mRNA_H-elongata_contig67952.14409.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67952.14409.1
Unique NamemRNA_H-elongata_contig67952.14409.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: D8LCZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ3_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.840e-51
Identity = 88/98 (89.80%), Postives = 95/98 (96.94%), Query Frame = 1
Query:    1 DLVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
            DLV+++HA +GEGAILIFLSGWEEISAVHDKLE LP+AR WRLYALHSQMPT+QQRDVFLRPPRG+RKIVIATNIAESSITIDDVVYVIDGGKHKEKS
Sbjct:  431 DLVRHVHAYEGEGAILIFLSGWEEISAVHDKLEALPEARAWRLYALHSQMPTSQQRDVFLRPPRGVRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 528          
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A4D9CM44_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM44_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.420e-42
Identity = 67/97 (69.07%), Postives = 84/97 (86.60%), Query Frame = 1
Query:    4 LVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
            LV+ I A +G GAIL+FL GWE+I+ VH+ L+ LPQ+R+WRLY LHSQ+P +QQR++F  PP G+RKIV+ATNIAESSITIDDVVYV+DGGKHKEK+
Sbjct:   22 LVKKIDAEEGSGAILVFLPGWEDITKVHETLQRLPQSRRWRLYPLHSQLPMDQQREIFSPPPPGLRKIVLATNIAESSITIDDVVYVLDGGKHKEKT 118          
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: I2CQV2_NANGC (ATP-dependent RNA helicase DHX36 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CQV2_NANGC)

HSP 1 Score: 143 bits (361), Expect = 9.800e-38
Identity = 67/97 (69.07%), Postives = 84/97 (86.60%), Query Frame = 1
Query:    4 LVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
            LV+ I A +G GAIL+FL GWE+I+ VH+ L+ LPQ+R+WRLY LHSQ+P +QQR++F  PP G+RKIV+ATNIAESSITIDDVVYV+DGGKHKEK+
Sbjct:   49 LVKKIDAEEGPGAILVFLPGWEDITKVHETLQRLPQSRRWRLYPLHSQLPMDQQREIFSPPPPGLRKIVLATNIAESSITIDDVVYVLDGGKHKEKT 145          
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A7R9YF83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF83_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.830e-30
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 DLVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMPTNQQRDVFLRP--PRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
             LV++IH   GEGAILIF+SGW  I A+  KL  LP+A   ++Y LH  MP +QQR +F +P  PR +RK+V++TNIAESSITI+DVVYVID GK KEK+
Sbjct:   29 SLVRHIHREMGEGAILIFMSGWGPIDALCSKLRKLPEAASLKIYQLHGSMPMSQQRGIFEKPADPR-VRKVVVSTNIAESSITIEDVVYVIDFGKRKEKT 127          
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A7S0MWB1_9CHLO (RNA helicase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MWB1_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 4.900e-30
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    4 LVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
            LVQ I   +G+GA+LIFL GWE+IS V D L+ L     W LY LH  +PT+QQR +F RPP G+RKIV+ATNIAESSITIDDV+YVID GKHKEK+
Sbjct:   62 LVQMIDK-EGDGAVLIFLPGWEDISKVVDSLKSLG-CPHWLLYPLHGSLPTSQQRGIFDRPPPGVRKIVVATNIAESSITIDDVIYVIDCGKHKEKT 156          
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A7C9ACT9_OPUST (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ACT9_OPUST)

HSP 1 Score: 112 bits (281), Expect = 5.480e-30
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1
Query:    7 VQYIHACQGEGAILIFLSGWEEISAVHDKLE---MLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
            ++YI   +GEGAIL+FL+GW+EIS +HDK++    L  +R++ +  LH  MPT  QR++F R P  +RKIV+ATNIAESSITIDDVVYV+D GK KE S
Sbjct:   20 IEYICLNEGEGAILVFLTGWDEISKLHDKIKANKFLGDSRKFLVLPLHGSMPTVNQREIFDRSPASMRKIVLATNIAESSITIDDVVYVVDCGKAKETS 118          
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A7C9A9S9_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9A9S9_OPUST)

HSP 1 Score: 115 bits (289), Expect = 1.140e-29
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    7 VQYIHACQGEGAILIFLSGWEEISAVHDKLE---MLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
            ++YI   +GEGAIL+FL+GW+EIS +HDK++    L  +R++ +  LH  MPT  QR++F RPP  +RKIV+ATNIAESSITIDDVVYV+D GK KE S
Sbjct:  159 IEYICLNEGEGAILVFLTGWDEISKLHDKIKANKFLGDSRKFLVLPLHGSMPTVNQREIFDRPPASMRKIVLATNIAESSITIDDVVYVVDCGKAKETS 257          
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: A0A7S3FTI7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FTI7_9CHLO)

HSP 1 Score: 113 bits (283), Expect = 1.410e-29
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 DLVQYI--HAC--QGEGAILIFLSGWEEISAVHDKLE---MLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
            DL++++  H C  +GEGA+L+FL+GW++IS +HD+L+   +L    Q+R+  LH  MPT  Q+ +F  PP G+RKIV++TNIAE+SITIDD+V+V+D GK KEK+
Sbjct:   51 DLIEHVIEHICVTEGEGAMLVFLTGWDDISKLHDQLQRNRILSNKNQYRIIPLHGSMPTANQQKIFANPPPGVRKIVLSTNIAETSITIDDIVFVVDCGKAKEKT 155          
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: UPI00077A3C86 (ATP-dependent RNA helicase DHX36-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A3C86)

HSP 1 Score: 117 bits (293), Expect = 1.510e-28
Identity = 59/99 (59.60%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    4 LVQYIHACQGEGAILIFLSGWEEISAVHDKL--EMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
            +V +I     EGAIL+FL GW++IS VHDKL  E +  + ++R+  LHS MP++ Q++VF RPP G+RKIVIATNIAE+SITIDDVV+V+DGGK KEK+
Sbjct:  277 VVTHISLHMEEGAILVFLPGWDDISKVHDKLKEEKMFSSDKFRIIPLHSMMPSSNQKEVFDRPPEGVRKIVIATNIAETSITIDDVVFVVDGGKVKEKT 375          
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Match: UPI001CF2D9CA (ATP-dependent DNA/RNA helicase DHX36-like isoform X2 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF2D9CA)

HSP 1 Score: 117 bits (292), Expect = 2.100e-28
Identity = 59/99 (59.60%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    4 LVQYIHACQGEGAILIFLSGWEEISAVHDKL--EMLPQARQWRLYALHSQMPTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS 294
            +V +I     EGAIL+FL GW++IS VHDKL  E +  + ++R+  LHS MP+  Q++VF RPP G+RKIVIATNIAE+SITIDDVV+V+DGGK KEK+
Sbjct:  546 VVTHISLHMEEGAILVFLPGWDDISKVHDKLKEEKMFSSDKFRIIPLHSMMPSTNQKEVFDRPPEGVRKIVIATNIAETSITIDDVVFVVDGGKVKEKT 644          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67952.14409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCZ3_ECTSI1.840e-5189.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CM44_9STRA3.420e-4269.07Helicase C-terminal domain-containing protein n=1 ... [more]
I2CQV2_NANGC9.800e-3869.07ATP-dependent RNA helicase DHX36 n=2 Tax=Nannochlo... [more]
A0A7R9YF83_9STRA3.830e-3059.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S0MWB1_9CHLO4.900e-3064.95RNA helicase n=1 Tax=Pyramimonas obovata TaxID=141... [more]
A0A7C9ACT9_OPUST5.480e-3057.58Helicase C-terminal domain-containing protein (Fra... [more]
A0A7C9A9S9_OPUST1.140e-2958.59Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A7S3FTI7_9CHLO1.410e-2951.43Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
UPI00077A3C861.510e-2859.60ATP-dependent RNA helicase DHX36-like n=1 Tax=Acro... [more]
UPI001CF2D9CA2.100e-2859.60ATP-dependent DNA/RNA helicase DHX36-like isoform ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67952contigH-elongata_contig67952:395..1844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue9.1e-44
Seed eggNOG ortholog2880.D8LCZ3
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0920@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size296
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67952.14409.1prot_H-elongata_contig67952.14409.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67952 396..1844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.5629218-CDS-H-elongata_contig67952:395..4851622931071.5629218-CDS-H-elongata_contig67952:395..485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67952 396..485 -
1691679686.0659719-CDS-H-elongata_contig67952:395..4851691679686.0659719-CDS-H-elongata_contig67952:395..485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67952 396..485 -
1622931071.5773363-CDS-H-elongata_contig67952:831..9541622931071.5773363-CDS-H-elongata_contig67952:831..954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67952 832..954 -
1691679686.077722-CDS-H-elongata_contig67952:831..9541691679686.077722-CDS-H-elongata_contig67952:831..954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67952 832..954 -
1622931071.5900538-CDS-H-elongata_contig67952:1763..18441622931071.5900538-CDS-H-elongata_contig67952:1763..1844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67952 1764..1844 -
1691679686.087-CDS-H-elongata_contig67952:1763..18441691679686.087-CDS-H-elongata_contig67952:1763..1844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67952 1764..1844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67952.14409.1

>prot_H-elongata_contig67952.14409.1 ID=prot_H-elongata_contig67952.14409.1|Name=mRNA_H-elongata_contig67952.14409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
DLVQYIHACQGEGAILIFLSGWEEISAVHDKLEMLPQARQWRLYALHSQM
PTNQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKS
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mRNA from alignment at H-elongata_contig67952:395..1844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67952.14409.1 ID=mRNA_H-elongata_contig67952.14409.1|Name=mRNA_H-elongata_contig67952.14409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1450bp|location=Sequence derived from alignment at H-elongata_contig67952:395..1844- (Himanthalia elongata Himel1 dioecious)
GACCTTGTTCAGTATATACACGCCTGCCAGGGGGAGGGGGCCATCCTCAT TTTTTTGTCGGGCTGGGAAGAGATAAGCGCGGTGAGTTAGGGCGTCTTGC CGCGTGGTGGGGGTCATAGGGTTCACCAGGCAGCTGGATAGAGCCACGGC TAGTTGTACAGTAGATCGGGAGCGTGTCCATAGCTTTCTTGGTGGGATGG AAATACGTTTTGAGGTAGGGCGCGTGTTGTTTTGGTGTGTGTTTTTTTAG CTGGAGCTGTCATGTCGTGTCGAAGTAGAGTATCTTAGAATATTTGATAA ACAATGTTAATTGTACGGGACAATAAGAGTTTCACCGACATTATTAACCG TTGACCCGATGGAGTTACAACCGGGGAGCACGAATAATCACATATATGAC GATTTTGTTCTTAAATGTAGTAATGTCCACATTCGGACCTGACTATAGTT GATAGTTGGTCCCCTGGACTACACCTCTCACATGGTGCTAGGAAGGCGTG ATTGTTAGAAGGGTTTTAATGGGTTATGTTTTTTAGTTTAAAAAAAAACT CTGGGAGAGAGATTCGCCACAGTGTGTTCGTAAATAATGTCTAAAAGGAT CACCAATAACCTATCCTGTTGACACTTCCGTCGAGGAAGTAGATATGGTA ACAGAGCTATTAGTCTCCAAGTATCCCATCCCATCTCGTGTGTTGGCATC TTTCCCATCCCGTGCGCGTCAATCGTCAAGTATGCTGAAGAAGCGGAGTC CACGGCTATCTTGGTTTTGGGCTGGCGTACCTTCGGGTGCATATTCTTGA GAGCCCGGGGTACTCCGCGAGCCGTTTACCCTCTTCTCGAGAAGTTAACC TACTTTTATATCTTTCTCCCGTGGCCCGAACTTGACTCAGGTGCACGACA AGCTGGAGATGCTTCCGCAGGCTCGTCAGTGGCGCCTGTACGCCCTCCAC AGCCAGATGCCAACCAATCAGCAGCGCGACGTGTTCCTTAGGCCACCCAG AGGCATTAGAAAAGTGAGCTTCCAGAAGCAGTATTTATTTTTTACTATGT TGTATAGTGTGCGTCTGTGTGTTTGAGTCGATCTTATCACAATAAATGCG TGATTAAGGTTCAGTGAGAGGTGTGTCTTCTCTGACCTCGATCCGGATTT AAAATACCATGCGTACCTCATCAAAGGCAGATGTTGTACGGCGCCGCCGC CCGCTTCCCCCGAAACGCGTTCAGCGGGTATATAACGTTAGAATCTAACT ATTCGAATCATGTAGAAAAATATTACCGGCCCGGCCCAGCCCCCCCCCCC TCCGTCGGTCGGTCGCTCGCTTCCGCTATTTCACCTTCACCTCCGCGCGC GTTTCGCAGATTGTGATCGCCACCAACATCGCCGAGTCTTCCATCACCAT CGATGACGTGGTGTACGTGATCGACGGAGGGAAGCATAAGGAGAAGAGCT
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Coding sequence (CDS) from alignment at H-elongata_contig67952:395..1844-

>mRNA_H-elongata_contig67952.14409.1 ID=mRNA_H-elongata_contig67952.14409.1|Name=mRNA_H-elongata_contig67952.14409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig67952:395..1844- (Himanthalia elongata Himel1 dioecious)
GACCTTGTTCAGTATATACACGCCTGCCAGGGGGAGGGGGCCATCCTCAT
TTTTTTGTCGGGCTGGGAAGAGATAAGCGCGGACCTTGTTCAGTATATAC
ACGCCTGCCAGGGGGAGGGGGCCATCCTCATTTTTTTGTCGGGCTGGGAA
GAGATAAGCGCGGTGCACGACAAGCTGGAGATGCTTCCGCAGGCTCGTCA
GTGGCGCCTGTACGCCCTCCACAGCCAGATGCCAACCAATCAGCAGCGCG
ACGTGTTCCTTAGGCCACCCAGAGGCATTAGAAAAGTGCACGACAAGCTG
GAGATGCTTCCGCAGGCTCGTCAGTGGCGCCTGTACGCCCTCCACAGCCA
GATGCCAACCAATCAGCAGCGCGACGTGTTCCTTAGGCCACCCAGAGGCA
TTAGAAAAATTGTGATCGCCACCAACATCGCCGAGTCTTCCATCACCATC
GATGACGTGGTGTACGTGATCGACGGAGGGAAGCATAAGGAGAAGAGCAT
TGTGATCGCCACCAACATCGCCGAGTCTTCCATCACCATCGATGACGTGG
TGTACGTGATCGACGGAGGGAAGCATAAGGAGAAGAGC
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