mRNA_H-elongata_contig67901.14401.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67901.14401.1
Unique NamemRNA_H-elongata_contig67901.14401.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: D8LN08_ECTSI (Cilia- and flagella-associated protein 418 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN08_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.920e-36
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query:   19 ACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
            ACD+LRCT+C+F+VLCF  +AW   TDY+FLRNN PD  KL ARL P S + CAYACQCSWQNV+ +RALSP ERPRWAC GH
Sbjct:  217 ACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDS-CAYACQCSWQNVKDVRALSPTERPRWACGGH 298          
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: UPI0020144712 (cilia- and flagella-associated protein 418 n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI0020144712)

HSP 1 Score: 99.0 bits (245), Expect = 7.540e-24
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGHR 270
            T + + ACDRLRCT CDF VL F D  W +  +Y+F RNN PD  KL+ +L+   G  CAYACQCSW +   L  L   ++ +W C  H+
Sbjct:  123 TSISQRACDRLRCTSCDFSVLMFEDHEWDSSCNYLFFRNNMPDYHKLKGKLKKRKGG-CAYACQCSWHSALSLSDLREQQQLKWVCGKHK 211          
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: A0A1S3J1B3_LINUN (Cilia- and flagella-associated protein 418 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3J1B3_LINUN)

HSP 1 Score: 98.2 bits (243), Expect = 7.760e-24
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    7 VRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
            + + +CD+LRCT+CDFK++ F +  W A TDY+FLRNN PD  KL+ +L P +G   AYACQC W+NV  ++ +   +  +W C  H
Sbjct:   99 MNKRSCDKLRCTDCDFKIVTFDNFQWAASTDYLFLRNNVPDFKKLQKQLDPKNGMR-AYACQCKWRNVSEVKDVKTDQDLKWVCGRH 184          
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: UPI001F54E37A (cilia- and flagella-associated protein 418 isoform X3 n=1 Tax=Ictalurus punctatus TaxID=7998 RepID=UPI001F54E37A)

HSP 1 Score: 97.4 bits (241), Expect = 1.010e-23
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
            T V + ACD++RCT CDF+V+ F DQ W +  DY+F RNN PD  KLR +L+   GA  AYACQCSW +   L  L    + +W C  H
Sbjct:   77 TSVTQKACDQIRCTSCDFRVVMFDDQEWDSSCDYLFFRNNMPDCNKLRVKLKRRQGAR-AYACQCSWHSAFMLSELRHVPKLKWICGQH 164          
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: A0A7N4NSQ5_SARHA (Cilia- and flagella-associated protein 418 n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=A0A7N4NSQ5_SARHA)

HSP 1 Score: 98.2 bits (243), Expect = 1.540e-23
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
            T+  +  CD+LRCT CDF+VL F D  W    DY+F RNN P+  KL+A++    G T AYACQCSW+NVE L  L   ++ RW C  H
Sbjct:  124 TNTSQRTCDQLRCTACDFRVLNFDDYIWDKSCDYLFFRNNMPEFNKLKAKMTKRKG-TRAYACQCSWRNVEELTDLQTDQQLRWVCGKH 211          
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: A0A6P6R137_CARAU (Cilia- and flagella-associated protein 418 n=7 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6R137_CARAU)

HSP 1 Score: 97.8 bits (242), Expect = 1.770e-23
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGHR 270
            T V + AC+RLRCT CDF V+ F DQ W +  DY+F RNN PD  KL+A+LR       AYACQCSW +   L  L   ++ +W C  H+
Sbjct:  115 TSVSQRACNRLRCTSCDFSVIMFEDQEWDSSCDYLFFRNNMPDHHKLKAKLRRKKNGR-AYACQCSWHSAVSLSDLREQQQLKWVCGKHK 203          
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: A0A2D0RS04_ICTPU (Cilia- and flagella-associated protein 418 n=2 Tax=Ictaluridae TaxID=7996 RepID=A0A2D0RS04_ICTPU)

HSP 1 Score: 97.4 bits (241), Expect = 2.740e-23
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
            T V + ACD++RCT CDF+V+ F DQ W +  DY+F RNN PD  KLR +L+   GA  AYACQCSW +   L  L    + +W C  H
Sbjct:  118 TSVTQKACDQIRCTSCDFRVVMFDDQEWDSSCDYLFFRNNMPDCNKLRVKLKRRQGAR-AYACQCSWHSAFMLSELRHVPKLKWICGQH 205          
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: V4C0L9_LOTGI (Cilia- and flagella-associated protein 418 (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4C0L9_LOTGI)

HSP 1 Score: 94.4 bits (233), Expect = 3.100e-23
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    7 VRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
            V +  CD LRCT CDFKV  F D  W + TDY+FLRNNAPD  KL++ L+  +G   AY CQCSW++   L  L  ++  +W C  H
Sbjct:   19 VNQRICDSLRCTSCDFKVTIFPDYEWHSKTDYLFLRNNAPDFRKLKSNLKKVNGKVNAYNCQCSWRSFNDLTELKDSKL-KWVCGKH 104          
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: A0A2D0RSY1_ICTPU (Cilia- and flagella-associated protein 418 n=1 Tax=Ictalurus punctatus TaxID=7998 RepID=A0A2D0RSY1_ICTPU)

HSP 1 Score: 97.4 bits (241), Expect = 4.070e-23
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
            T V + ACD++RCT CDF+V+ F DQ W +  DY+F RNN PD  KLR +L+   GA  AYACQCSW +   L  L    + +W C  H
Sbjct:  136 TSVTQKACDQIRCTSCDFRVVMFDDQEWDSSCDYLFFRNNMPDCNKLRVKLKRRQGAR-AYACQCSWHSAFMLSELRHVPKLKWICGQH 223          
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: L1JKF8_GUITC (Cilia- and flagella-associated protein 418 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKF8_GUITC)

HSP 1 Score: 97.4 bits (241), Expect = 5.140e-23
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   19 ACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
            ACDRLRCT+CDF VL   D  W +D +Y+F RN  PD  KL+ +L+  SG  CAYACQC+W++   L  L      RW CRGH
Sbjct:  154 ACDRLRCTKCDFDVLRIKDMTWHSDCEYLFFRNFYPDVDKLKQKLKARSGF-CAYACQCTWRSASELTLLERNADMRWVCRGH 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN08_ECTSI1.920e-3669.88Cilia- and flagella-associated protein 418 n=1 Tax... [more]
UPI00201447127.540e-2446.67cilia- and flagella-associated protein 418 n=1 Tax... [more]
A0A1S3J1B3_LINUN7.760e-2445.98Cilia- and flagella-associated protein 418 n=1 Tax... [more]
UPI001F54E37A1.010e-2348.31cilia- and flagella-associated protein 418 isoform... [more]
A0A7N4NSQ5_SARHA1.540e-2349.44Cilia- and flagella-associated protein 418 n=1 Tax... [more]
A0A6P6R137_CARAU1.770e-2347.78Cilia- and flagella-associated protein 418 n=7 Tax... [more]
A0A2D0RS04_ICTPU2.740e-2348.31Cilia- and flagella-associated protein 418 n=2 Tax... [more]
V4C0L9_LOTGI3.100e-2348.28Cilia- and flagella-associated protein 418 (Fragme... [more]
A0A2D0RSY1_ICTPU4.070e-2348.31Cilia- and flagella-associated protein 418 n=1 Tax... [more]
L1JKF8_GUITC5.140e-2351.81Cilia- and flagella-associated protein 418 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67901contigH-elongata_contig67901:1223..1749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D8LN08
Preferred nameC8orf37
GOsGO:0000902,GO:0000904,GO:0001917,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005929,GO:0007275,GO:0007399,GO:0008150,GO:0008594,GO:0009653,GO:0009987,GO:0016020,GO:0016043,GO:0022008,GO:0030054,GO:0030154,GO:0030182,GO:0032501,GO:0032502,GO:0032989,GO:0042461,GO:0042995,GO:0043226,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044463,GO:0044464,GO:0046530,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0071840,GO:0071944,GO:0097458,GO:0097546,GO:0120025,GO:0120038
EggNOG free text desc.photoreceptor cell morphogenesis
EggNOG OGs2BMCE@1,2S1KM@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC8orf37 protein
Ec32 orthologEc-27_000930.1
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931070.7485769-CDS-H-elongata_contig67901:1222..13261622931070.7485769-CDS-H-elongata_contig67901:1222..1326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67901 1223..1326 -
1691679685.7317204-CDS-H-elongata_contig67901:1222..13261691679685.7317204-CDS-H-elongata_contig67901:1222..1326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67901 1223..1326 -
1622931070.7693975-CDS-H-elongata_contig67901:1580..17491622931070.7693975-CDS-H-elongata_contig67901:1580..1749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67901 1581..1749 -
1691679685.7441518-CDS-H-elongata_contig67901:1580..17491691679685.7441518-CDS-H-elongata_contig67901:1580..1749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67901 1581..1749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67901.14401.1prot_H-elongata_contig67901.14401.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67901 1223..1749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67901.14401.1

>prot_H-elongata_contig67901.14401.1 ID=prot_H-elongata_contig67901.14401.1|Name=mRNA_H-elongata_contig67901.14401.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRAR
LRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGHR*
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mRNA from alignment at H-elongata_contig67901:1223..1749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67901.14401.1 ID=mRNA_H-elongata_contig67901.14401.1|Name=mRNA_H-elongata_contig67901.14401.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=527bp|location=Sequence derived from alignment at H-elongata_contig67901:1223..1749- (Himanthalia elongata Himel1 dioecious)
ACGCACGTGCGGCGCAGTGCGTGCGATAGGCTACGGTGCACGGAATGTGA CTTCAAGGTGTTGTGTTTTGGTGATCAAGCCTGGGGAGCTGACACCGACT ACATATTCTTGAGGAACAACGCTCCCGATCCTGCCAAGCTTCGCGCACGG CTCCGACCCTCTTCAGGTGGTATAAAATTCAGTGCAATTGAGTTGGGATC GGAGCGGTAATCAAAAACACAGACGGCTACCATTTTATTATGCCAAGATG AACTGACACGAGCCCACGTCTTCGTGGTGATGGATCGCGTGCGAGTCGCA TTTGGTGCCCACGTTTCGAGAACATGCCTGAAGTACTGTAGTATCAACAT AGTTCCTCCCTCCCCCCCCTCCCCTCCCTCTCCCCTATGTTCCACCCTGA AAACGTCTCTGTAAAAATATCAGCCACGTGCGCGTACGCCTGTCAGTGCT CTTGGCAAAACGTGGAGGGTTTGCGCGCCCTCTCGCCTGCGGAGCGACCA CGGTGGGCATGTAGGGGTCATCGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig67901:1223..1749-

>mRNA_H-elongata_contig67901.14401.1 ID=mRNA_H-elongata_contig67901.14401.1|Name=mRNA_H-elongata_contig67901.14401.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig67901:1223..1749- (Himanthalia elongata Himel1 dioecious)
ACGCACGTGCGGCGCAGTGCGTGCGATAGGCTACGGTGCACGGAATGTGA
CTTCAAGGTGTTGTGTTTTGGTGATCAAGCCTGGGGAGCTGACACCGACT
ACATATTCTTGAGGAACAACGCTCCCGATCCTGCCAAGCTTCGCGCACGG
CTCCGACCCTCTTCAGGTGACGCACGTGCGGCGCAGTGCGTGCGATAGGC
TACGGTGCACGGAATGTGACTTCAAGGTGTTGTGTTTTGGTGATCAAGCC
TGGGGAGCTGACACCGACTACATATTCTTGAGGAACAACGCTCCCGATCC
TGCCAAGCTTCGCGCACGGCTCCGACCCTCTTCAGGTGCCACGTGCGCGT
ACGCCTGTCAGTGCTCTTGGCAAAACGTGGAGGGTTTGCGCGCCCTCTCG
CCTGCGGAGCGACCACGGTGGGCATGTAGGGGTCATCGTTAGCCACGTGC
GCGTACGCCTGTCAGTGCTCTTGGCAAAACGTGGAGGGTTTGCGCGCCCT
CTCGCCTGCGGAGCGACCACGGTGGGCATGTAGGGGTCATCGTTAG
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