mRNA_H-elongata_contig67991.14419.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67991.14419.1
Unique NamemRNA_H-elongata_contig67991.14419.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Match: F8UWN5_9PHAE (NADH dehydrogenase subunit 11 n=73 Tax=Phaeophyceae TaxID=2870 RepID=F8UWN5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.390e-23
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 NISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVE 147
            NISINELLIWVK+GSTVIQACQ AG NIP FCYHDKLFIA +CRMCLVE
Sbjct:    3 NISINELLIWVKKGSTVIQACQAAGANIPRFCYHDKLFIAGNCRMCLVE 51
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BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Match: A0A2R4QQ95_9PHAE (NADH dehydrogenase subunit 11 n=6 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ95_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.920e-23
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 NISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVE 147
            NISINELLIWVK+GSTVIQACQ+AGV IP FCYHDKLFIA +CRMCLVE
Sbjct:    3 NISINELLIWVKKGSTVIQACQSAGVKIPRFCYHDKLFIAGNCRMCLVE 51
[Close]
BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Match: A0A0G2RLB7_TUROR (NADH dehydrogenase subunit 11 n=24 Tax=Sargassaceae TaxID=3014 RepID=A0A0G2RLB7_TUROR)

HSP 1 Score: 93.2 bits (230), Expect = 2.060e-22
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 NISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVE 147
            NI+INELLIWVK+GSTVIQAC+ AGV IP FCYHDKLFIA +CRMCLVE
Sbjct:    3 NITINELLIWVKKGSTVIQACEAAGVKIPRFCYHDKLFIAGNCRMCLVE 51
[Close]
BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Match: A0A8F0K0N1_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K0N1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.160e-22
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 NISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVE 147
            NISINELL+WVK+GSTVIQACQ AG  IP FCYHDKLF+A +CRMCLVE
Sbjct:    3 NISINELLVWVKKGSTVIQACQAAGAKIPRFCYHDKLFVAGNCRMCLVE 51
[Close]
BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Match: E6ZET3_ECTSI (NADH dehydrogenase subunit 11 n=3 Tax=Ectocarpales TaxID=2877 RepID=E6ZET3_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 3.790e-20
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    4 ISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVE 147
            ISIN+L++WV++GSTVIQACQ AG  +P FCYHDKLF+A +CRMCLVE
Sbjct:    4 ISINDLIVWVRKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVE 51
[Close]
BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Match: Q9XNR7_PYLLI (NADH dehydrogenase subunit 11 n=6 Tax=Ectocarpales TaxID=2877 RepID=Q9XNR7_PYLLI)

HSP 1 Score: 87.4 bits (215), Expect = 4.030e-20
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    4 ISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVE 147
            IS+N+L+IW+K+GSTVIQACQ AG  +P FCYHDKLFIA +CRMCLVE
Sbjct:    4 ISVNDLVIWLKKGSTVIQACQVAGAQVPRFCYHDKLFIAGNCRMCLVE 51
[Close]
BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Match: A0A8E8U4G1_9PHAE (Nad11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4G1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.740e-18
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 NISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVE 147
            +I INE+++WVK GSTVIQACQ  G  IP FCYHDKL IA +CRMCLVE
Sbjct:    3 SIHINEIIVWVKRGSTVIQACQAVGAIIPRFCYHDKLSIAGNCRMCLVE 51
[Close]
BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Match: Q2TUA0_DICDH (NADH dehydrogenase subunit 11 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUA0_DICDH)

HSP 1 Score: 79.0 bits (193), Expect = 6.430e-17
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    4 ISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVE 147
            I+IN L++WVK GSTV+QAC+ AG  +P FCYH+KL IA +CRMCLVE
Sbjct:    3 ITINNLVVWVKGGSTVLQACEAAGEEVPRFCYHEKLLIAGNCRMCLVE 50
[Close]
BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Match: A0A4Y5T8Q6_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8Q6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.280e-16
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    4 ISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVE 147
            I IN L++WVK+GSTV+QAC+  G  IP FCYH KLF+A +CRMCLVE
Sbjct:    3 IIINNLVVWVKKGSTVLQACEAVGEEIPRFCYHKKLFLAGNCRMCLVE 50
[Close]
BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Match: A0A8F0FDA4_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDA4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.830e-16
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 ISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVE 147
            I IN L+IWVK+GSTV+QAC+  G  IP FCYH KLFIA +CRMC VE
Sbjct:    3 IIINNLIIWVKKGSTVLQACEAIGEKIPRFCYHKKLFIAGNCRMCFVE 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67991.14419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F8UWN5_9PHAE1.390e-2387.76NADH dehydrogenase subunit 11 n=73 Tax=Phaeophycea... [more]
A0A2R4QQ95_9PHAE1.920e-2387.76NADH dehydrogenase subunit 11 n=6 Tax=Fucus TaxID=... [more]
A0A0G2RLB7_TUROR2.060e-2283.67NADH dehydrogenase subunit 11 n=24 Tax=Sargassacea... [more]
A0A8F0K0N1_9PHAE2.160e-2281.63NADH dehydrogenase subunit 11 n=1 Tax=Desmarestia ... [more]
E6ZET3_ECTSI3.790e-2072.92NADH dehydrogenase subunit 11 n=3 Tax=Ectocarpales... [more]
Q9XNR7_PYLLI4.030e-2075.00NADH dehydrogenase subunit 11 n=6 Tax=Ectocarpales... [more]
A0A8E8U4G1_9PHAE4.740e-1871.43Nad11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID... [more]
Q2TUA0_DICDH6.430e-1766.67NADH dehydrogenase subunit 11 n=1 Tax=Dictyota dic... [more]
A0A4Y5T8Q6_9PHAE1.280e-1666.67NADH dehydrogenase subunit 11 n=1 Tax=Dictyopteris... [more]
A0A8F0FDA4_9PHAE1.830e-1668.75NADH dehydrogenase subunit 11 n=1 Tax=Protohalopte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67991contigH-elongata_contig67991:1580..1729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.0
Seed ortholog evalue8.8e-11
Seed eggNOG ortholog51511.ENSCSAVP00000008534
Preferred nameNDUFS1
KEGG rclassRC00061
KEGG koko:K03934
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005758,GO:0005759,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042391,GO:0042773,GO:0042775,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0048037,GO:0050136,GO:0051536,GO:0051540,GO:0051881,GO:0055086,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.2 iron, 2 sulfur cluster binding
EggNOG OGs38DHR@33154,3BE04@33208,3CT34@33213,482GT@7711,COG1034@1,KOG2282@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.4889498-CDS-H-elongata_contig67991:1579..17291622931072.4889498-CDS-H-elongata_contig67991:1579..1729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67991 1580..1729 -
1691679686.4172735-CDS-H-elongata_contig67991:1579..17291691679686.4172735-CDS-H-elongata_contig67991:1579..1729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67991 1580..1729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67991.14419.1prot_H-elongata_contig67991.14419.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67991 1580..1729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67991.14419.1

>prot_H-elongata_contig67991.14419.1 ID=prot_H-elongata_contig67991.14419.1|Name=mRNA_H-elongata_contig67991.14419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
NISINELLIWVKEGSTVIQACQTAGVNIPIFCYHDKLFIACSCRMCLVEL
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mRNA from alignment at H-elongata_contig67991:1580..1729-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67991.14419.1 ID=mRNA_H-elongata_contig67991.14419.1|Name=mRNA_H-elongata_contig67991.14419.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig67991:1580..1729- (Himanthalia elongata Himel1 dioecious)
AATATATCTATAAATGAACTTTTAATTTGGGTAAAAGAAGGATCTACTGT
TATTCAAGCATGTCAAACAGCAGGTGTAAATATCCCTATATTTTGTTATC
ACGATAAGCTTTTTATTGCTTGTAGCTGCCGTATGTGTTTAGTGGAGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig67991:1580..1729-

>mRNA_H-elongata_contig67991.14419.1 ID=mRNA_H-elongata_contig67991.14419.1|Name=mRNA_H-elongata_contig67991.14419.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig67991:1580..1729- (Himanthalia elongata Himel1 dioecious)
AATATATCTATAAATGAACTTTTAATTTGGGTAAAAGAAGGATCTACTGT
TATTCAAGCATGTCAAACAGCAGGTGTAAATATCCCTATATTTTGTTATC
ACGATAAGCTTTTTATTGCTTGTAGCTGCCGTATGTGTTTAGTGGAGTTG
AATATATCTATAAATGAACTTTTAATTTGGGTAAAAGAAGGATCTACTGT
TATTCAAGCATGTCAAACAGCAGGTGTAAATATCCCTATATTTTGTTATC
ACGATAAGCTTTTTATTGCTTGTAGCTGCCGTATGTGTTTAGTGGAGTTG
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