mRNA_H-elongata_contig68018.14425.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68018.14425.1
Unique NamemRNA_H-elongata_contig68018.14425.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: A0A3B1J4P0_ASTMX (TTF-type domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J4P0_ASTMX)

HSP 1 Score: 60.1 bits (144), Expect = 1.200e-7
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:  145 KLYAQFWRTVQNSRGG-SRFRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRIS 351
            K Y+  W  + +     S F+N+  LA I +  P +  +CERGFSAQNRIK K RN L VS +E L+RIS
Sbjct:  536 KSYSGLWEVMLSKEPYCSDFQNIFHLAEIMLVLPISAAQCERGFSAQNRIKSKVRNSLNVSTVEDLVRIS 605          
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM)

HSP 1 Score: 57.0 bits (136), Expect = 2.970e-7
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1
Query:  199 FRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISL 354
            F N+ KL  I    P + +ECERGFS QN+IK KDRN L  + L+ LMR+SL
Sbjct:   86 FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137          
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: UPI0011C0D78D (zinc finger protein 862-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0D78D)

HSP 1 Score: 55.8 bits (133), Expect = 4.090e-7
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1
Query:  145 KLYAQFWRTVQNSRG-GSRFRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISL 354
            K Y+  W  +       + +RN+ +L  I +  P +  +CERGFSAQNRIK   R+ L VS  E LMRISL
Sbjct:   18 KSYSDLWELLLTKDPYKTDYRNILELVMIMLVLPISAAQCERGFSAQNRIKTSTRSSLAVSTTEDLMRISL 88          
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: UPI0007AD13DB (zinc finger protein 862-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AD13DB)

HSP 1 Score: 55.5 bits (132), Expect = 2.290e-6
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query:  145 KLYAQFWRTVQNSRGGSR-FRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISL 354
            K Y+  W  +       + ++N+ +L  I +  P +  +CERGFSAQNRIK   R+ L VS  E LMRISL
Sbjct:  112 KTYSGLWEMLMTKDPYKQDYKNILELVQIMLVLPISAAQCERGFSAQNRIKNSTRSCLGVSTTEDLMRISL 182          
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: A0A820CMF8_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820CMF8_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 3.450e-6
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  157 QFWRT------VQNSRGGSRFRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISLAYR 363
            +FW++        NS    +++N+  L NIY+  P   +ECERGFSA NR++   R+RL VS L+ LM I +  +
Sbjct:  346 EFWKSFILLKQTTNSLFNDQYKNIFLLLNIYLISPTNSVECERGFSAINRVQTIGRSRLMVSTLDALMTIRMLLK 420          
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: A0A817IQ62_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817IQ62_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 3.690e-6
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  157 QFWRT------VQNSRGGSRFRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISLAYR 363
            +FW++        NS    +++N+  L NIY+  P   +ECERGFSA NR++   R+RL VS L+ LM I +  +
Sbjct:  719 EFWKSFILLKQTTNSLFNDQYKNIFLLLNIYLISPTNSVECERGFSAINRVQTIGRSRLMVSTLDALMTIRMLLK 793          
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: UPI000CDF6657 (zinc finger protein 862-like n=1 Tax=Salvelinus alpinus TaxID=8036 RepID=UPI000CDF6657)

HSP 1 Score: 53.1 bits (126), Expect = 4.640e-6
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1
Query:  145 KLYAQFWRTVQNSRGGSR-FRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISLAY 360
            K Y+  W T+         ++N+ +L  + +  P +  +CERGFSAQNRIK   R+ L  S  E LMRISL +
Sbjct:   22 KSYSGLWETMLTKDPYRHDYKNILELVQLMLALPISAAQCERGFSAQNRIKNLTRSCLGASTTEDLMRISLDW 94          
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: UPI0007B8D399 (uncharacterized protein LOC107662498 n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8D399)

HSP 1 Score: 53.1 bits (126), Expect = 1.610e-5
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 1
Query:  145 KLYAQFWRTVQNSRGGS-RFRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRIS 351
            K Y+  W+T+      +  ++N+  L  + +  P +  +CERGFSAQNRIK   R+ L VS  E L++IS
Sbjct:  115 KSYSSLWQTLSTKEPYNVDYKNILHLVEMMLILPISAAQCERGFSAQNRIKNSTRSSLHVSTTEDLIQIS 184          
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW)

HSP 1 Score: 53.9 bits (128), Expect = 1.620e-5
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1
Query:  199 FRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISL 354
            F N+ KL  I    P + +ECERGFS QN+IK KDRN L  + L+ LM ISL
Sbjct:  544 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595          
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353)

HSP 1 Score: 53.9 bits (128), Expect = 1.740e-5
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1
Query:  199 FRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISL 354
            F N+ KL  I    P + +ECERGFS QN+IK KDRN L  + L+ LM ISL
Sbjct:  614 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A3B1J4P0_ASTMX1.200e-747.14TTF-type domain-containing protein n=1 Tax=Astyana... [more]
A0A8H3LT90_9GLOM2.970e-753.85Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
UPI0011C0D78D4.090e-743.66zinc finger protein 862-like n=1 Tax=Sparus aurata... [more]
UPI0007AD13DB2.290e-642.25zinc finger protein 862-like n=1 Tax=Sinocyclochei... [more]
A0A820CMF8_9BILA3.450e-638.67Hypothetical protein n=4 Tax=Rotaria sp. Silwood2 ... [more]
A0A817IQ62_9BILA3.690e-638.67Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]
UPI000CDF66574.640e-639.73zinc finger protein 862-like n=1 Tax=Salvelinus al... [more]
UPI0007B8D3991.610e-538.57uncharacterized protein LOC107662498 n=1 Tax=Sinoc... [more]
A0A015J8B3_RHIIW1.620e-553.85Uncharacterized protein n=13 Tax=Rhizophagus irreg... [more]
UPI001C19C3531.740e-553.85Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68018contigH-elongata_contig68018:2153..2611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68018.14425.1prot_H-elongata_contig68018.14425.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68018 2167..2610 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.9643636-UTR-H-elongata_contig68018:2152..21661622931072.9643636-UTR-H-elongata_contig68018:2152..2166Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68018 2153..2166 +
1691679686.5919535-UTR-H-elongata_contig68018:2152..21661691679686.5919535-UTR-H-elongata_contig68018:2152..2166Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68018 2153..2166 +
1622931073.0008576-UTR-H-elongata_contig68018:2610..26111622931073.0008576-UTR-H-elongata_contig68018:2610..2611Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68018 2611..2611 +
1691679686.617123-UTR-H-elongata_contig68018:2610..26111691679686.617123-UTR-H-elongata_contig68018:2610..2611Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68018 2611..2611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.9807005-CDS-H-elongata_contig68018:2166..26101622931072.9807005-CDS-H-elongata_contig68018:2166..2610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68018 2167..2610 +
1691679686.6051693-CDS-H-elongata_contig68018:2166..26101691679686.6051693-CDS-H-elongata_contig68018:2166..2610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68018 2167..2610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68018.14425.1

>prot_H-elongata_contig68018.14425.1 ID=prot_H-elongata_contig68018.14425.1|Name=mRNA_H-elongata_contig68018.14425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MLLQLPCYSLLWHTAPGARKCLALMEQKIVPFGSKRMTASVELEAVCTVL
EDSPEFARRIEVPQRGQARKYLHHAAARVNRVRAWVLRPEQDQTQGPKPS
GGLSPRAFDADLFGVQTARHQSDGRDGNTFSRKRLSFSTRRIAGVDM*
back to top

mRNA from alignment at H-elongata_contig68018:2153..2611+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68018.14425.1 ID=mRNA_H-elongata_contig68018.14425.1|Name=mRNA_H-elongata_contig68018.14425.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at H-elongata_contig68018:2153..2611+ (Himanthalia elongata Himel1 dioecious)
GTTTATCATACACGATGCTCCTGCAGCTTCCCTGCTACAGCTTGCTGTGG CACACGGCACCCGGCGCACGTAAATGTCTAGCTCTCATGGAGCAGAAAAT AGTCCCATTCGGATCGAAGAGGATGACAGCCAGCGTGGAACTAGAAGCTG TATGCACAGTTTTGGAGGACAGTCCAGAATTCGCGAGGAGGATCGAGGTT CCGCAACGTGGACAAGCTCGCAAATATTTACATCACGCAGCCGCACGCGT TAATCGAGTGCGAGCGTGGGTTCTCCGCCCAGAACAGGATCAAACGCAAG GACCGAAACCGTCTGGAGGTCTCTCGCCTCGAGCATTTGATGCGGATCTC TTTGGCGTACAGACAGCAAGGCATCAATCTGACGGCCGAGACGGCAACAC ATTCTCCAGGAAGCGGCTAAGCTTTTCGACCAGAAGAATCGCAGGCGTTG ATATGTAGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig68018:2153..2611+

>mRNA_H-elongata_contig68018.14425.1 ID=mRNA_H-elongata_contig68018.14425.1|Name=mRNA_H-elongata_contig68018.14425.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig68018:2153..2611+ (Himanthalia elongata Himel1 dioecious)
ATGCTCCTGCAGCTTCCCTGCTACAGCTTGCTGTGGCACACGGCACCCGG
CGCACGTAAATGTCTAGCTCTCATGGAGCAGAAAATAGTCCCATTCGGAT
CGAAGAGGATGACAGCCAGCGTGGAACTAGAAGCTGTATGCACAGTTTTG
GAGGACAGTCCAGAATTCGCGAGGAGGATCGAGGTTCCGCAACGTGGACA
AGCTCGCAAATATTTACATCACGCAGCCGCACGCGTTAATCGAGTGCGAG
CGTGGGTTCTCCGCCCAGAACAGGATCAAACGCAAGGACCGAAACCGTCT
GGAGGTCTCTCGCCTCGAGCATTTGATGCGGATCTCTTTGGCGTACAGAC
AGCAAGGCATCAATCTGACGGCCGAGACGGCAACACATTCTCCAGGAAGC
GGCTAAGCTTTTCGACCAGAAGAATCGCAGGCGTTGATATGTAGATGCTC
CTGCAGCTTCCCTGCTACAGCTTGCTGTGGCACACGGCACCCGGCGCACG
TAAATGTCTAGCTCTCATGGAGCAGAAAATAGTCCCATTCGGATCGAAGA
GGATGACAGCCAGCGTGGAACTAGAAGCTGTATGCACAGTTTTGGAGGAC
AGTCCAGAATTCGCGAGGAGGATCGAGGTTCCGCAACGTGGACAAGCTCG
CAAATATTTACATCACGCAGCCGCACGCGTTAATCGAGTGCGAGCGTGGG
TTCTCCGCCCAGAACAGGATCAAACGCAAGGACCGAAACCGTCTGGAGGT
CTCTCGCCTCGAGCATTTGATGCGGATCTCTTTGGCGTACAGACAGCAAG
GCATCAATCTGACGGCCGAGACGGCAACACATTCTCCAGGAAGCGGCTAA
GCTTTTCGACCAGAAGAATCGCAGGCGTTGATATGTAG
back to top