mRNA_H-elongata_contig6803.14426.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6803.14426.1
Unique NamemRNA_H-elongata_contig6803.14426.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6803.14426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6803contigH-elongata_contig6803:6680..7371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-15_000330.2
Exons1
Model size692
Cds size690
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.2629652-CDS-H-elongata_contig6803:6679..73691622931073.2629652-CDS-H-elongata_contig6803:6679..7369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6803 6680..7369 +
1691679686.6756997-CDS-H-elongata_contig6803:6679..73691691679686.6756997-CDS-H-elongata_contig6803:6679..7369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6803 6680..7369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6803.14426.1prot_H-elongata_contig6803.14426.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6803 6680..7369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6803.14426.1

>prot_H-elongata_contig6803.14426.1 ID=prot_H-elongata_contig6803.14426.1|Name=mRNA_H-elongata_contig6803.14426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
AESPSTAPSISWRNMMNFASMTRPEDGYSQPTYVAGSTSQDHCPNVKMEI
CTGYGCQKGSSYGKAGNPKPEYCSEHALEGMVNVVFSVCVVDECCNTATQ
GVAGSIKREFCSEHASEGVLIGKVSSKRCDVDGWCKLPSSGNPDFTRTKY
CAEHAFKGMINLASNMMCIDNGCYQRATIGVAEGKNRIYCSEHALEGMGN
GTNKRCAGDGCSKQASYKKAGNTKRAYCPE
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mRNA from alignment at H-elongata_contig6803:6680..7371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6803.14426.1 ID=mRNA_H-elongata_contig6803.14426.1|Name=mRNA_H-elongata_contig6803.14426.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=692bp|location=Sequence derived from alignment at H-elongata_contig6803:6680..7371+ (Himanthalia elongata Himel1 dioecious)
GCGGAAAGTCCAAGTACTGCGCCGAGTATTTCGTGGAGGAATATGATGAA
CTTTGCAAGTATGACCCGTCCGGAAGATGGATACTCACAACCGACCTACG
TAGCCGGTAGCACAAGCCAAGATCACTGCCCCAACGTTAAGATGGAAATA
TGTACTGGCTATGGATGTCAAAAGGGATCGAGCTACGGGAAGGCTGGAAA
CCCAAAACCCGAGTACTGTTCCGAGCATGCTTTGGAGGGGATGGTCAACG
TTGTTTTCAGTGTATGTGTCGTTGATGAGTGTTGTAACACAGCAACACAG
GGCGTCGCCGGCAGCATAAAGCGAGAATTTTGCTCCGAGCATGCATCGGA
AGGGGTATTAATAGGTAAAGTTTCTTCGAAAAGGTGTGATGTTGATGGTT
GGTGTAAATTACCAAGCTCTGGCAATCCTGACTTCACAAGAACCAAGTAC
TGCGCCGAGCATGCATTTAAGGGGATGATCAACCTTGCTTCCAACATGAT
GTGTATCGATAATGGATGCTATCAAAGAGCGACCATAGGAGTGGCCGAAG
GCAAAAATCGTATTTACTGCTCTGAGCATGCTCTGGAGGGAATGGGCAAT
GGTACGAACAAGAGGTGTGCTGGTGATGGATGTTCAAAGCAAGCGAGCTA
CAAAAAGGCTGGAAACACGAAGCGAGCGTACTGCCCCGAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig6803:6680..7371+

>mRNA_H-elongata_contig6803.14426.1 ID=mRNA_H-elongata_contig6803.14426.1|Name=mRNA_H-elongata_contig6803.14426.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig6803:6680..7371+ (Himanthalia elongata Himel1 dioecious)
GCGGAAAGTCCAAGTACTGCGCCGAGTATTTCGTGGAGGAATATGATGAA
CTTTGCAAGTATGACCCGTCCGGAAGATGGATACTCACAACCGACCTACG
TAGCCGGTAGCACAAGCCAAGATCACTGCCCCAACGTTAAGATGGAAATA
TGTACTGGCTATGGATGTCAAAAGGGATCGAGCTACGGGAAGGCTGGAAA
CCCAAAACCCGAGTACTGTTCCGAGCATGCTTTGGAGGGGATGGTCAACG
TTGTTTTCAGTGTATGTGTCGTTGATGAGTGTTGTAACACAGCAACACAG
GGCGTCGCCGGCAGCATAAAGCGAGAATTTTGCTCCGAGCATGCATCGGA
AGGGGTATTAATAGGTAAAGTTTCTTCGAAAAGGTGTGATGTTGATGGTT
GGTGTAAATTACCAAGCTCTGGCAATCCTGACTTCACAAGAACCAAGTAC
TGCGCCGAGCATGCATTTAAGGGGATGATCAACCTTGCTTCCAACATGAT
GTGTATCGATAATGGATGCTATCAAAGAGCGACCATAGGAGTGGCCGAAG
GCAAAAATCGTATTTACTGCTCTGAGCATGCTCTGGAGGGAATGGGCAAT
GGTACGAACAAGAGGTGTGCTGGTGATGGATGTTCAAAGCAAGCGAGCTA
CAAAAAGGCTGGAAACACGAAGCGAGCGTACTGCCCCGAGGCGGAAAGTC
CAAGTACTGCGCCGAGTATTTCGTGGAGGAATATGATGAACTTTGCAAGT
ATGACCCGTCCGGAAGATGGATACTCACAACCGACCTACGTAGCCGGTAG
CACAAGCCAAGATCACTGCCCCAACGTTAAGATGGAAATATGTACTGGCT
ATGGATGTCAAAAGGGATCGAGCTACGGGAAGGCTGGAAACCCAAAACCC
GAGTACTGTTCCGAGCATGCTTTGGAGGGGATGGTCAACGTTGTTTTCAG
TGTATGTGTCGTTGATGAGTGTTGTAACACAGCAACACAGGGCGTCGCCG
GCAGCATAAAGCGAGAATTTTGCTCCGAGCATGCATCGGAAGGGGTATTA
ATAGGTAAAGTTTCTTCGAAAAGGTGTGATGTTGATGGTTGGTGTAAATT
ACCAAGCTCTGGCAATCCTGACTTCACAAGAACCAAGTACTGCGCCGAGC
ATGCATTTAAGGGGATGATCAACCTTGCTTCCAACATGATGTGTATCGAT
AATGGATGCTATCAAAGAGCGACCATAGGAGTGGCCGAAGGCAAAAATCG
TATTTACTGCTCTGAGCATGCTCTGGAGGGAATGGGCAATGGTACGAACA
AGAGGTGTGCTGGTGATGGATGTTCAAAGCAAGCGAGCTACAAAAAGGCT
GGAAACACGAAGCGAGCGTACTGCCCCGAG
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