mRNA_H-elongata_contig67901.14401.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: D8LN08_ECTSI (Cilia- and flagella-associated protein 418 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN08_ECTSI) HSP 1 Score: 133 bits (335), Expect = 1.920e-36 Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query: 19 ACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
ACD+LRCT+C+F+VLCF +AW TDY+FLRNN PD KL ARL P S + CAYACQCSWQNV+ +RALSP ERPRWAC GH
Sbjct: 217 ACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDS-CAYACQCSWQNVKDVRALSPTERPRWACGGH 298
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: UPI0020144712 (cilia- and flagella-associated protein 418 n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI0020144712) HSP 1 Score: 99.0 bits (245), Expect = 7.540e-24 Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGHR 270
T + + ACDRLRCT CDF VL F D W + +Y+F RNN PD KL+ +L+ G CAYACQCSW + L L ++ +W C H+
Sbjct: 123 TSISQRACDRLRCTSCDFSVLMFEDHEWDSSCNYLFFRNNMPDYHKLKGKLKKRKGG-CAYACQCSWHSALSLSDLREQQQLKWVCGKHK 211
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: A0A1S3J1B3_LINUN (Cilia- and flagella-associated protein 418 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3J1B3_LINUN) HSP 1 Score: 98.2 bits (243), Expect = 7.760e-24 Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 7 VRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
+ + +CD+LRCT+CDFK++ F + W A TDY+FLRNN PD KL+ +L P +G AYACQC W+NV ++ + + +W C H
Sbjct: 99 MNKRSCDKLRCTDCDFKIVTFDNFQWAASTDYLFLRNNVPDFKKLQKQLDPKNGMR-AYACQCKWRNVSEVKDVKTDQDLKWVCGRH 184
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: UPI001F54E37A (cilia- and flagella-associated protein 418 isoform X3 n=1 Tax=Ictalurus punctatus TaxID=7998 RepID=UPI001F54E37A) HSP 1 Score: 97.4 bits (241), Expect = 1.010e-23 Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
T V + ACD++RCT CDF+V+ F DQ W + DY+F RNN PD KLR +L+ GA AYACQCSW + L L + +W C H
Sbjct: 77 TSVTQKACDQIRCTSCDFRVVMFDDQEWDSSCDYLFFRNNMPDCNKLRVKLKRRQGAR-AYACQCSWHSAFMLSELRHVPKLKWICGQH 164
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: A0A7N4NSQ5_SARHA (Cilia- and flagella-associated protein 418 n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=A0A7N4NSQ5_SARHA) HSP 1 Score: 98.2 bits (243), Expect = 1.540e-23 Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
T+ + CD+LRCT CDF+VL F D W DY+F RNN P+ KL+A++ G T AYACQCSW+NVE L L ++ RW C H
Sbjct: 124 TNTSQRTCDQLRCTACDFRVLNFDDYIWDKSCDYLFFRNNMPEFNKLKAKMTKRKG-TRAYACQCSWRNVEELTDLQTDQQLRWVCGKH 211
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: A0A6P6R137_CARAU (Cilia- and flagella-associated protein 418 n=7 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6R137_CARAU) HSP 1 Score: 97.8 bits (242), Expect = 1.770e-23 Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGHR 270
T V + AC+RLRCT CDF V+ F DQ W + DY+F RNN PD KL+A+LR AYACQCSW + L L ++ +W C H+
Sbjct: 115 TSVSQRACNRLRCTSCDFSVIMFEDQEWDSSCDYLFFRNNMPDHHKLKAKLRRKKNGR-AYACQCSWHSAVSLSDLREQQQLKWVCGKHK 203
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: A0A2D0RS04_ICTPU (Cilia- and flagella-associated protein 418 n=2 Tax=Ictaluridae TaxID=7996 RepID=A0A2D0RS04_ICTPU) HSP 1 Score: 97.4 bits (241), Expect = 2.740e-23 Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
T V + ACD++RCT CDF+V+ F DQ W + DY+F RNN PD KLR +L+ GA AYACQCSW + L L + +W C H
Sbjct: 118 TSVTQKACDQIRCTSCDFRVVMFDDQEWDSSCDYLFFRNNMPDCNKLRVKLKRRQGAR-AYACQCSWHSAFMLSELRHVPKLKWICGQH 205
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: V4C0L9_LOTGI (Cilia- and flagella-associated protein 418 (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4C0L9_LOTGI) HSP 1 Score: 94.4 bits (233), Expect = 3.100e-23 Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 7 VRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
V + CD LRCT CDFKV F D W + TDY+FLRNNAPD KL++ L+ +G AY CQCSW++ L L ++ +W C H
Sbjct: 19 VNQRICDSLRCTSCDFKVTIFPDYEWHSKTDYLFLRNNAPDFRKLKSNLKKVNGKVNAYNCQCSWRSFNDLTELKDSKL-KWVCGKH 104
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: A0A2D0RSY1_ICTPU (Cilia- and flagella-associated protein 418 n=1 Tax=Ictalurus punctatus TaxID=7998 RepID=A0A2D0RSY1_ICTPU) HSP 1 Score: 97.4 bits (241), Expect = 4.070e-23 Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 1 THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
T V + ACD++RCT CDF+V+ F DQ W + DY+F RNN PD KLR +L+ GA AYACQCSW + L L + +W C H
Sbjct: 136 TSVTQKACDQIRCTSCDFRVVMFDDQEWDSSCDYLFFRNNMPDCNKLRVKLKRRQGAR-AYACQCSWHSAFMLSELRHVPKLKWICGQH 223
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Match: L1JKF8_GUITC (Cilia- and flagella-associated protein 418 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKF8_GUITC) HSP 1 Score: 97.4 bits (241), Expect = 5.140e-23 Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 19 ACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARLRPSSGATCAYACQCSWQNVEGLRALSPAERPRWACRGH 267
ACDRLRCT+CDF VL D W +D +Y+F RN PD KL+ +L+ SG CAYACQC+W++ L L RW CRGH
Sbjct: 154 ACDRLRCTKCDFDVLRIKDMTWHSDCEYLFFRNFYPDVDKLKQKLKARSGF-CAYACQCTWRSASELTLLERNADMRWVCRGH 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67901.14401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67901.14401.1 >prot_H-elongata_contig67901.14401.1 ID=prot_H-elongata_contig67901.14401.1|Name=mRNA_H-elongata_contig67901.14401.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp THVRRSACDRLRCTECDFKVLCFGDQAWGADTDYIFLRNNAPDPAKLRARback to top mRNA from alignment at H-elongata_contig67901:1223..1749- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67901.14401.1 ID=mRNA_H-elongata_contig67901.14401.1|Name=mRNA_H-elongata_contig67901.14401.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=527bp|location=Sequence derived from alignment at H-elongata_contig67901:1223..1749- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67901:1223..1749- >mRNA_H-elongata_contig67901.14401.1 ID=mRNA_H-elongata_contig67901.14401.1|Name=mRNA_H-elongata_contig67901.14401.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig67901:1223..1749- (Himanthalia elongata Himel1 dioecious)back to top |