mRNA_H-elongata_contig68018.14425.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: A0A3B1J4P0_ASTMX (TTF-type domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J4P0_ASTMX) HSP 1 Score: 60.1 bits (144), Expect = 1.200e-7 Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 145 KLYAQFWRTVQNSRGG-SRFRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRIS 351
K Y+ W + + S F+N+ LA I + P + +CERGFSAQNRIK K RN L VS +E L+RIS
Sbjct: 536 KSYSGLWEVMLSKEPYCSDFQNIFHLAEIMLVLPISAAQCERGFSAQNRIKSKVRNSLNVSTVEDLVRIS 605
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM) HSP 1 Score: 57.0 bits (136), Expect = 2.970e-7 Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 199 FRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISL 354
F N+ KL I P + +ECERGFS QN+IK KDRN L + L+ LMR+SL
Sbjct: 86 FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: UPI0011C0D78D (zinc finger protein 862-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0D78D) HSP 1 Score: 55.8 bits (133), Expect = 4.090e-7 Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 145 KLYAQFWRTVQNSRG-GSRFRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISL 354
K Y+ W + + +RN+ +L I + P + +CERGFSAQNRIK R+ L VS E LMRISL
Sbjct: 18 KSYSDLWELLLTKDPYKTDYRNILELVMIMLVLPISAAQCERGFSAQNRIKTSTRSSLAVSTTEDLMRISL 88
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: UPI0007AD13DB (zinc finger protein 862-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AD13DB) HSP 1 Score: 55.5 bits (132), Expect = 2.290e-6 Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 145 KLYAQFWRTVQNSRGGSR-FRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISL 354
K Y+ W + + ++N+ +L I + P + +CERGFSAQNRIK R+ L VS E LMRISL
Sbjct: 112 KTYSGLWEMLMTKDPYKQDYKNILELVQIMLVLPISAAQCERGFSAQNRIKNSTRSCLGVSTTEDLMRISL 182
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: A0A820CMF8_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820CMF8_9BILA) HSP 1 Score: 55.8 bits (133), Expect = 3.450e-6 Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 157 QFWRT------VQNSRGGSRFRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISLAYR 363
+FW++ NS +++N+ L NIY+ P +ECERGFSA NR++ R+RL VS L+ LM I + +
Sbjct: 346 EFWKSFILLKQTTNSLFNDQYKNIFLLLNIYLISPTNSVECERGFSAINRVQTIGRSRLMVSTLDALMTIRMLLK 420
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: A0A817IQ62_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817IQ62_9BILA) HSP 1 Score: 55.8 bits (133), Expect = 3.690e-6 Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 157 QFWRT------VQNSRGGSRFRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISLAYR 363
+FW++ NS +++N+ L NIY+ P +ECERGFSA NR++ R+RL VS L+ LM I + +
Sbjct: 719 EFWKSFILLKQTTNSLFNDQYKNIFLLLNIYLISPTNSVECERGFSAINRVQTIGRSRLMVSTLDALMTIRMLLK 793
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: UPI000CDF6657 (zinc finger protein 862-like n=1 Tax=Salvelinus alpinus TaxID=8036 RepID=UPI000CDF6657) HSP 1 Score: 53.1 bits (126), Expect = 4.640e-6 Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1
Query: 145 KLYAQFWRTVQNSRGGSR-FRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISLAY 360
K Y+ W T+ ++N+ +L + + P + +CERGFSAQNRIK R+ L S E LMRISL +
Sbjct: 22 KSYSGLWETMLTKDPYRHDYKNILELVQLMLALPISAAQCERGFSAQNRIKNLTRSCLGASTTEDLMRISLDW 94
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: UPI0007B8D399 (uncharacterized protein LOC107662498 n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8D399) HSP 1 Score: 53.1 bits (126), Expect = 1.610e-5 Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 145 KLYAQFWRTVQNSRGGS-RFRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRIS 351
K Y+ W+T+ + ++N+ L + + P + +CERGFSAQNRIK R+ L VS E L++IS
Sbjct: 115 KSYSSLWQTLSTKEPYNVDYKNILHLVEMMLILPISAAQCERGFSAQNRIKNSTRSSLHVSTTEDLIQIS 184
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW) HSP 1 Score: 53.9 bits (128), Expect = 1.620e-5 Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 199 FRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISL 354
F N+ KL I P + +ECERGFS QN+IK KDRN L + L+ LM ISL
Sbjct: 544 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353) HSP 1 Score: 53.9 bits (128), Expect = 1.740e-5 Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 199 FRNVDKLANIYITQPHALIECERGFSAQNRIKRKDRNRLEVSRLEHLMRISL 354
F N+ KL I P + +ECERGFS QN+IK KDRN L + L+ LM ISL
Sbjct: 614 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68018.14425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68018.14425.1 >prot_H-elongata_contig68018.14425.1 ID=prot_H-elongata_contig68018.14425.1|Name=mRNA_H-elongata_contig68018.14425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp MLLQLPCYSLLWHTAPGARKCLALMEQKIVPFGSKRMTASVELEAVCTVLback to top mRNA from alignment at H-elongata_contig68018:2153..2611+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68018.14425.1 ID=mRNA_H-elongata_contig68018.14425.1|Name=mRNA_H-elongata_contig68018.14425.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at H-elongata_contig68018:2153..2611+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68018:2153..2611+ >mRNA_H-elongata_contig68018.14425.1 ID=mRNA_H-elongata_contig68018.14425.1|Name=mRNA_H-elongata_contig68018.14425.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig68018:2153..2611+ (Himanthalia elongata Himel1 dioecious)back to top |