mRNA_H-elongata_contig67967.14412.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67967.14412.1
Unique NamemRNA_H-elongata_contig67967.14412.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Match: A0A813KA38_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KA38_POLGL)

HSP 1 Score: 132 bits (332), Expect = 3.320e-37
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    1 QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAELTE 216
            QG+DAVWPGWGHASENP+LPT+L + GI FIGPTAPVMSVLGDK+AANILAQTA VPSIPWSGDGL AEL E
Sbjct:   66 QGVDAVWPGWGHASENPKLPTKLKSMGITFIGPTAPVMSVLGDKVAANILAQTAGVPSIPWSGDGLVAELNE 137
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BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Match: D7G4Z4_ECTSI (Acetyl-CoA carboxylase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z4_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 3.850e-37
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAELTE 216
            QG+DAVWPGWGHASENP+LPTRL   GIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEA+LT+
Sbjct:  156 QGVDAVWPGWGHASENPQLPTRLTDNGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAKLTD 227
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BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Match: A0A6H5L0S0_9PHAE (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S0_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.190e-37
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAELTE 216
            QG+DAVWPGWGHASENP+LPTRL   GIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEA+LT+
Sbjct:  156 QGVDAVWPGWGHASENPQLPTRLTDNGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAKLTD 227
[Close]
BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Match: A0A1Z9KPD5_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1Z9KPD5_9BACT)

HSP 1 Score: 135 bits (341), Expect = 8.160e-37
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAELTE 216
            +G+DAVWPGWGHASENP+LPT L   GI+FIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEA LTE
Sbjct:   73 EGIDAVWPGWGHASENPKLPTALKERGIQFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAILTE 144
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BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Match: A0A7S0KUP4_MICPS (Acetyl-CoA carboxylase n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KUP4_MICPS)

HSP 1 Score: 137 bits (346), Expect = 3.690e-36
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAELTE 216
            +G+DAVWPGWGHASENP+LPT L   GI+FIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEA+LTE
Sbjct:  190 EGIDAVWPGWGHASENPKLPTALKERGIQFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEADLTE 261
[Close]
BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Match: A0A813EQ02_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EQ02_POLGL)

HSP 1 Score: 132 bits (332), Expect = 4.910e-36
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    1 QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAELTE 216
            QG+DAVWPGWGHASENP+LPT+L + GI FIGPTAPVMSVLGDK+AANILAQTA VPSIPWSGDGL AEL E
Sbjct:  227 QGVDAVWPGWGHASENPKLPTKLKSMGITFIGPTAPVMSVLGDKVAANILAQTAGVPSIPWSGDGLVAELNE 298
[Close]
BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Match: C1ML75_MICPC (Acetyl-CoA carboxylase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1ML75_MICPC)

HSP 1 Score: 137 bits (344), Expect = 6.860e-36
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAELTE 216
            +G+DAVWPGWGHASENP+LPT L   GI+FIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSG+GLEAELTE
Sbjct:  192 EGVDAVWPGWGHASENPKLPTSLKERGIQFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGEGLEAELTE 263
[Close]
BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Match: A4RRC3_OSTLU (Acetyl-CoA carboxylase n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RRC3_OSTLU)

HSP 1 Score: 136 bits (342), Expect = 1.280e-35
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAELTE 216
            +G+DAVWPGWGHASENP+LPT L A G++FIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGL AELTE
Sbjct:   73 EGVDAVWPGWGHASENPKLPTSLKAIGVQFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLVAELTE 144
[Close]
BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Match: A0A090N2R3_OSTTA (Acetyl-CoA carboxylase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N2R3_OSTTA)

HSP 1 Score: 134 bits (337), Expect = 6.040e-35
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 1 
Query:    1 QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAELT 213
            +G+DAVWPGWGHASENP+LPT L A G++FIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGL AELT
Sbjct:  172 EGVDAVWPGWGHASENPKLPTALKAIGVQFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLVAELT 242
[Close]
BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Match: A0A830I095_9CHLO (Acetyl-CoA carboxylase n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830I095_9CHLO)

HSP 1 Score: 134 bits (337), Expect = 6.040e-35
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    1 QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLEAELTE 216
            +G DAVWPGWGHASENP+LP  L A GI+FIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGL A+LTE
Sbjct:  163 EGCDAVWPGWGHASENPKLPATLKARGIQFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSGDGLTADLTE 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67967.14412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813KA38_POLGL3.320e-3784.72Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
D7G4Z4_ECTSI3.850e-3790.28Acetyl-CoA carboxylase, partial n=1 Tax=Ectocarpus... [more]
A0A6H5L0S0_9PHAE4.190e-3790.28Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP... [more]
A0A1Z9KPD5_9BACT8.160e-3787.50Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A7S0KUP4_MICPS3.690e-3687.50Acetyl-CoA carboxylase n=2 Tax=Micromonas TaxID=38... [more]
A0A813EQ02_POLGL4.910e-3684.72Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
C1ML75_MICPC6.860e-3687.50Acetyl-CoA carboxylase n=2 Tax=Micromonas pusilla ... [more]
A4RRC3_OSTLU1.280e-3587.50Acetyl-CoA carboxylase n=1 Tax=Ostreococcus lucima... [more]
A0A090N2R3_OSTTA6.040e-3587.32Acetyl-CoA carboxylase n=2 Tax=Ostreococcus tauri ... [more]
A0A830I095_9CHLO6.040e-3586.11Acetyl-CoA carboxylase n=2 Tax=Pycnococcus provaso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67967contigH-elongata_contig67967:1178..1393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score139.8
Seed ortholog evalue4.9e-31
Seed eggNOG ortholog296587.XP_002507094.1
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K01946,ko:K11262
KEGG ReactionR00742,R04385,R04386
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko01212,ko04152,ko04910,ko04920,ko04922,ko04931,map00061,map00254,map00620,map00640,map01100,map01110,map01212,map04152,map04910,map04920,map04922,map04931
KEGG ModuleM00082
EggNOG free text desc.acetyl-coa carboxylase
EggNOG OGs37HYK@33090,COG0439@1,KOG0368@2759
EC2.1.3.15,6.3.4.14,6.4.1.2
COG Functional cat.I
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.778859-CDS-H-elongata_contig67967:1177..13931622931071.778859-CDS-H-elongata_contig67967:1177..1393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67967 1178..1393 +
1691679686.1274593-CDS-H-elongata_contig67967:1177..13931691679686.1274593-CDS-H-elongata_contig67967:1177..1393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67967 1178..1393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67967.14412.1prot_H-elongata_contig67967.14412.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67967 1178..1393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67967.14412.1

>prot_H-elongata_contig67967.14412.1 ID=prot_H-elongata_contig67967.14412.1|Name=mRNA_H-elongata_contig67967.14412.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
QGLDAVWPGWGHASENPRLPTRLAAEGIKFIGPTAPVMSVLGDKIAANIL
AQTAKVPSIPWSGDGLEAELTE
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mRNA from alignment at H-elongata_contig67967:1178..1393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67967.14412.1 ID=mRNA_H-elongata_contig67967.14412.1|Name=mRNA_H-elongata_contig67967.14412.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig67967:1178..1393+ (Himanthalia elongata Himel1 dioecious)
CAGGGGTTGGATGCGGTGTGGCCCGGATGGGGACACGCTTCGGAGAACCC
TAGACTGCCCACTCGCCTCGCAGCGGAGGGAATAAAGTTCATCGGCCCCA
CCGCGCCGGTAATGTCAGTTCTCGGGGACAAGATTGCCGCCAACATCCTG
GCGCAGACGGCAAAGGTGCCCTCCATCCCCTGGAGTGGAGACGGTCTTGA
GGCTGAGCTCACGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig67967:1178..1393+

>mRNA_H-elongata_contig67967.14412.1 ID=mRNA_H-elongata_contig67967.14412.1|Name=mRNA_H-elongata_contig67967.14412.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig67967:1178..1393+ (Himanthalia elongata Himel1 dioecious)
CAGGGGTTGGATGCGGTGTGGCCCGGATGGGGACACGCTTCGGAGAACCC
TAGACTGCCCACTCGCCTCGCAGCGGAGGGAATAAAGTTCATCGGCCCCA
CCGCGCCGGTAATGTCAGTTCTCGGGGACAAGATTGCCGCCAACATCCTG
GCGCAGACGGCAAAGGTGCCCTCCATCCCCTGGAGTGGAGACGGTCTTGA
GGCTGAGCTCACGGAGCAGGGGTTGGATGCGGTGTGGCCCGGATGGGGAC
ACGCTTCGGAGAACCCTAGACTGCCCACTCGCCTCGCAGCGGAGGGAATA
AAGTTCATCGGCCCCACCGCGCCGGTAATGTCAGTTCTCGGGGACAAGAT
TGCCGCCAACATCCTGGCGCAGACGGCAAAGGTGCCCTCCATCCCCTGGA
GTGGAGACGGTCTTGAGGCTGAGCTCACGGAG
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