mRNA_H-elongata_contig6797.14413.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 234 bits (597), Expect = 3.930e-72 Identity = 116/217 (53.46%), Postives = 154/217 (70.97%), Query Frame = 1
Query: 1 QSITGAIMYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 609
Q I G++MY+ QV +YD +YA QLAR M+KP K H+ AK+ LRYLAG+ +FSITY++G NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+ AMKE++FC N+M ELGF K F ++PVY +NT+ LH N++ S R KHIALR+ F++ELV EG+++IH+ TE L D+GT + +KHR L+ LIN F
Sbjct: 219 QGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 231 bits (588), Expect = 1.040e-68 Identity = 115/215 (53.49%), Postives = 153/215 (71.16%), Query Frame = 1
Query: 1 QSITGAIMYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLIN 603
Q I G++MY+ QV +YD +YA QLAR M+KP K H+ AK+ LRYLAG+ +FSITY++G NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+ AMKE++FC N+M ELG K F ++PVY +NT+ LH N++ S R KHIALR+ F++ELV EG+++IH+V TE L D+GT + +KHR L+ LIN
Sbjct: 440 QGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 218 bits (555), Expect = 1.180e-68 Identity = 110/210 (52.38%), Postives = 144/210 (68.57%), Query Frame = 1
Query: 22 MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 609
MY+ QV +YD +YA LAR M+KP K H AK LRYLAG+ +FSITY++G NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+ AMKE++FC N+M ELGF K F ++PVY +NT+ LH N++ S R KHIALR+ F++ELV EG+++IH+ TE L +GT + +KHR L+ IN F
Sbjct: 1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 235 bits (599), Expect = 2.010e-68 Identity = 116/217 (53.46%), Postives = 155/217 (71.43%), Query Frame = 1
Query: 1 QSITGAIMYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 609
Q I G++MY+ QV +YD +YA QLAR M+KP K H+ AK+ LRYLAG+ +FSITY++G NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+ AMKE++FC N+M ELGF K F ++PVY +NT+ LH N++ S R KHIALR+ F++ELV EG+++IH+V+TE L D+GT + + HR L+ LIN F
Sbjct: 779 QGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 230 bits (587), Expect = 2.800e-66 Identity = 115/217 (53.00%), Postives = 153/217 (70.51%), Query Frame = 1
Query: 1 QSITGAIMYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 609
Q I G++MY+ QV +YD +YA QLAR M+KP K H+ AK+ LRYLAG+ +FSITY++G NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+ AM E++F N+M ELGF K F ++PVY +NT+ LH N++ S R KHIALR+ F++ELV EG+++IH+V TE L D+GT + +KHR L+ LIN F
Sbjct: 1448 QGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 226 bits (575), Expect = 4.440e-65 Identity = 112/215 (52.09%), Postives = 155/215 (72.09%), Query Frame = 1
Query: 4 SITGAIMYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINE 606
+I G+++YL Q+++YD +Y +QLAR MS P K H+ AK++LRYL+GS +FSITY+RG NPDN KS SSYI++++ P+SFK G+QSLTA ST+EAELVAA AMKE++FC N+M ELGF FR P+YIN T+ LHV N+T S R KH+ALR+ +++E+VKEG+++IH++ TE L D+GT +L+K RH LI I +
Sbjct: 474 AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYIN-TATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIKK 687
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 216 bits (551), Expect = 1.370e-62 Identity = 107/217 (49.31%), Postives = 151/217 (69.59%), Query Frame = 1
Query: 1 QSITGAIMYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 609
Q+I G++MYL QV++YD +Y +Q AR MS P K H+ AK++LRYL+GS +FSITY+RG N DN KS SSYI++++ P S K G+QSLTA ST+EAELVA+ AMKE +FC N+M ELGF F P++I++T+ L+V N+T S KH+ALR+ +++++VKEG+++IH++ TE L D+GT YL+K RH +LI I F
Sbjct: 560 QAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 206 bits (523), Expect = 9.500e-59 Identity = 103/219 (47.03%), Postives = 143/219 (65.30%), Query Frame = 1
Query: 1 QSITGAIMYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEFRA 615
Q I G ++YL Q+ +YD +YA +QLAR M+KP K H+ AK RYLAG+ F I Y+RG NPDN KSTSS++ +L + P++FK G+QSLT QSTME ELVAA A+KE++FC N++ ELGF K +VP+Y +NT+ LH N++ S KHIALR+ F++ELV EG++ IH+V + D+GT +L+K R L+ +I F
Sbjct: 502 QGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE) HSP 1 Score: 184 bits (467), Expect = 1.670e-54 Identity = 93/168 (55.36%), Postives = 120/168 (71.43%), Query Frame = 1
Query: 7 ITGAIMYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALR 468
I G++MY+ QV +YD +YA QLAR M+KP K H+ AK+ LRYLAG+ +FSITY++G NPDN KSTSSY+ +LAN P+SF+ G+Q LTA STMEAELVA+ AMKE++FC N+M ELGF K F ++PVY +NT+ LH N++ S R KHIALR
Sbjct: 98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALR 265
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.130e-48 Identity = 96/217 (44.24%), Postives = 135/217 (62.21%), Query Frame = 1
Query: 1 QSITGAIMYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYRRG--------------NPDNDKSTSSYIVILANEPISFKVGVQSLTAQSTMEAELVAATTAMKESLFCRNVMMELGFAKGFRRVPVYINNTSALHVAVNKTSSPRAKHIALRYVFVQELVKEGQVTIHFVKTEHQLTDLGTTYLSKHRHHFLIKLINEF 609
QS+TG+I+YL Q +Q+D YA QL++ S P + ++ AK+VLRYL G+ I Y+RG NPDN +ST+ Y+ LA IS+ Q+LTAQST+EAE+ A + + +E+++ N M EL F K F VP+ ++T AL VA N S R KH+ALRY F++ELV GQ+T+H +EHQL D+ T YL KHR +I+ I +F
Sbjct: 276 QSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 491 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6797.14413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6797.14413.1 >prot_H-elongata_contig6797.14413.1 ID=prot_H-elongata_contig6797.14413.1|Name=mRNA_H-elongata_contig6797.14413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp MYLVQVSQYDTLYAVNQLAREMSKPLKAHIRVAKYVLRYLAGSANFSITYback to top mRNA from alignment at H-elongata_contig6797:5425..6084+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6797.14413.1 ID=mRNA_H-elongata_contig6797.14413.1|Name=mRNA_H-elongata_contig6797.14413.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig6797:5425..6084+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6797:5425..6084+ >mRNA_H-elongata_contig6797.14413.1 ID=mRNA_H-elongata_contig6797.14413.1|Name=mRNA_H-elongata_contig6797.14413.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig6797:5425..6084+ (Himanthalia elongata Himel1 dioecious)back to top |