mRNA_H-elongata_contig67806.14394.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE) HSP 1 Score: 206 bits (524), Expect = 8.370e-62 Identity = 91/143 (63.64%), Postives = 106/143 (74.13%), Query Frame = 1
Query: 22 ELFWALGDAGPQEDTNGHGQRTDVLFGSMVRISVPSQGTGYEVPSGNYPSSELSEICAIGFRNIWRCGFDRLTDDLYCGDVGHEYIESIYNVECGNNYGWVRFEGSRCTEYSED-DYGT-CTDVDRSGYTFPIFEYCHFDYDS 444
+L+W GD GPQ D N H Q T + G+M+RI+VPS G+GY +PSGNY L EICAIGFRN WRC FDR TDDLYCGDVGH ++E I VECGNNYGW RFEGSRC E E+ +Y C VDRSG+TFP++EYCH DY S
Sbjct: 255 DLYWTTGDGGPQTDYNNHAQDTQSMLGAMMRITVPSDGSGYTIPSGNYGGGALDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVENNEYNPPCDGVDRSGFTFPLYEYCHPDYSS 397
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI) HSP 1 Score: 207 bits (528), Expect = 7.760e-61 Identity = 90/145 (62.07%), Postives = 103/145 (71.03%), Query Frame = 1
Query: 10 SDYHELFWALGDAGPQEDTNGHGQRTDVLFGSMVRISVPSQGTGYEVPSGNYPSSELSEICAIGFRNIWRCGFDRLTDDLYCGDVGHEYIESIYNVECGNNYGWVRFEGSRCTEYSEDDYGTCTDVDRSGYTFPIFEYCHFDYDS 444
+ YH+++W GD Q D HGQ T L GS++RISVP+ GTGYE+P+GN S L EICA GFRN WRC FDR TD+LYCGDVGH +E I VECGNNYGW RFEGSRC E E G C D DRS +TFPI+EYCH DY S
Sbjct: 251 ASYHDIYWTTGDGASQTDPENHGQDTTNLLGSVMRISVPADGTGYEIPTGNLASPALPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVECGNNYGWSRFEGSRCQEAQESRDGPCLDTDRSAFTFPIYEYCHPDYSS 395
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI) HSP 1 Score: 200 bits (509), Expect = 5.290e-58 Identity = 87/148 (58.78%), Postives = 103/148 (69.59%), Query Frame = 1
Query: 10 SDYHELFWALGDAGPQEDTNGHGQRTDVLFGSMVRISVPSQGTGYEVPSGNYPSSELSEICAIGFRNIWRCGFDRLTDDLYCGDVGHEYIESIYNVECGNNYGWVRFEGSRCTEYSEDDY--GTCTDVDRSGYTFPIFEYCHFDYDSS 447
S +L+W GD GPQ D H Q T + G+M+RI+VPS G GY +PSGNY L EICAIGFRN WRC FDR D+LYCGDVGH ++E I VECGNNYGW RFEGSRC E ED+ C + RSG+TFP++EYCH DY S+
Sbjct: 314 SSPQDLYWTTGDGGPQTDPENHSQDTQTMLGAMMRITVPSDGDGYTIPSGNYGGGALDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVEDNEFNPACDGISRSGFTFPLYEYCHPDYQST 461
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI) HSP 1 Score: 194 bits (492), Expect = 1.390e-57 Identity = 88/146 (60.27%), Postives = 103/146 (70.55%), Query Frame = 1
Query: 16 YHELFWALGDAGPQEDTNGHGQRTDVLFGSMVRISVPSQGTGYEVPSGNYPSSELSEICAIGFRNIWRCGFDRLTDDLYCGDVGHEYIESIYNVECGNNYGWVRFEGSRCTEYSEDDYGT--CTDVDRSGYTFPIFEYCHFDYDSS 447
Y +L+W GD GPQ D H Q + G+M+RISVP+ GTGY +P GNY S+ +EICAIG RN WRC FDRL DDLYCGDVG E I VECGNNYGW RFEGSRC E +D+ C VDRSG+TFP+FEYCH D+DS+
Sbjct: 244 YQDLYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPPGNYHGSK-AEICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTFPLFEYCHPDFDST 388
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE) HSP 1 Score: 182 bits (461), Expect = 1.120e-52 Identity = 80/131 (61.07%), Postives = 97/131 (74.05%), Query Frame = 1
Query: 61 DTNGHGQRTDVLFGSMVRISVPSQGTGYEVPSGNYPSSELSEICAIGFRNIWRCGFDRLTDDLYCGDVGHEYIESIYNVECGNNYGWVRFEGSRCTEYSEDDYGT--CTDVDRSGYTFPIFEYCHFDYDSS 447
D H Q + G+M+RISVPS GTGY +P GNYP ++ +E+CAIG RN WRCGFDRL D+LYCGDVGH +E I +ECGNNYGW RFEGSRC E +D+ C VDRSG+T+P+FEYCH DYDS+
Sbjct: 209 DPGNHSQDETTMLGAMMRISVPSDGTGYTIPPGNYPGAK-AEVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTYPLFEYCHPDYDST 338
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI) HSP 1 Score: 176 bits (445), Expect = 3.530e-48 Identity = 81/150 (54.00%), Postives = 101/150 (67.33%), Query Frame = 1
Query: 16 YHELFWALGDAGPQEDTNGHGQRTDVLFGSMVRISVPS--QGTGYEVPSGNY---PSSELSEICAIGFRNIWRCGFDRLTDDLYCGDVGHEYIESIYNVECGNNYGWVRFEGSRCTEYSED-DYGTCTDVDRSGYTFPIFEYCHFDYDSS 447
YH+++W +GD GPQ D + Q L GS+VRISVPS GTGYE+P+GN + E EICA G RN RC FD TD+LYCGDVG + +E + +ECG +YGW FEGSRC + E D G C+ +DR+ Y FP+FEYCH DYDSS
Sbjct: 321 YHDIYWTVGDGGPQNDPDNKAQDMTNLHGSIVRISVPSTAMGTGYEIPAGNPFDGANGEKPEICAWGLRNPHRCAFDTATDELYCGDVGQDRVEEVNVIECGKDYGWRMFEGSRCNDGFEGYDGGECSGLDRADYAFPVFEYCHVDYDSS 470
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI) HSP 1 Score: 164 bits (416), Expect = 2.400e-45 Identity = 77/146 (52.74%), Postives = 92/146 (63.01%), Query Frame = 1
Query: 16 YHELFWALGDAGPQEDTNGHGQRTDVLFGSMVRISVPSQGTGYEVPSGNYPSSELSEICAIGFRNIWRCGFDRLTDDLYCGDVGHEYIESIYNVECGNNYGWVRFEGSRCTEYSEDDYGT--CTDVDRSGYTFPIFEYCHFDYDSS 447
Y +L+W GD GPQ D H Q GTGY +P GNY ++ +EICAIG RN WRC FDRL DDLYCGDVG +E I +ECGNNYGW RFEGSRC E +D+ C + RSG+TFP+FEYCH D+DS+
Sbjct: 171 YQDLYWTTGDGGPQTDPFNHSQ----------------DGTGYTIPPGNYHGAK-AEICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGISRSGFTFPLFEYCHPDFDST 299
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI) HSP 1 Score: 165 bits (417), Expect = 2.220e-44 Identity = 79/137 (57.66%), Postives = 96/137 (70.07%), Query Frame = 1
Query: 19 HELFWALGDAGPQEDTNGHGQRTDVLFGSMVRISVPSQ-GTGYEVPSGNYPSSE--LSEICAIGFRNIWRCGFDRLTDDLYCGDVGHEYIESIYNVECGNNYGWVRFEGSRCTEYSEDDYG-TCTDVDRSGYTFPIF 417
HELFWA+GD+GPQ DT GQ ++L GS++RI V S+ +GY +PSGN S EICA G RN +RC FDRL DDLYCGDVGH +ESI +ECGNNYGW +FEG RC + ED + TC +DRS +TFP F
Sbjct: 307 HELFWAMGDSGPQLDTFDRGQDPNILHGSIIRIGVSSEMESGYSIPSGNPFSGGGGRGEICAQGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEF 443
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.980e-41 Identity = 74/141 (52.48%), Postives = 91/141 (64.54%), Query Frame = 1
Query: 19 HELFWALGDAGPQEDTNGHGQRTDVLFGSMVRISVPSQGTGYEVPSGNYPSSELSEICAIGFRNIWRCGFDRLTDDLYCGDVGHEYIESIYNVECGNNYGWVRFEGSRCTEYSEDDYG-TCTDVDRSGYTFPIFEYCHFDY 438
HELFWA+GD+GPQ DT+ GQ ++L GS++RI V SSE+ G RN +RC FDRL DDLYCGDVGH +ESI +ECGNNYGW +FEG RC + ED + TC +DRS +TFP F YCH D+
Sbjct: 222 HELFWAMGDSGPQLDTSDRGQDPNILHGSIIRIEV---------------SSEMGSGDKEGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEFNYCHPDF 347
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI) HSP 1 Score: 135 bits (341), Expect = 3.490e-34 Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 1
Query: 16 YHELFWALGDAGPQEDTNGHGQRTDVLFGSMVRISVPSQGTGYEVPSGNYPSSELSEICAIGFRNIWRCGFDRLTDDLYCGDVGHEYIESIYNVE 300
Y +L+W GD GPQ D H Q + G+M+RISVP+ GTGY +PSGNYP ++ +E+CAIG RN WRCGFDRL DDLYCGDVGH +E I +E
Sbjct: 270 YSDLYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPSGNYPGAK-AEVCAIGLRNPWRCGFDRLNDDLYCGDVGHTLVEEINFIE 363 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67806.14394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67806.14394.1 >prot_H-elongata_contig67806.14394.1 ID=prot_H-elongata_contig67806.14394.1|Name=mRNA_H-elongata_contig67806.14394.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp MLQSDYHELFWALGDAGPQEDTNGHGQRTDVLFGSMVRISVPSQGTGYEVback to top mRNA from alignment at H-elongata_contig67806:1810..3019+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67806.14394.1 ID=mRNA_H-elongata_contig67806.14394.1|Name=mRNA_H-elongata_contig67806.14394.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-elongata_contig67806:1810..3019+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67806:1810..3019+ >mRNA_H-elongata_contig67806.14394.1 ID=mRNA_H-elongata_contig67806.14394.1|Name=mRNA_H-elongata_contig67806.14394.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig67806:1810..3019+ (Himanthalia elongata Himel1 dioecious)back to top |