mRNA_H-elongata_contig67783.14386.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67783.14386.1
Unique NamemRNA_H-elongata_contig67783.14386.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67783.14386.1 vs. uniprot
Match: D8LG39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG39_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 5.170e-21
Identity = 164/294 (55.78%), Postives = 178/294 (60.54%), Query Frame = 1 
Query:   31 RGVWDEAGSGDLEALAAALAPGGDGDVNACAVDGWTALHAAAHVGHAAAV-SLLVRSGASTAARAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPPDAWGRNAAAVARQLNRTGPLRLLEATTSTDIGRKRAANGXXXXXXXXXXXXXVKGMGPCNGEEEEDGAHHECDSISNADG----GVGSRYVRRWPPVGDGGXXX-----GSRWVVMNESGRMLERASGKVS 882
            RG+WDEA +GDL ALAAAL PGG+GDV+AC  DGWTALH+AAH GH  AV SLLV SGAS A+ A+                                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PPDAWGR+ AAVARQL+R GPL+LLEA              XXXXXXXXXXXXX                                GV      R   +G+GG        G+RWVVMNESGRMLER SGKV+
Sbjct:   96 RGLWDEAAAGDLAALAAALTPGGEGDVHACNGDGWTALHSAAHAGHGLAVISLLVGSGASPASVARRGYTPLHSACMRGRWHSAAALLALGADANVRADDQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHFPPDAWGRDPAAVARQLDRAGPLKLLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVDDEEAER--VIGEGGQKGATAVVGNRWVVMNESGRMLERRSGKVA 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67783.14386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG39_ECTSI5.170e-2155.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67783contigH-elongata_contig67783:68..2346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue1.6e-19
Seed eggNOG ortholog2880.D8LG39
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-11_002050.1
Exons4
Model size888
Cds size888
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67783.14386.1prot_H-elongata_contig67783.14386.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67783 68..2346 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.126946-CDS-H-elongata_contig67783:67..5071622931069.126946-CDS-H-elongata_contig67783:67..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67783 68..507 -
1691679685.0057738-CDS-H-elongata_contig67783:67..5071691679685.0057738-CDS-H-elongata_contig67783:67..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67783 68..507 -
1622931069.151283-CDS-H-elongata_contig67783:821..9391622931069.151283-CDS-H-elongata_contig67783:821..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67783 822..939 -
1691679685.016652-CDS-H-elongata_contig67783:821..9391691679685.016652-CDS-H-elongata_contig67783:821..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67783 822..939 -
1622931069.169001-CDS-H-elongata_contig67783:1499..16991622931069.169001-CDS-H-elongata_contig67783:1499..1699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67783 1500..1699 -
1691679685.0262063-CDS-H-elongata_contig67783:1499..16991691679685.0262063-CDS-H-elongata_contig67783:1499..1699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67783 1500..1699 -
1622931069.1877222-CDS-H-elongata_contig67783:2216..23461622931069.1877222-CDS-H-elongata_contig67783:2216..2346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67783 2217..2346 -
1691679685.0357957-CDS-H-elongata_contig67783:2216..23461691679685.0357957-CDS-H-elongata_contig67783:2216..2346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67783 2217..2346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67783.14386.1

>prot_H-elongata_contig67783.14386.1 ID=prot_H-elongata_contig67783.14386.1|Name=mRNA_H-elongata_contig67783.14386.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=296bp
GGNPVGRTGVRGVWDEAGSGDLEALAAALAPGGDGDVNACAVDGWTALHA
AAHVGHAAAVSLLVRSGASTAARAKRGWTPLHSACMRGRSQAVRALLSAR
ADVNARAVDQRTPLHFACEAGSPECTKELLRAGASVNVSDQDARTPLHFA
CIDGSTECVRRLLAAGASPLPPDAWGRNAAAVARQLNRTGPLRLLEATTS
TDIGRKRAANGGASEGSSSPPPPPVKGMGPCNGEEEEDGAHHECDSISNA
DGGVGSRYVRRWPPVGDGGGGGGSRWVVMNESGRMLERASGKVSC*
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mRNA from alignment at H-elongata_contig67783:68..2346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67783.14386.1 ID=mRNA_H-elongata_contig67783.14386.1|Name=mRNA_H-elongata_contig67783.14386.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2279bp|location=Sequence derived from alignment at H-elongata_contig67783:68..2346- (Himanthalia elongata Himel1 dioecious)
GGCGGAAACCCCGTGGGAAGGACAGGCGTCAGGGGAGTGTGGGATGAGGC
GGGCAGCGGGGATCTCGAGGCACTGGCCGCGGCGTTAGCTCCGGGGGGGG
ACGGGGACGTCAACGCGTGTGCGGTGGACGGTGAGTTGAGTTGGATAGGT
AGCTGCTGTACGTAGCTATCCGCAGACCTGATGGATTCACTCATCTTTAG
ACTGTACCACAGTAGCGGCGACCTTCTGATTGTTGTTATATAACGTGAAG
GAGATGTGAGCAAGTACGCGTACTGTTATAATGTAGTTTACCGTAACCTG
ATGCTCTCGAGACAACGACATCAAATTCAGAGATCCCAATAAAGCCGTGG
TGCTTATACTGAGTGTTCGAATGTGTTTGTTTGTCGTCGTGGTCATTTGT
GTCTTTCTGCATTCTGTTCTGTTCTGTTTTTGTGCTTTGTGCATTATATG
CTTATTTGTATGTCTCTGCGTCTTGTCATTTTTTCTCGAGACAGTTCTAT
GGTTACTTTCTTCCATTTTACTTGCTTTGTTTTATTTTATCTAGCCTTCT
ATCTTAATGCGAAGTATTATCTCATTTATCTATTTACTCTTTATAATTAT
ACATTTTCATATATTTTTGTTAATTGTCATATATTACGCGCGCCTAGGGT
GGACGGCGCTCCACGCTGCGGCTCACGTGGGCCATGCCGCGGCGGTATCG
CTTCTCGTTCGCAGCGGAGCTTCCACCGCGGCGCGCGCAAAACGTGGTTG
GACCCCGCTGCATTCAGCATGCATGCGTGGCCGCTCGCAGGCGGTTCGCG
CCCTTCTTTCCGCCAGGGCAGACGTCAACGCGCGGGCAGTAGATCAGGTC
AGCCACGAAAACTATGGTAGCAAGGCGTGGGCATAACGCACATATAGAGA
CATATATATATATCACCCTGCGCGCGCACGATAATATAATATTCCATAAA
ATAATTGAACAGGGCAGGGCAGGGCAAGGTAGCAGCGTCATTATCCTCGA
GTGCACGAGTGGTAACAGAAAACCGTAATGCAGCGTCATTATTCTTGACT
GCACGAGTGGTAACACAAGGTCGTCTTAAGGGATTTAGTTAGCCGATTAT
GTCCAAAAGGGTGCGGCGGCGGGACACACACACATATTCGCTGCACTAAA
ACAGAGTTTTACTGTACACCACTGGTACCGTAGTCGCCCTGTTTTTTTGG
GGTTTTTTTTAGGCTGCAGTAGTGGTTATAATACACTTCGGAAAAATACA
CGCGCCCTCGTGCGTTTCGGCCCACCCTTTCTGTCTGACTCCCTTGTGTG
GCTTGGTCCACCCTCTATCTTTCTCTCTTTCTCTTTGTGTGTCTCATTGT
GGGTGCGCGCGTATATGTTGGTTTTATCTGTCCGCATCCTCCCTACTACC
ACCATAGCGCACCCCGCTGCACTTCGCCTGCGAGGCTGGATCCCCCGAGT
GTACGAAGGAGCTTCTCCGGGCCGGCGCGTCGGTCAACGTATCCGACCAA
GACGCCAGGACGCCGCTGCACTTCGGTGAGGGAAGGGCCAAAGTACGTAG
TCGCGCACTACTTACATGACGCGATAGAACGGCGGCCGAGCTTTCTCTTC
GCCTCTCGTGCTCGCGAGCAAGTAAGGAAGAAAGGAAAGAGACGGGGGAA
GAATTCTACATCCAACGAGAGTTTTCCCATGCTGGCGAAGACAGAAGCGG
TCGACGGTTGGTTGAGGTAGAATTCGAACCTACCACGGGAAGCACAGACG
CACTAACACTCACACAATACCCGCCGCACCGCCCATGTCACAACTTTGCG
CACGTTTTTTCGTGCACGTGTTACACCCCCCCGACACAGCGTGTATCGAC
GGATCGACCGAATGCGTGCGGCGCCTCCTTGCCGCGGGCGCCTCCCCTCT
TCCCCCCGATGCCTGGGGCCGCAATGCCGCCGCGGTCGCGCGCCAGCTCA
ACCGCACGGGCCCCCTCCGGCTTCTCGAGGCCACGACCTCCACAGACATT
GGCCGAAAGCGCGCCGCTAATGGTGGCGCTAGCGAAGGTAGCTCTTCGCC
GCCGCCTCCTCCTGTAAAGGGCATGGGGCCTTGCAACGGGGAAGAAGAAG
AGGACGGTGCGCACCATGAGTGCGACAGCATCAGCAACGCCGACGGTGGG
GTCGGGAGTAGGTATGTGAGAAGATGGCCACCGGTAGGCGATGGCGGTGG
CGGCGGCGGCAGTCGATGGGTGGTGATGAATGAGAGCGGGCGCATGCTGG
AAAGGGCCAGCGGGAAGGTGAGTTGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig67783:68..2346-

>mRNA_H-elongata_contig67783.14386.1 ID=mRNA_H-elongata_contig67783.14386.1|Name=mRNA_H-elongata_contig67783.14386.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1776bp|location=Sequence derived from alignment at H-elongata_contig67783:68..2346- (Himanthalia elongata Himel1 dioecious)
GGCGGAAACCCCGTGGGAAGGACAGGCGTCAGGGGAGTGTGGGATGAGGC
GGGCAGCGGGGATCTCGAGGCACTGGCCGCGGCGTTAGCTCCGGGGGGGG
ACGGGGACGTCAACGCGTGTGCGGTGGACGGGCGGAAACCCCGTGGGAAG
GACAGGCGTCAGGGGAGTGTGGGATGAGGCGGGCAGCGGGGATCTCGAGG
CACTGGCCGCGGCGTTAGCTCCGGGGGGGGACGGGGACGTCAACGCGTGT
GCGGTGGACGGGTGGACGGCGCTCCACGCTGCGGCTCACGTGGGCCATGC
CGCGGCGGTATCGCTTCTCGTTCGCAGCGGAGCTTCCACCGCGGCGCGCG
CAAAACGTGGTTGGACCCCGCTGCATTCAGCATGCATGCGTGGCCGCTCG
CAGGCGGTTCGCGCCCTTCTTTCCGCCAGGGCAGACGTCAACGCGCGGGC
AGTAGATCAGGGTGGACGGCGCTCCACGCTGCGGCTCACGTGGGCCATGC
CGCGGCGGTATCGCTTCTCGTTCGCAGCGGAGCTTCCACCGCGGCGCGCG
CAAAACGTGGTTGGACCCCGCTGCATTCAGCATGCATGCGTGGCCGCTCG
CAGGCGGTTCGCGCCCTTCTTTCCGCCAGGGCAGACGTCAACGCGCGGGC
AGTAGATCAGCGCACCCCGCTGCACTTCGCCTGCGAGGCTGGATCCCCCG
AGTGTACGAAGGAGCTTCTCCGGGCCGGCGCGTCGGTCAACGTATCCGAC
CAAGACGCCAGGACGCCGCTGCACTTCGCGCACCCCGCTGCACTTCGCCT
GCGAGGCTGGATCCCCCGAGTGTACGAAGGAGCTTCTCCGGGCCGGCGCG
TCGGTCAACGTATCCGACCAAGACGCCAGGACGCCGCTGCACTTCGCGTG
TATCGACGGATCGACCGAATGCGTGCGGCGCCTCCTTGCCGCGGGCGCCT
CCCCTCTTCCCCCCGATGCCTGGGGCCGCAATGCCGCCGCGGTCGCGCGC
CAGCTCAACCGCACGGGCCCCCTCCGGCTTCTCGAGGCCACGACCTCCAC
AGACATTGGCCGAAAGCGCGCCGCTAATGGTGGCGCTAGCGAAGGTAGCT
CTTCGCCGCCGCCTCCTCCTGTAAAGGGCATGGGGCCTTGCAACGGGGAA
GAAGAAGAGGACGGTGCGCACCATGAGTGCGACAGCATCAGCAACGCCGA
CGGTGGGGTCGGGAGTAGGTATGTGAGAAGATGGCCACCGGTAGGCGATG
GCGGTGGCGGCGGCGGCAGTCGATGGGTGGTGATGAATGAGAGCGGGCGC
ATGCTGGAAAGGGCCAGCGGGAAGGTGAGTTGTTGACGTGTATCGACGGA
TCGACCGAATGCGTGCGGCGCCTCCTTGCCGCGGGCGCCTCCCCTCTTCC
CCCCGATGCCTGGGGCCGCAATGCCGCCGCGGTCGCGCGCCAGCTCAACC
GCACGGGCCCCCTCCGGCTTCTCGAGGCCACGACCTCCACAGACATTGGC
CGAAAGCGCGCCGCTAATGGTGGCGCTAGCGAAGGTAGCTCTTCGCCGCC
GCCTCCTCCTGTAAAGGGCATGGGGCCTTGCAACGGGGAAGAAGAAGAGG
ACGGTGCGCACCATGAGTGCGACAGCATCAGCAACGCCGACGGTGGGGTC
GGGAGTAGGTATGTGAGAAGATGGCCACCGGTAGGCGATGGCGGTGGCGG
CGGCGGCAGTCGATGGGTGGTGATGAATGAGAGCGGGCGCATGCTGGAAA
GGGCCAGCGGGAAGGTGAGTTGTTGA
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