mRNA_H-elongata_contig67962.14411.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67962.14411.1
Unique NamemRNA_H-elongata_contig67962.14411.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67962.14411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67962contigH-elongata_contig67962:371..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog42099.EPrPV00000014808
Preferred nameMIOS
KEGG koko:K20407
KEGG Pathwayko04150,map04150
GOsGO:0000003,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001674,GO:0001709,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005773,GO:0005774,GO:0005776,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008361,GO:0009267,GO:0009605,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010506,GO:0010507,GO:0010564,GO:0010646,GO:0010647,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019898,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030054,GO:0030154,GO:0030716,GO:0031090,GO:0031312,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031503,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0034198,GO:0034613,GO:0034629,GO:0034641,GO:0035859,GO:0036211,GO:0040020,GO:0042594,GO:0043073,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044754,GO:0045165,GO:0045793,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051445,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0061630,GO:0061659,GO:0061700,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070727,GO:0071496,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:0097042,GO:0098588,GO:0098805,GO:0098852,GO:0140096,GO:1901360,GO:1901564,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990928,GO:2000241
EggNOG free text desc.WD repeat-containing protein mio. Source PGD
EggNOG OGs1MAYX@121069,KOG1008@1,KOG1008@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_002770.1
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.7175863-CDS-H-elongata_contig67962:370..5411622931071.7175863-CDS-H-elongata_contig67962:370..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67962 371..541 -
1691679686.1107461-CDS-H-elongata_contig67962:370..5411691679686.1107461-CDS-H-elongata_contig67962:370..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67962 371..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67962.14411.1prot_H-elongata_contig67962.14411.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67962 371..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67962.14411.1

>prot_H-elongata_contig67962.14411.1 ID=prot_H-elongata_contig67962.14411.1|Name=mRNA_H-elongata_contig67962.14411.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
RRFSVCCRCWHAGHAHHLSYWFENHDTCGVNGCGCKCMSLDSPVVYHRSP
SSSIRK*
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mRNA from alignment at H-elongata_contig67962:371..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67962.14411.1 ID=mRNA_H-elongata_contig67962.14411.1|Name=mRNA_H-elongata_contig67962.14411.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig67962:371..541- (Himanthalia elongata Himel1 dioecious)
CGCCGCTTCTCCGTGTGCTGCAGGTGCTGGCACGCGGGCCATGCCCACCA
CTTGAGCTACTGGTTCGAGAACCACGACACCTGCGGAGTCAACGGCTGTG
GCTGTAAATGCATGTCTCTCGATTCACCCGTCGTATACCACCGCTCCCCT
TCCTCCTCCATCAGGAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig67962:371..541-

>mRNA_H-elongata_contig67962.14411.1 ID=mRNA_H-elongata_contig67962.14411.1|Name=mRNA_H-elongata_contig67962.14411.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig67962:371..541- (Himanthalia elongata Himel1 dioecious)
CGCCGCTTCTCCGTGTGCTGCAGGTGCTGGCACGCGGGCCATGCCCACCA
CTTGAGCTACTGGTTCGAGAACCACGACACCTGCGGAGTCAACGGCTGTG
GCTGTAAATGCATGTCTCTCGATTCACCCGTCGTATACCACCGCTCCCCT
TCCTCCTCCATCAGGAAATGACGCCGCTTCTCCGTGTGCTGCAGGTGCTG
GCACGCGGGCCATGCCCACCACTTGAGCTACTGGTTCGAGAACCACGACA
CCTGCGGAGTCAACGGCTGTGGCTGTAAATGCATGTCTCTCGATTCACCC
GTCGTATACCACCGCTCCCCTTCCTCCTCCATCAGGAAATGA
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