mRNA_H-elongata_contig67735.14385.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67735.14385.1
Unique NamemRNA_H-elongata_contig67735.14385.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.850e-11
Identity = 26/42 (61.90%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    7 DGACDPQNLIPECEWDGGDCCRCTCEDEAYICGSDGFVCIDP 132
            DG CD +N   EC WDGGDCC CTC D  Y CG  GF C+DP
Sbjct: 1979 DGWCDLENNNAECNWDGGDCCECTCVDSQYECGIQGFSCLDP 2020
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BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 8.010e-11
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    7 DGACDPQNLIPECEWDGGDCCRCTCEDEAYICGSDGFVCIDP 132
            DG CD  N   ECE+DGGDCC CTC+++ Y CG  GF C+DP
Sbjct:   39 DGECDTHNNNAECEYDGGDCCSCTCQNDTYDCGVSGFDCVDP 80
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BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.820e-10
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 MGDGACDPQNLIPECEWDGGDCCRCTCED-EAYICGSDGFVCIDP 132
            M DG CD  N  P C++DGGDCC C+C D   Y CGS+GF C+DP
Sbjct:  156 MNDGYCDSSNNYPSCDYDGGDCCECSCVDGHDYECGSNGFSCLDP 200
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BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 2.490e-9
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 MGDGACDPQNLIPECEWDGGDCCRCTCEDEAYICGSDGFVCIDP 132
            MG+G C P+N IPECE+DGGDCC C+C+   Y+C    F C+DP
Sbjct:  162 MGNGLCIPENNIPECEYDGGDCCECSCQPAQYMCLG-RFDCLDP 204
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BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-8
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:    1 MGDGACDPQNLIPECEWDGGDCCRCTCEDEAYICGSDGFVCIDP 132
            +GDG C  +N    C++DGGDCC CTC D  Y CG   F CIDP
Sbjct:   74 IGDGFCSDENNNEVCDYDGGDCCECTCVDAFYPCGYVAFACIDP 117
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BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 25/44 (56.82%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:    1 MGDGACDPQNLIPECEWDGGDCCRCTCEDEAYICGSDGFVCIDP 132
            +GDG CD  N   EC+WDGGDCC CTC    Y CG   F C DP
Sbjct:  318 IGDGHCDYYNNNEECDWDGGDCCACTCVSGYYTCGYYTFDCEDP 361
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BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.210e-8
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 1 
Query:    1 MGDGACDPQNLIPECEWDGGDCCRCTCEDE----AYICGSDGFVCIDPD 135
            +G+G CD  N  PEC +DGGDCC CTCE       Y C    F CIDP+
Sbjct:  242 IGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPE 290
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BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8
Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 MGDGACDPQNLIPECEWDGGDCCRCTCEDEAYI-CGSDGFVCIDP 132
            +GDG+CD  N   EC+WDGGDCC CTCE  +Y  C S    C DP
Sbjct:  231 IGDGSCDYYNNNEECDWDGGDCCSCTCEGSSYYSCSSYSMDCQDP 275
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BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Match: D7G2E3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2E3_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.090e-7
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 MGDGACDPQNLIPECEWDGGDCCRCTCEDEAY----ICGSDGF-VCIDP 132
            +G+G CDP+N   EC++DGGDCC CTC+        +C SD F  CIDP
Sbjct:   36 IGNGECDPRNNKEECDYDGGDCCECTCDPSLGTSDDLCKSDSFYACIDP 84
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BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Match: A0A1R2AT64_9CILI (EGF-like domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AT64_9CILI)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:    1 MGDGACDPQNLIPECEWDGGDCCRCTCEDEA-----YICGSDGFVCIDPDE 138
            M DG CD  N I EC++DGGDCCR TCE        Y CGS G+ C++  E
Sbjct:   50 MSDGKCDVFNNIKECDYDGGDCCRFTCEKNCEGKCLYACGSMGYDCLEDTE 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67735.14385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FHG7_ECTSI5.850e-1161.90LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JTT4_9PHAE8.010e-1159.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Y7_ECTSI3.820e-1057.78Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FV90_ECTSI2.490e-956.82Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE1.190e-854.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP4_9PHAE1.630e-856.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP6_ECTSI2.210e-851.02Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FX77_ECTSI3.050e-855.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2E3_ECTSI1.090e-751.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1R2AT64_9CILI1.990e-750.98EGF-like domain-containing protein n=1 Tax=Stentor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67735contigH-elongata_contig67735:2607..2744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue3.4e-09
Seed eggNOG ortholog2880.D7FHG7
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.063699-CDS-H-elongata_contig67735:2606..27441622931069.063699-CDS-H-elongata_contig67735:2606..2744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67735 2607..2744 +
1691679684.9934638-CDS-H-elongata_contig67735:2606..27441691679684.9934638-CDS-H-elongata_contig67735:2606..2744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67735 2607..2744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67735.14385.1prot_H-elongata_contig67735.14385.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67735 2607..2744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67735.14385.1

>prot_H-elongata_contig67735.14385.1 ID=prot_H-elongata_contig67735.14385.1|Name=mRNA_H-elongata_contig67735.14385.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MGDGACDPQNLIPECEWDGGDCCRCTCEDEAYICGSDGFVCIDPDE
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mRNA from alignment at H-elongata_contig67735:2607..2744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67735.14385.1 ID=mRNA_H-elongata_contig67735.14385.1|Name=mRNA_H-elongata_contig67735.14385.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig67735:2607..2744+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGATGGTGCTTGTGACCCGCAAAACCTCATTCCCGAGTGTGAATG
GGACGGGGGAGACTGTTGCAGATGTACGTGTGAAGACGAGGCATATATCT
GCGGTTCTGATGGCTTCGTATGTATCGATCCCGACGAA
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Coding sequence (CDS) from alignment at H-elongata_contig67735:2607..2744+

>mRNA_H-elongata_contig67735.14385.1 ID=mRNA_H-elongata_contig67735.14385.1|Name=mRNA_H-elongata_contig67735.14385.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig67735:2607..2744+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGATGGTGCTTGTGACCCGCAAAACCTCATTCCCGAGTGTGAATG
GGACGGGGGAGACTGTTGCAGATGTACGTGTGAAGACGAGGCATATATCT
GCGGTTCTGATGGCTTCGTATGTATCGATCCCGACGAAATGGGGGATGGT
GCTTGTGACCCGCAAAACCTCATTCCCGAGTGTGAATGGGACGGGGGAGA
CTGTTGCAGATGTACGTGTGAAGACGAGGCATATATCTGCGGTTCTGATG
GCTTCGTATGTATCGATCCCGACGAA
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