mRNA_H-elongata_contig67716.14383.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67716.14383.1
Unique NamemRNA_H-elongata_contig67716.14383.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67716.14383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67716contigH-elongata_contig67716:51..218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue8.3e-10
Seed eggNOG ortholog2880.D8LLY0
Preferred nameNWD1
KEGG koko:K04508,ko:K10594,ko:K11127
KEGG Pathwayko04013,ko04120,ko04310,map04013,map04120,map04310
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG2319@1,KOG0271@1,KOG0271@2759,KOG0273@2759,KOG0613@1,KOG0613@2759
EC2.3.2.26
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931068.8140059-CDS-H-elongata_contig67716:50..2181622931068.8140059-CDS-H-elongata_contig67716:50..218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67716 51..218 -
1691679684.924977-CDS-H-elongata_contig67716:50..2181691679684.924977-CDS-H-elongata_contig67716:50..218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67716 51..218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67716.14383.1prot_H-elongata_contig67716.14383.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67716 51..218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67716.14383.1

>prot_H-elongata_contig67716.14383.1 ID=prot_H-elongata_contig67716.14383.1|Name=mRNA_H-elongata_contig67716.14383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
FVQTSYGRTKRCHIFRGLYRGQPYSFQVRAVNNEGTGPWSEASESAWTLT
ERPAPP
back to top

mRNA from alignment at H-elongata_contig67716:51..218-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67716.14383.1 ID=mRNA_H-elongata_contig67716.14383.1|Name=mRNA_H-elongata_contig67716.14383.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig67716:51..218- (Himanthalia elongata Himel1 dioecious)
TTTGTCCAGACGTCCTACGGCCGCACGAAGCGGTGTCATATTTTCCGAGG
CCTCTACAGGGGACAGCCCTACTCCTTCCAAGTCCGAGCGGTCAACAACG
AAGGCACCGGTCCGTGGTCTGAAGCAAGCGAGTCGGCGTGGACGCTCACC
GAGCGCCCGGCACCGCCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig67716:51..218-

>mRNA_H-elongata_contig67716.14383.1 ID=mRNA_H-elongata_contig67716.14383.1|Name=mRNA_H-elongata_contig67716.14383.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig67716:51..218- (Himanthalia elongata Himel1 dioecious)
TTTGTCCAGACGTCCTACGGCCGCACGAAGCGGTGTCATATTTTCCGAGG
CCTCTACAGGGGACAGCCCTACTCCTTCCAAGTCCGAGCGGTCAACAACG
AAGGCACCGGTCCGTGGTCTGAAGCAAGCGAGTCGGCGTGGACGCTCACC
GAGCGCCCGGCACCGCCGTTTGTCCAGACGTCCTACGGCCGCACGAAGCG
GTGTCATATTTTCCGAGGCCTCTACAGGGGACAGCCCTACTCCTTCCAAG
TCCGAGCGGTCAACAACGAAGGCACCGGTCCGTGGTCTGAAGCAAGCGAG
TCGGCGTGGACGCTCACCGAGCGCCCGGCACCGCCG
back to top