mRNA_H-elongata_contig67923.14403.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.230e-51 Identity = 131/258 (50.78%), Postives = 158/258 (61.24%), Query Frame = 1
Query: 1 EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAIYNNKDPAFAEYVRYTFTRFNLDYPYDVALWMTVSDFPYSWPLWQRYSSKFVTTNLV-----------------------IHGSRVDEGNIASIESMRSSQSDLQDIEVTPRRRHRGRKLGSWEEKAKXXXXXXXXXXXXXXXXXXXSKTKDDNXXXXXXXXXXDGSKSDE-CLSGCTYTSXXXXXXXXXXXXXXXXXXXXXXGCGAK 702
++SFE LY++AFR +++FWVKGSN+ GT FHS A + EMW +LGHINGNAIYNN DPAF EYV YT R+ ++PYDVALWMT+SDFPYSWPL+QRYSSKFV TNL+ IHGS VDEGN+AS E+ S ++VT +RH + W+E+ K XXXXXXXXXXXXX XXXXXXXXXX S +E C++GC YTS GCGAK
Sbjct: 148 DNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSNADAIEMWQLLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISSVGYEHVNHDTVSDAIAGNTLFIHGSSVDEGNVASYEATEGDAS----VDVTATQRHLTEDVPKWKEQEKWKTSXXXXXXXXXXXXXETDDGVXXXXXXXXXXXXXXXSPDEEGCMNGCEYTSKDGTRGRVCDSNCSRSDAYGTLGCGAK 401
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI) HSP 1 Score: 185 bits (469), Expect = 5.510e-50 Identity = 115/257 (44.75%), Postives = 142/257 (55.25%), Query Frame = 1
Query: 1 EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAIYNNKDPAFAEYVRYTFTRFNLDYPYDVALWMTVSDFPYSWPLWQRYSSKFVTTNLV-----------------------IHGSRVDEGNIASIESMRSSQSDLQDIEVTPRRRHRGRKLGSWEEKAKXXXXXXXXXXXXXXXXXXXSKTKDDNXXXXXXXXXXDGSKSDECLSGCTYTSXXXXXXXXXXXXXXXXXXXXXXGCGAK 702
++SFE LY++AFR +++FWVKGSN+ GT FHS A + EMW+VLGHINGNAIYNN DPAF EYV YT R+ ++PYDVALWMT+SDFPYSWPL+QRYSSKFV TNL+ IHGS VDEGN+AS E+ + ++V +R + W+ + K XXXXXXXXXX D S + C+ GC YTS GCGAK
Sbjct: 150 DNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSNADAIEMWHVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISSVGYEHVNHDTVSDAVAGKTLFIHGSSVDEGNVASYEATEGDAA----VDVATSQRQLTEDVPKWQAQEKWRNTSXXXXXXXXXXKKQYE----------------DSSDEEGCMDGCEYTSKDGTRGRVCDSNCSSPNVYGTLGCGAK 386
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI) HSP 1 Score: 184 bits (466), Expect = 1.360e-49 Identity = 93/170 (54.71%), Postives = 119/170 (70.00%), Query Frame = 1
Query: 1 EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAIYNNKDPAFAEYVRYTFTRFNLDYPYDVALWMTVSDFPYSWPLWQRYSSKFVTTNLV-----------------------IHGSRVDEGNIASIESMRSSQSDLQDIEVTPRRRHRGRKL 441
++SFE LY++AFR +++FWVKGSN+ GT FHS+A + EMW VLGHINGNAIYNN DPAF EYV YT R+ ++PYDVALWMT+SDFPYSWPL+QRYSSKFV TNL+ IHGS V++GN+AS E++ S+ + D+ ++ RGRKL
Sbjct: 149 DNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISYVGYEHVSHDTVSDAVAGKTLFIHGSSVEDGNVASYEAVASTATATVDVA----KQTRGRKL 314
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI) HSP 1 Score: 182 bits (461), Expect = 6.390e-49 Identity = 90/178 (50.56%), Postives = 119/178 (66.85%), Query Frame = 1
Query: 1 EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAIYNNKDPAFAEYVRYTFTRFNLDYPYDVALWMTVSDFPYSWPLWQRYSSKFVTTNLV-----------------------IHGSRVDEGNIASIESMRSSQSDLQDIEVTPRRRHRGRKLGSWEEKAK 465
++SFE LY++AFR +++FWVKGSN+ GT FHSTA + EMW VLGHINGNAIYNN DPAF EYV YT +R+ ++PYDVALWMT+SDFPYSWPL+QRYSSKFV TNL+ IHGS V+EGN+AS + ++ +++ + +R + + W+ K
Sbjct: 152 DNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSTAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRSRWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISSVGFEHVGHDMVSDAVAGQTLFIHGSSVEEGNVASFRAAAAAAVAVEEPQPAQQRSRKLTSVPKWKTAEK 329
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Match: A0A6H5JMG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG7_9PHAE) HSP 1 Score: 169 bits (428), Expect = 4.910e-48 Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 1
Query: 1 EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAIYNNKDPAFAEYVRYTFTRFNLDYPYDVALWMTVSDFPYSWPLWQRYSSKFVTTNLV 321
+ SFE LY++AFR +++FWVKGSN+ GT FHS+A +MW V+GHINGNAIYNN DPAFAEYV YT RF YPYDVALW+T+SDFPYSWPL+QRYS KFVTTNLV
Sbjct: 177 DRSFEELYHAAFRVNEEFWVKGSNLEGTNFHSSADVTDMWRVMGHINGNAIYNNNDPAFAEYVDYTRARFKYRYPYDVALWLTISDFPYSWPLYQRYSRKFVTTNLV 283
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Match: D7FR80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR80_ECTSI) HSP 1 Score: 178 bits (451), Expect = 1.240e-47 Identity = 88/145 (60.69%), Postives = 104/145 (71.72%), Query Frame = 1
Query: 1 EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAIYNNKDPAFAEYVRYTFTRFNLDYPYDVALWMTVSDFPYSWPLWQRYSSKFVTTNLV-----------------------IHGSRVDEGNIASIE 366
+ SFE LY++AFR +++FWVKGSN+ GT FHS+A +MW V+GHINGNAIYNN DPAFAEYV YT RF YPYDVALW+T+SDFPYSWPL+QRYS KFVTTNL+ IHGSRVDEG+ ASI+
Sbjct: 93 DRSFEELYHAAFRVNEEFWVKGSNLEGTNFHSSADVTDMWRVMGHINGNAIYNNNDPAFAEYVDYTRARFKYRYPYDVALWLTISDFPYSWPLYQRYSRKFVTTNLISYVGYEHVDHDTVSDAIAGQTLFIHGSRVDEGSGASIK 237
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.260e-46 Identity = 86/155 (55.48%), Postives = 110/155 (70.97%), Query Frame = 1
Query: 1 EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAIYNNKDPAFAEYVRYTFTRFNLDYPYDVALWMTVSDFPYSWPLWQRYSSKFVTTNLVIHGSRVDEGNIASIESMRSSQSDLQDIEVTPRRRHRGRKLGSWEEKAK 465
++SFE LY++AFR +++FWVKGSN+ GT FHSTA + EMW VLGHINGNAIYNN DPAF EYV YT R+ ++PYDVALWMT+SDFPYSWPL+QRYSSKFV TNLV GN+AS + ++ L+ E + + + W++ K
Sbjct: 33 DNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSTAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLV--------GNVASFRATAAAAVALKKPEPAQQSSRKLTSVPKWKKAEK 179
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Match: A0A6H5JHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL7_9PHAE) HSP 1 Score: 171 bits (434), Expect = 1.400e-45 Identity = 85/147 (57.82%), Postives = 109/147 (74.15%), Query Frame = 1
Query: 1 EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAIYNNKDPAFAEYVRYTFTRFNLDYPYDVALWMTVSDFPYSWPLWQRYSSKFVTTNLVIHGSRVDEGNIASIESMRSSQSDLQDIEVTPRRRHRGRKL 441
++SFE LY++A R +++FWVKGS + GT FHS+A + EMW VLGHINGNAIYNN DPAF EYV YT R+ ++PYDVALWMT+SDFPYSWPL+QRYSSKF+ TNLV +GN+AS + S+ + D+ ++ RGRKL
Sbjct: 41 DNSFEELYHAALRVNEEFWVKGSKLEGTSFHSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFIVTNLV------GDGNVASKAAAASTATATADVA----KQTRGRKL 177
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Match: A0A6H5JSN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN3_9PHAE) HSP 1 Score: 169 bits (429), Expect = 1.200e-44 Identity = 81/147 (55.10%), Postives = 105/147 (71.43%), Query Frame = 1
Query: 1 EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAIYNNKDPAFAEYVRYTFTRFNLDYPYDVALWMTVSDFPYSWPLWQRYSSKFVTTNLV-----------------------IHGSRVDEGNIASIESM 372
+ SFE LY++AFR +++FWVKGSN+ GT FHS++ +MW+VLGHINGNAIYNNKD AF EYV YT +R+ +YPYDVALW+T+SDFPYSWPL+QR+S+KFVTTNL+ IHG VDEG+ S++ +
Sbjct: 161 DRSFEELYHAAFRVNEEFWVKGSNLEGTNFHSSSMMSDMWHVLGHINGNAIYNNKDQAFVEYVDYTRSRWEYNYPYDVALWLTISDFPYSWPLYQRFSNKFVTTNLIAYVGKAHVDHGTVTDAIAGQTLFIHGKNVDEGSNLSVQKV 307
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Match: D8LLE5_ECTSI (Imm upregulated 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE5_ECTSI) HSP 1 Score: 167 bits (424), Expect = 1.640e-44 Identity = 87/178 (48.88%), Postives = 115/178 (64.61%), Query Frame = 1
Query: 1 EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAIYNNKDPAFAEYVRYTFTRFNLDYPYDVALWMTVSDFPYSWPLWQRYSSKFVTTNLV-----------------------IHGSRVDEGNIASIESMRSSQSDLQDIEVTPRRRHRGRKLGSWEEKAK 465
+ SFE LY++AFR +++FWVKGSN+ GT FHS++ +MW+VLGHINGNAIYNN D AF EYV YT R+ +YPYDVALW+T+SDFPYSWPL+QR+S+KFVTTNL+ IHG VDEG+ S+E + + ++ + RKL +W+E K
Sbjct: 33 DRSFEELYHAAFRVNEEFWVKGSNLEGTNFHSSSMMSDMWHVLGHINGNAIYNNNDQAFVEYVDYTRARWEDNYPYDVALWLTISDFPYSWPLYQRFSNKFVTTNLIAYVGKAHVDHGTVTDAIAGQTLFIHGKNVDEGSNLSVEKVNEANGTGKNGGASKV----VRKLQNWKENEK 206 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67923.14403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67923.14403.1 >prot_H-elongata_contig67923.14403.1 ID=prot_H-elongata_contig67923.14403.1|Name=mRNA_H-elongata_contig67923.14403.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp EHSFERLYNSAFRESQDFWVKGSNMGGTEFHSTAGSHEMWNVLGHINGNAback to top mRNA from alignment at H-elongata_contig67923:243..1623- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67923.14403.1 ID=mRNA_H-elongata_contig67923.14403.1|Name=mRNA_H-elongata_contig67923.14403.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1381bp|location=Sequence derived from alignment at H-elongata_contig67923:243..1623- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67923:243..1623- >mRNA_H-elongata_contig67923.14403.1 ID=mRNA_H-elongata_contig67923.14403.1|Name=mRNA_H-elongata_contig67923.14403.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig67923:243..1623- (Himanthalia elongata Himel1 dioecious)back to top |