mRNA_H-elongata_contig6784.14399.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6784.14399.1
Unique NamemRNA_H-elongata_contig6784.14399.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6784.14399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6784contigH-elongata_contig6784:1360..3779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size645
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6784.14399.1prot_H-elongata_contig6784.14399.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6784 1360..3779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931070.3992188-CDS-H-elongata_contig6784:1359..15301622931070.3992188-CDS-H-elongata_contig6784:1359..1530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6784 1360..1530 -
1691679685.60273-CDS-H-elongata_contig6784:1359..15301691679685.60273-CDS-H-elongata_contig6784:1359..1530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6784 1360..1530 -
1622931070.4160025-CDS-H-elongata_contig6784:1767..18291622931070.4160025-CDS-H-elongata_contig6784:1767..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6784 1768..1829 -
1691679685.6117883-CDS-H-elongata_contig6784:1767..18291691679685.6117883-CDS-H-elongata_contig6784:1767..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6784 1768..1829 -
1622931070.432101-CDS-H-elongata_contig6784:2260..25011622931070.432101-CDS-H-elongata_contig6784:2260..2501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6784 2261..2501 -
1691679685.6201954-CDS-H-elongata_contig6784:2260..25011691679685.6201954-CDS-H-elongata_contig6784:2260..2501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6784 2261..2501 -
1622931070.4457157-CDS-H-elongata_contig6784:3608..37791622931070.4457157-CDS-H-elongata_contig6784:3608..3779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6784 3609..3779 -
1691679685.6309192-CDS-H-elongata_contig6784:3608..37791691679685.6309192-CDS-H-elongata_contig6784:3608..3779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6784 3609..3779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6784.14399.1

>prot_H-elongata_contig6784.14399.1 ID=prot_H-elongata_contig6784.14399.1|Name=mRNA_H-elongata_contig6784.14399.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
MQQQHRSNKRSSPSYHWEGFGRKNTKPPWFDCRIFDKERRDLGWVVKNFG
PSEVVNKRGRKGAAQFVHDTDARLYRPTVPQCGHLGVEVPATPSSRVFVT
RDVESSVCKGKKRVAMQDAYRRSHLQMLANVDASRRSEVRETICGRGLTI
NKPFLYPQNVTHGQALNVEKRAGQSLPFDAKPGPSSRADPKQSEIWNQHM
YLPYTRTRTDFPYA*
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mRNA from alignment at H-elongata_contig6784:1360..3779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6784.14399.1 ID=mRNA_H-elongata_contig6784.14399.1|Name=mRNA_H-elongata_contig6784.14399.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2420bp|location=Sequence derived from alignment at H-elongata_contig6784:1360..3779- (Himanthalia elongata Himel1 dioecious)
ATGCAACAACAGCATCGCAGTAATAAGCGGTCTTCGCCGTCGTATCATTG
GGAGGGTTTTGGGAGGAAAAACACCAAGCCGCCGTGGTTCGACTGCCGGA
TCTTCGACAAAGAGCGGCGTGACCTCGGGTGGGTCGTCAAGAACTTCGGT
CCTTCCGAAGTTGTCAACAAGGTGCGTAGGGAGGAGACACGTGTGAGGAA
TCTTATCTGACAACTCAGCTTTGGAGCGCAGGGTGCTGCAGGTGGTTAAG
CTCGGCCGAAGATATACTGGTCGTGACAGCGTGGTTGTCGGCGGCGTATC
CCAATCTCTAATAATATCAAAAAGCAGTATTCTAGCCGTAGATCATGGCA
GTTATCTACATTATTTTCAACTTGCTTGCTGACTCAAAATACCATCTATC
ATAACTGGAAGAAGGAAAATAAATCTTGTGGCGTGCTCCCTACTTTCATC
TTGAGCGTGAACTTGCTTGCTGCAGCAGCTATACGATATCGTAAATAAGA
ATATATACGCACTGTCAACAGAAAATAGTTCGAATATACTCGGGAAGTGT
AGTTTCGGGGAAGCGCCAACTCCGTCGAAAAACACGGTGCCCTAAGGTAA
CCCACTCGTGAAGCGACCAAAGGAAACAAGCCCTTGTTTGATCGAGAACG
TAAGATCAGGCGATGGGGTCGAGAGCCCAAAATGACACAATAAAGGGTCC
CTTAGCGACCTCGATACGTAGGAGCTACCCAGGAATGTGCTAATAATGAC
AACACATCGCGCTTTGGGGATCCAAAGCCAGTCGCTGTTTCGGCTTGGGA
TCTGTTGAACGCACTGCCAAGGCATCGTGGGGTATATGACTCCCTCGCAG
TTCACGTTCATCTCCGATTTGTGTTTTCGCCTCTTTTCCCGACTATCATT
AGGGAACCCAACTTGATCTCATGTGGCATTTTTTTGTTCTCACAGTTAAT
GTATCCACCCACTCGACCCACTCGAATCTGACGATAGTTGGTCCCCTAGG
TTAAACCGAACGAACCTAATGCTAAAAATGTGTGGATGTCCGGAGGGTTT
GAATGGGTTCAGGATTTGGGGGGGGGGGGGGGATATATATTATATAAGCC
CTGGTCACTTGTAAAATCGGGGTAGTGTGTTAAGAAAAATGGGTCAACCG
AGTGACGTGCCAGTCCCCGACGACTTGTGCCGATTATTTACACACCATAA
CCTATCGATATCCTCGACCCTAATCTGAGCCAATTGTGTTCGATCTCCTT
GACCTACCGCTTGGATCTGGATCCGAAGCGCGGAAGGAAGGGCGCGGCCC
AGTTCGTTCACGACACGGACGCGCGTCTTTACAGGCCAACCGTCCCTCAA
TGTGGTCACCTGGGCGTCGAAGTCCCGGCCACTCCATCGTCGCGCGTGTT
TGTTACCCGCGACGTGGAAAGTTCCGTGTGCAAGGGTAAAAAGCGGGTTG
CCATGCAGGATGCGTATCGTCGCTCCCACTTGCAGATGCTCGCCAACGTC
GACGCTTCTCGGCGCTCAGGTCCGTGTGTGCCTCTTACATAATTAGTCAC
AAGAGGTGACAATCAGAACGCGCGCTATGGGGACGACGTCATTCTGGAGG
GTTGACTCACGTCGTGAAAGTTTGCACGGAAGCGTTCGTCACACTACAAT
AGCCGCGATTTTGAGCGCGTTCCACCACCAGCGAATTCCGGTCGATGCGA
CGCGGACGGTCGTAGAATCGTGCCGCCTAGGCTGATGGTGTCGATCACAT
CGTGACATCCTCGAAGGTTTGCACTTAGGTTGCATTCGTACCGTACTCTG
CGCGGGGGGAGGGGGGGGGGCACAGTTTTCCGCAAAGACATAAGCGATTC
GTGGGGGGCTGTCGTAGTGAATACCTGCGATGCGTTTCGCAGACCCCACC
GTGTGCAATGCGTGGTTTTCTCAACGGGCTTTGTCCCCACTCTTCGACAG
AAGTTCGCGAGACTATCTGCGGACGGGGATTGACGATCAACAAGCCCTTC
CTCTATCCCCAGGTGGGCCACAACCCAAAACCGATTTGCCAATATCAGCG
CTAGTTCGTTCGGGGTCGAAGAGCTCGACTAGATCTACGGCATCACAAGA
AGCGCCCCACGTTTTGGTGCCACAAATACATAGAGCCGTCATTTTTGTTT
CTTTTCCTCGTTTTCATTTTTTTACGCAGTTCGCGCGGTACTTCAATGGC
CTCTACCTCGACGTGCCTGCTCCATGTATTTCATGGACCTTTCCCCCAGA
ATGTGACCCACGGACAGGCTCTGAATGTTGAGAAAAGAGCCGGGCAGAGC
CTTCCGTTTGACGCTAAGCCCGGGCCTTCCTCGCGCGCTGATCCAAAGCA
GTCCGAGATATGGAATCAACACATGTACTTACCCTACACGAGGACAAGGA
CGGACTTCCCCTATGCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig6784:1360..3779-

>mRNA_H-elongata_contig6784.14399.1 ID=mRNA_H-elongata_contig6784.14399.1|Name=mRNA_H-elongata_contig6784.14399.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig6784:1360..3779- (Himanthalia elongata Himel1 dioecious)
ATGCAACAACAGCATCGCAGTAATAAGCGGTCTTCGCCGTCGTATCATTG
GGAGGGTTTTGGGAGGAAAAACACCAAGCCGCCGTGGTTCGACTGCCGGA
TCTTCGACAAAGAGCGGCGTGACCTCGGGTGGGTCGTCAAGAACTTCGGT
CCTTCCGAAGTTGTCAACAAGATGCAACAACAGCATCGCAGTAATAAGCG
GTCTTCGCCGTCGTATCATTGGGAGGGTTTTGGGAGGAAAAACACCAAGC
CGCCGTGGTTCGACTGCCGGATCTTCGACAAAGAGCGGCGTGACCTCGGG
TGGGTCGTCAAGAACTTCGGTCCTTCCGAAGTTGTCAACAAGCGCGGAAG
GAAGGGCGCGGCCCAGTTCGTTCACGACACGGACGCGCGTCTTTACAGGC
CAACCGTCCCTCAATGTGGTCACCTGGGCGTCGAAGTCCCGGCCACTCCA
TCGTCGCGCGTGTTTGTTACCCGCGACGTGGAAAGTTCCGTGTGCAAGGG
TAAAAAGCGGGTTGCCATGCAGGATGCGTATCGTCGCTCCCACTTGCAGA
TGCTCGCCAACGTCGACGCTTCTCGGCGCTCAGCGCGGAAGGAAGGGCGC
GGCCCAGTTCGTTCACGACACGGACGCGCGTCTTTACAGGCCAACCGTCC
CTCAATGTGGTCACCTGGGCGTCGAAGTCCCGGCCACTCCATCGTCGCGC
GTGTTTGTTACCCGCGACGTGGAAAGTTCCGTGTGCAAGGGTAAAAAGCG
GGTTGCCATGCAGGATGCGTATCGTCGCTCCCACTTGCAGATGCTCGCCA
ACGTCGACGCTTCTCGGCGCTCAGAAGTTCGCGAGACTATCTGCGGACGG
GGATTGACGATCAACAAGCCCTTCCTCTATCCCCAGAAGTTCGCGAGACT
ATCTGCGGACGGGGATTGACGATCAACAAGCCCTTCCTCTATCCCCAGAA
TGTGACCCACGGACAGGCTCTGAATGTTGAGAAAAGAGCCGGGCAGAGCC
TTCCGTTTGACGCTAAGCCCGGGCCTTCCTCGCGCGCTGATCCAAAGCAG
TCCGAGATATGGAATCAACACATGTACTTACCCTACACGAGGACAAGGAC
GGACTTCCCCTATGCTTGAAATGTGACCCACGGACAGGCTCTGAATGTTG
AGAAAAGAGCCGGGCAGAGCCTTCCGTTTGACGCTAAGCCCGGGCCTTCC
TCGCGCGCTGATCCAAAGCAGTCCGAGATATGGAATCAACACATGTACTT
ACCCTACACGAGGACAAGGACGGACTTCCCCTATGCTTGA
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