCGGCGATGGA
TGCCTTAGGCAACCAAGCTACGGGAAGATTGGTAGCACTAGGCGGGAGTA
CTGCCTAGAGCATGCATTGGAGGGTATGGTCAATGTTACGAGCAAAAAAC
GTTGTGTCGGCGATGGATGTTTTAAGCTAGCGAGCTACGCGAAGGTTGGA
AGCAAGAAACGAGAGTACTGCGCTAAGCATGCCTTAGACGGAATGGTCAA
TGTTTCGAACAAGTTGTGTGCAGGCAAAGAATGCTTTAAGGTATTAAGCT
ACGGGAAGGCTGGCAGTACCAAACGGAAGTACTGCACCGAGCATGCATTA
GAAGGTGATGGATGTTCTAACATATCTCCCATTGCAGAGACCGGCAGCGT
GGAGAAGGATTACAACGCTGGGTATGCCTTGGAGGACATGGTCTGTGTCG
TTCCACACAACAGTCCAAGGACCAGGAGGCGGGTGTCGAAGATCGCTACA
TCGGCAGTATCCGTTTCGAAGAGATGTATAACCGATACTAAGGTTAGAGA
CCCCTCTTCCGAGACTTTAGTAGGTCCTGTTCTGTTGAAGTCAGAGGTCC
AAGTAGGTATTGGTCTTGCAAACCATTCTAATGGTGAACGGAAACGTTAA
ATTTGACATTGATGAACTTGACGTCTCAATATTCTTTCTTGAAGTGCTGT
CCACAAGCAGGGGAAACGAAATCCTTGCTTTTCTATTAATAGAGGGGATG
ACGACATACACGTTTAGAGCCCGAATTTTTTTTTTTTGAGGTTGTTTGAA
ACAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig6803:7834..9289+

>mRNA_H-elongata_contig6803.14427.1 ID=mRNA_H-elongata_contig6803.14427.1|Name=mRNA_H-elongata_contig6803.14427.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig6803:7834..9289+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAAGGCTAGCGAGGTACGGGAAGACCGGAAGCACGAAGCGAGAGT
ACTGCGCAAAGCATGCCTTGGAGGGGATGATTAATGTTCAAGGCTAGCGA
GGTACGGGAAGACCGGAAGCACGAAGCGAGAGTACTGCGCAAAGCATGCC
TTGGAGGGGATGATTACACTAAACGGGAGTACTGCTTCGAACATGCATTG
AAGGGGATGGTCAATGTTTCGAGTAAAAGGTGTGCTGGTGAAGGATGTTC
AACTATAGCGAGCTACGGGAAGGTTGGTAGCACGAAGCGAGAGTACTGTG
CTAAGCATGCCTTGGAGGATATAGTCTTTCTTAGGAACCAAAAGTGTGCC
GGCGATGGATGCCTTAGGCAACCAAGCTACGGGAAGATTGGTAGCACTAG
GCGGGAGTACTGCCTAGAGCATGCATTGGAGGGTATGGTCAATGTTACGA
GCAAAAAACGTTGTGTCGGCGATGGATGTTTTAAGCTAGCGAGCTACGCG
AAGGTTGGAAGCAAGAAACGAGAGTACTGCGCTAAGCATGCCTTAGACGG
AATGGTCAATGTTTCGAACAAGTTGTGTGCAGGCAAAGAATGCTTTAAGG
TATTAAGCTACGGGAAGGCTGGCAGTACCAAACGGAAGTACTGCACCGAG
CATGCATTAGAAGGTGATGGATGTTCTAACATATCTCCCATTGCAGAGAC
CGGCAGCGTGGAGAAGGATTACAACGCTGGGTATGCCTTGGAGGACATGG
TCTGTGTCGTTCCACACAACAGTCCAAGGACCAGGAGGCGGGTGTCGAAG
ATCGCTACATCGGCAGTATCCGTTTCGAAGAGATGTATAACCGATACTAA
GGTTAGAGACCCCTCTTCCGAGACTTTAGTAGGTCCTGTTCTGTTGAAGT
CAGAGGTCCAAGTAGGTATTGGTCTTGCAAACCATTCTAATGGTGAACGG
AAACGTTAACACTAAACGGGAGTACTGCTTCGAACATGCATTGAAGGGGA
TGGTCAATGTTTCGAGTAAAAGGTGTGCTGGTGAAGGATGTTCAACTATA
GCGAGCTACGGGAAGGTTGGTAGCACGAAGCGAGAGTACTGTGCTAAGCA
TGCCTTGGAGGATATAGTCTTTCTTAGGAACCAAAAGTGTGCCGGCGATG
GATGCCTTAGGCAACCAAGCTACGGGAAGATTGGTAGCACTAGGCGGGAG
TACTGCCTAGAGCATGCATTGGAGGGTATGGTCAATGTTACGAGCAAAAA
ACGTTGTGTCGGCGATGGATGTTTTAAGCTAGCGAGCTACGCGAAGGTTG
GAAGCAAGAAACGAGAGTACTGCGCTAAGCATGCCTTAGACGGAATGGTC
AATGTTTCGAACAAGTTGTGTGCAGGCAAAGAATGCTTTAAGGTATTAAG
CTACGGGAAGGCTGGCAGTACCAAACGGAAGTACTGCACCGAGCATGCAT
TAGAAGGTGATGGATGTTCTAACATATCTCCCATTGCAGAGACCGGCAGC
GTGGAGAAGGATTACAACGCTGGGTATGCCTTGGAGGACATGGTCTGTGT
CGTTCCACACAACAGTCCAAGGACCAGGAGGCGGGTGTCGAAGATCGCTA
CATCGGCAGTATCCGTTTCGAAGAGATGTATAACCGATACTAAGGTTAGA
GACCCCTCTTCCGAGACTTTAGTAGGTCCTGTTCTGTTGAAGTCAGAGGT
CCAAGTAGGTATTGGTCTTGCAAACCATTCTAATGGTGAACGGAAACGTT
AA
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