mRNA_H-elongata_contig67947.14408.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67947.14408.1
Unique NamemRNA_H-elongata_contig67947.14408.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Match: D8LMH5_ECTSI (RmlD_sub_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMH5_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.300e-58
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 1 
Query:   22 EYELREIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVIGTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIGGKGFKEEDVPNFTGSFYSDTKGMVE 327
            E  L+E+E IKPTHVLNAAG+TGRPNVDWCESHRPETIRANVIGTLNLAD+CSS+ IHCTIYATGCIYEYD EH IGGKGF E D PNF  SFYSDTKGMVE
Sbjct:   41 ESVLKELETIKPTHVLNAAGVTGRPNVDWCESHRPETIRANVIGTLNLADLCSSKSIHCTIYATGCIYEYDAEHTIGGKGFLESDAPNFKASFYSDTKGMVE 142
[Close]
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Match: A0A835Z517_9STRA (RmlD_sub_bind domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z517_9STRA)

HSP 1 Score: 187 bits (475), Expect = 5.560e-57
Identity = 83/103 (80.58%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:   22 EYELREIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVIGTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIGGKGFKEEDVPNFTGSFYSDTKGMVEK 330
            E  +REI+ +KPTHVLNAAG+TGRPNVDWC+ H+PETIRANVIGTLNLADVCSSRGIHCT+YATGCI+EYD EH IGGKGF E+D+PNF GSFYS TKGMVE+
Sbjct:   44 ESMIREIDELKPTHVLNAAGVTGRPNVDWCDLHKPETIRANVIGTLNLADVCSSRGIHCTMYATGCIFEYDAEHTIGGKGFVEDDLPNFDGSFYSLTKGMVER 146
[Close]
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Match: A0A6U1NBW8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NBW8_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.350e-51
Identity = 79/105 (75.24%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:   13 QPPEYELREIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVIGTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIGGKGFKEEDVPNFTGSFYSDTKGMVE 327
            Q  E+  RE++ IKPT VL AAG+TGRPNVDWCESH+ ETIR NVIG LN+ADVC+SR IHCT+YATGCI+EYD EH IGGKGF EED PNF GSFYS TKGMVE
Sbjct:   41 QNREHLERELDEIKPTRVLCAAGVTGRPNVDWCESHKLETIRTNVIGALNIADVCNSRNIHCTLYATGCIFEYDAEHTIGGKGFTEEDKPNFDGSFYSATKGMVE 145
[Close]
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Match: A0A448YU74_9STRA (RmlD_sub_bind domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU74_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.640e-50
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:   13 QPPEYELREIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVIGTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIG-GKGFKEEDVPNFTGSFYSDTKGMVEKARVNSP 348
            Q  E   +E++ +KPTHV N+AG+TGRPN+DWCE+H+PETIR NVIGTLNLAD+C  RGIHCT+YATGCI+ YD  HP+G G GFKEED PNF GSFYS+TKG +E    N P
Sbjct:   46 QNREAVAKELDEVKPTHVFNSAGITGRPNIDWCETHKPETIRTNVIGTLNLADLCLERGIHCTVYATGCIFVYDEAHPLGSGIGFKEEDTPNFDGSFYSETKGYMEPMLRNYP 158
[Close]
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Match: X0BFW6_FUSOX (dTDP-glucose 4,6-dehydratase n=5 Tax=Fusarium TaxID=5506 RepID=X0BFW6_FUSOX)

HSP 1 Score: 168 bits (425), Expect = 1.630e-49
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:   34 REIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVIGTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIGGKGFKEEDVPNFTGSFYSDTKGMVEKA 333
            +E+E IKPTHVLNAAG TGRPNVDWCE ++ +T+R+NVIGTL LAD C+ RGIHCTI+ATGCIY+Y+  HPIGG GFKEED PNFT SFYS TKG VE A
Sbjct:   47 QELEKIKPTHVLNAAGCTGRPNVDWCEDNKAQTVRSNVIGTLTLADQCAQRGIHCTIFATGCIYQYNEAHPIGGPGFKEEDTPNFTRSFYSMTKGHVEPA 146
[Close]
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Match: A0A1Y2X5I5_9PEZI (RmlD_sub_bind domain-containing protein n=4 Tax=Daldinia TaxID=42360 RepID=A0A1Y2X5I5_9PEZI)

HSP 1 Score: 167 bits (423), Expect = 3.270e-49
Identity = 73/98 (74.49%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:   37 EIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVIGTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIGGKGFKEEDVPNFTGSFYSDTKGMVEK 330
            E++AIKPTHVLN AG TGRPNVDWCE H+ +TIR+NVIGTLNLAD C   GIHCT++ATGCIY YD  HPIGG GFKE D  NFTGSFYS+TKG VE+
Sbjct:   52 ELDAIKPTHVLNCAGCTGRPNVDWCEDHKEDTIRSNVIGTLNLADCCFVAGIHCTVFATGCIYHYDDAHPIGGPGFKETDPTNFTGSFYSETKGHVEE 149
[Close]
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Match: A0A7R9WWB4_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWB4_9STRA)

HSP 1 Score: 167 bits (423), Expect = 4.600e-49
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:   13 QPPEYELREIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVIGTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIG-GKGFKEEDVPNFTGSFYSDTKGMVEKARVNSP 348
            Q  E   +E++ IKPTHVLNAAG+TGRPN+DWCE H+PET+R NVIGTLNLAD+C  R IHCT+YATGCI+ YD +HP G G GF EED PNF GSFYS+TKG +E    N P
Sbjct:   42 QNRESVAKELDEIKPTHVLNAAGITGRPNIDWCEDHKPETMRTNVIGTLNLADLCYERNIHCTVYATGCIFVYDEKHPEGSGIGFTEEDTPNFDGSFYSETKGYMEPMLKNYP 154
[Close]
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Match: A0A812VJG1_SYMMI (NRS/ER protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VJG1_SYMMI)

HSP 1 Score: 162 bits (410), Expect = 5.310e-49
Identity = 70/103 (67.96%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:   22 EYELREIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVIGTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIGGKGFKEEDVPNFTGSFYSDTKGMVEK 330
            E  LREIE  +PTH+LNAAG+TGRPNVDWCE HR ETIR+NVIG+L +AD+C  + IH T++ATGCI+EYD  HPIGG GF E+D PNF GS+YS TK MVE+
Sbjct:   44 ESVLREIEQYQPTHILNAAGVTGRPNVDWCEDHRAETIRSNVIGSLMIADICDEKNIHHTLFATGCIFEYDAAHPIGGPGFTEDDTPNFHGSYYSHTKAMVEE 146
[Close]
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Match: X0I1E4_FUSOX (dTDP-glucose 4,6-dehydratase n=4 Tax=Fusarium TaxID=5506 RepID=X0I1E4_FUSOX)

HSP 1 Score: 166 bits (421), Expect = 5.870e-49
Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:   34 REIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVIGTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIGGKGFKEEDVPNFTGSFYSDTKGMVE 327
            +E++ I+PTHVLNAAG TGRPNVDWCE ++ +T+R+NVIGTL LAD C+  GIHCTI+ATGCIY+YD  HPIGG GFKEED PNFTGSFYS TKG VE
Sbjct:   47 KELQKIQPTHVLNAAGCTGRPNVDWCEDNKSQTVRSNVIGTLTLADRCAQLGIHCTIFATGCIYQYDETHPIGGPGFKEEDAPNFTGSFYSMTKGHVE 144
[Close]
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Match: A0A699YME3_HAELA (Epimerase domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YME3_HAELA)

HSP 1 Score: 168 bits (425), Expect = 7.270e-49
Identity = 77/106 (72.64%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:   31 LREIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVIGTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIGGKGFKEEDVPNFTGSFYSDTKGMVEKARVNSP 348
            L EIE +KPTHVLNAAGMTGRPNVDWCE H+ ETIRANVIG LNLADVC+ +GIH T Y TGCI+ YD E  IGGKGFKE D PNFTGS+YS TK MVE      P
Sbjct:   66 LAEIERVKPTHVLNAAGMTGRPNVDWCEDHKVETIRANVIGCLNLADVCTQQGIHMTYYGTGCIFHYDDEFKIGGKGFKESDKPNFTGSYYSYTKAMVESLLKEYP 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67947.14408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMH5_ECTSI2.300e-5884.31RmlD_sub_bind domain-containing protein n=2 Tax=Ec... [more]
A0A835Z517_9STRA5.560e-5780.58RmlD_sub_bind domain-containing protein n=1 Tax=Tr... [more]
A0A6U1NBW8_9STRA2.350e-5175.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A448YU74_9STRA1.640e-5066.37RmlD_sub_bind domain-containing protein n=1 Tax=Ps... [more]
X0BFW6_FUSOX1.630e-4974.00dTDP-glucose 4,6-dehydratase n=5 Tax=Fusarium TaxI... [more]
A0A1Y2X5I5_9PEZI3.270e-4974.49RmlD_sub_bind domain-containing protein n=4 Tax=Da... [more]
A0A7R9WWB4_9STRA4.600e-4966.37Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A812VJG1_SYMMI5.310e-4967.96NRS/ER protein n=1 Tax=Symbiodinium microadriaticu... [more]
X0I1E4_FUSOX5.870e-4973.47dTDP-glucose 4,6-dehydratase n=4 Tax=Fusarium TaxI... [more]
A0A699YME3_HAELA7.270e-4972.64Epimerase domain-containing protein n=1 Tax=Haemat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67947contigH-elongata_contig67947:2023..3115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue1.5e-45
Seed eggNOG ortholog2880.D8LMH5
Preferred nameGAL102
KEGG rclassRC00182,RC00402,RC01014,RC01531
KEGG koko:K01710,ko:K12450,ko:K12451
KEGG ReactionR00293,R06513,R08704,R08705,R08935
KEGG Pathwayko00520,ko00521,ko00523,ko00525,ko01055,ko01130,map00520,map00521,map00523,map00525,map01055,map01130
KEGG ModuleM00793
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0006810,GO:0007275,GO:0008150,GO:0008152,GO:0008460,GO:0008830,GO:0008831,GO:0009058,GO:0009225,GO:0009226,GO:0009506,GO:0009791,GO:0009812,GO:0009813,GO:0009914,GO:0009966,GO:0009987,GO:0010154,GO:0010191,GO:0010192,GO:0010214,GO:0010253,GO:0010280,GO:0010315,GO:0010489,GO:0010490,GO:0010646,GO:0010817,GO:0010928,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0016857,GO:0018130,GO:0019305,GO:0019438,GO:0022414,GO:0023051,GO:0030054,GO:0030154,GO:0032501,GO:0032502,GO:0033478,GO:0034641,GO:0034654,GO:0042127,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046383,GO:0046483,GO:0048046,GO:0048316,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050377,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051552,GO:0051553,GO:0051554,GO:0051555,GO:0055044,GO:0055086,GO:0055114,GO:0060918,GO:0061458,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.dTDP-glucose 4,6-dehydratase activity
EggNOG OGsCOG1088@1,KOG0747@2759
EC4.2.1.46,4.2.1.76
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRmlD-like substrate binding domain
Ec32 orthologEc-05_002790.1
Exons3
Model size351
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67947.14408.1prot_H-elongata_contig67947.14408.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67947 2023..3115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.4835017-CDS-H-elongata_contig67947:2022..21061622931071.4835017-CDS-H-elongata_contig67947:2022..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67947 2023..2106 +
1691679686.0303147-CDS-H-elongata_contig67947:2022..21061691679686.0303147-CDS-H-elongata_contig67947:2022..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67947 2023..2106 +
1622931071.4993515-CDS-H-elongata_contig67947:2387..25181622931071.4993515-CDS-H-elongata_contig67947:2387..2518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67947 2388..2518 +
1691679686.0449512-CDS-H-elongata_contig67947:2387..25181691679686.0449512-CDS-H-elongata_contig67947:2387..2518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67947 2388..2518 +
1622931071.5145674-CDS-H-elongata_contig67947:2979..31151622931071.5145674-CDS-H-elongata_contig67947:2979..3115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67947 2980..3115 +
1691679686.0556035-CDS-H-elongata_contig67947:2979..31151691679686.0556035-CDS-H-elongata_contig67947:2979..3115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67947 2980..3115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67947.14408.1

>prot_H-elongata_contig67947.14408.1 ID=prot_H-elongata_contig67947.14408.1|Name=mRNA_H-elongata_contig67947.14408.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MNLFQPPEYELREIEAIKPTHVLNAAGMTGRPNVDWCESHRPETIRANVI
GTLNLADVCSSRGIHCTIYATGCIYEYDTEHPIGGKGFKEEDVPNFTGSF
YSDTKGMVEKARVNSP*
back to top

mRNA from alignment at H-elongata_contig67947:2023..3115+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67947.14408.1 ID=mRNA_H-elongata_contig67947.14408.1|Name=mRNA_H-elongata_contig67947.14408.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1093bp|location=Sequence derived from alignment at H-elongata_contig67947:2023..3115+ (Himanthalia elongata Himel1 dioecious)
ATGAACTTATTCCAACCCCCCGAATATGAACTCAGGGAAATCGAAGCCAT
CAAACCAACACACGTCCTCAACGCTGCCGGCATGGTGAGTTTCGAACATT
CGCTGTCCGTGCGTGGGCTGTTCTCAGGCTGCATCGATTGAAGGACTCGG
CAGTGGCGCTGGAAGAAAAGAACCGCAAATACTGTCGCGTACTGAAGGTT
CATGACTTTCTAGGTCTTCCTCTATGTGTGTCCGCTGCTAATGCCGTTTT
TATCTTTTTATTTTCAGTATTACGACCGTTCCACCAATGACACTGTTCGG
CAGCAGCAGCCGCAACAGCCTATCGCGATGAAGGGAAACCTCGACCCTCC
GTATTGCGTGCGCAGACTGGAAGACCCAACGTGGATTGGTGTGAGAGCCA
CCGCCCGGAGACTATCCGAGCTAACGTGATCGGAACCCTCAACCTGGCGG
ATGTTTGCTCCTCGAGGGGCATCCATTGCACCATTTACGCCACCGGGTAA
AGCAAAACGCCTCCATGGTAAAAAAACGCCTCCGTGGTGCAATAGTTTCA
GTTGTCGTTGGGTTTTGAACAACGTGTGTATGTGTGTGTATGTGTTTTAA
GGCTGACGTGCGTGCCTGGACGAATATTTTACGTTCCCGATGCTGTGTGT
CCTTGTACACTATACAACGAACCTCACCACCATGGGAAAAAATGACCCAA
CAGGCTTGATATCCGTAGGGGAGAGCGGCGGCGGTTTTTACTTCGTGTCT
CATGGGAAAGAAACTGTCAACAGCTTGAAGACGGCATTGAAGAAATAGGT
GTCGGTTGACAAGAGTTGAACCCCTTGACAGACGCGTCAAAGACACGTCC
CTACACTAAAACTAGTATATTTCCAAGAAGACGCCTTGACGCACCGCGGC
CGTGGGTTGAGCCGATTTTATTGTGTCGTTTGGTGTGAACTGGTGCTGCC
CTGGCAGGTGCATCTACGAGTACGATACGGAACACCCTATCGGGGGCAAA
GGTTTCAAGGAAGAGGACGTGCCAAATTTCACGGGTTCATTCTACTCGGA
CACCAAAGGCATGGTGGAGAAGGCAAGAGTCAATTCGCCGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig67947:2023..3115+

>mRNA_H-elongata_contig67947.14408.1 ID=mRNA_H-elongata_contig67947.14408.1|Name=mRNA_H-elongata_contig67947.14408.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig67947:2023..3115+ (Himanthalia elongata Himel1 dioecious)
ATGAACTTATTCCAACCCCCCGAATATGAACTCAGGGAAATCGAAGCCAT
CAAACCAACACACGTCCTCAACGCTGCCGGCATGATGAACTTATTCCAAC
CCCCCGAATATGAACTCAGGGAAATCGAAGCCATCAAACCAACACACGTC
CTCAACGCTGCCGGCATGACTGGAAGACCCAACGTGGATTGGTGTGAGAG
CCACCGCCCGGAGACTATCCGAGCTAACGTGATCGGAACCCTCAACCTGG
CGGATGTTTGCTCCTCGAGGGGCATCCATTGCACCATTTACGCCACCGGA
CTGGAAGACCCAACGTGGATTGGTGTGAGAGCCACCGCCCGGAGACTATC
CGAGCTAACGTGATCGGAACCCTCAACCTGGCGGATGTTTGCTCCTCGAG
GGGCATCCATTGCACCATTTACGCCACCGGGTGCATCTACGAGTACGATA
CGGAACACCCTATCGGGGGCAAAGGTTTCAAGGAAGAGGACGTGCCAAAT
TTCACGGGTTCATTCTACTCGGACACCAAAGGCATGGTGGAGAAGGCAAG
AGTCAATTCGCCGTAGGTGCATCTACGAGTACGATACGGAACACCCTATC
GGGGGCAAAGGTTTCAAGGAAGAGGACGTGCCAAATTTCACGGGTTCATT
CTACTCGGACACCAAAGGCATGGTGGAGAAGGCAAGAGTCAATTCGCCGT
AG
back to top