mRNA_H-elongata_contig67711.14381.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: D8LLE4_ECTSI (PRLI-interacting factor L-like (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE4_ECTSI) HSP 1 Score: 118 bits (295), Expect = 5.940e-33 Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 1
Query: 1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCLVPE 255
FN+FM +F++ENS +LFR KGVLAFKDQ +KFVFQ GVH+Q+ CEP+ N WA +G +R SKIVFIGL LDK+YITE K C+VPE
Sbjct: 2 FNKFMAEFLRENSANLFRSKGVLAFKDQERKFVFQ-GVHEQIDCEPAINGWA-EGEERVSKIVFIGLDLDKDYITESFKACIVPE 84
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A6H5K110_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K110_9PHAE) HSP 1 Score: 118 bits (295), Expect = 2.380e-29 Identity = 56/85 (65.88%), Postives = 71/85 (83.53%), Query Frame = 1
Query: 1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCLVPE 255
FN+FM +F++ENS +LFR KGVLAFKDQ +K+VFQ GVH+Q+ CEP+ N WA +G +RESKIVFIGL LD +YITE +K C+VPE
Sbjct: 415 FNKFMGEFLRENSANLFRSKGVLAFKDQERKYVFQ-GVHEQIDCEPAINGWA-EGEERESKIVFIGLDLDNDYITESLKACIVPE 497
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A7S3JV87_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV87_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 6.860e-14 Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQ-KFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCLVPED 258
FN FM + ++ + DL+R KGVL+F Q KFVFQ GVH+Q+ P+ + W + R SKIVFIG LD++++ E I+ CLV D
Sbjct: 263 FNLFMAELLQTRAADLYRTKGVLSFAGQGDTKFVFQ-GVHEQINFGPAQSPWQPN-EPRVSKIVFIGRNLDRKFLNESIRACLVSSD 347
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A6U2FXS0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2FXS0_HEMAN) HSP 1 Score: 69.3 bits (168), Expect = 3.700e-13 Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGC 243
FN FM ++ + DL+R KGVL FK KFVF GVH+Q+ PS WA G K+VFIG +LD+ ++T+ I GC
Sbjct: 51 FNTFMTSLLQTRANDLYRCKGVLKFKGNDDKFVFH-GVHEQIEFGPSEVGWAQ-GEKIMVKMVFIGRKLDRAFLTDGITGC 129
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A7S0VMP5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VMP5_9CRYP) HSP 1 Score: 69.3 bits (168), Expect = 7.510e-12 Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGC 243
FN FM + ++ + DL+R KGVL FK KFVF GVH+Q+ PS WA G K+VFIG +LD+ ++T+ I GC
Sbjct: 441 FNMFMTNLLQTRANDLYRCKGVLKFKGNDDKFVFH-GVHEQIEFGPSEVGWAQ-GEKIMVKMVFIGRKLDRAFLTDGITGC 519
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A0K2D9W3_9HYPH (Cobalamin biosynthesis protein CobW n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A0K2D9W3_9HYPH) HSP 1 Score: 63.5 bits (153), Expect = 7.190e-10 Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1
Query: 1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGC 243
F ++ D ++ ++ R KG+LAF+D+P++FVFQ GVH + EW G +R SKIVFIG LDKE I E C
Sbjct: 270 FLPWVNDLVQREGPNILRSKGILAFRDEPRRFVFQ-GVH-MILDGDLQREWKP-GEERRSKIVFIGRNLDKEAIREGFLAC 347
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A6M5YHV0_9BACT (Metal chaperone, involved in Zn homeostasis n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YHV0_9BACT) HSP 1 Score: 62.4 bits (150), Expect = 1.920e-9 Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 4 NEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCL 246
N++M + ++ D+FR KGVL+ K++P +FVFQ GVH + W + R +K+VFIG +LD+E +TE K CL
Sbjct: 289 NKWMSELLQSKGPDIFRMKGVLSIKNEPNRFVFQ-GVH-MLFDGKLDKPWGK--TPRSNKLVFIGRKLDREALTEGFKSCL 365
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A2Z3H994_9BACT (Cobalamin biosynthesis protein CobW n=3 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3H994_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 3.610e-9 Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query: 4 NEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCL 246
N++M + ++E D+FR KGVL+ K+ P +FVFQ GVH P W + R +K++FIG LD+ +TE K CL
Sbjct: 292 NKWMMELLQEKGPDIFRMKGVLSIKNDPNRFVFQ-GVHMLFDGRPDK-PWGK--TPRSNKLIFIGRNLDRGALTEGFKSCL 368
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: UPI00036B32B1 (GTP-binding protein n=1 Tax=Zavarzinella formosa TaxID=360055 RepID=UPI00036B32B1) HSP 1 Score: 61.2 bits (147), Expect = 5.190e-9 Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query: 4 NEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCL 246
N+++ D ++E +D+FR KGVL+ K P +FVFQ GVH P EW + R +K+VFIG LD++ + E CL
Sbjct: 368 NKWLADLLQEKGQDIFRMKGVLSLKGDPNRFVFQ-GVHMTFDGRPD-REWG--DTPRSNKLVFIGRNLDRKALNEGFAKCL 444
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Match: A0A1B3E1L4_9PSED (Cobalamin biosynthesis protein n=1 Tax=Pseudomonas sp. TCU-HL1 TaxID=1856685 RepID=A0A1B3E1L4_9PSED) HSP 1 Score: 60.8 bits (146), Expect = 6.650e-9 Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 1 FNEFMRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADGSDRESKIVFIGLRLDKEYITEKIKGCL 246
F+ ++ + E ++LFR KG+LA KDQ Q++V Q GVH + ++ W R SKIVFIG LD+E + E+ + CL
Sbjct: 277 FHRWIAELRDEQGENLFRMKGILAVKDQDQRYVLQ-GVHSLIEFR-AAQPWG--NQPRSSKIVFIGRDLDREALNERFQACL 354 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67711.14381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67711.14381.1 >prot_H-elongata_contig67711.14381.1 ID=prot_H-elongata_contig67711.14381.1|Name=mRNA_H-elongata_contig67711.14381.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp MRDFMKENSKDLFRQKGVLAFKDQPQKFVFQQGVHDQVTCEPSSNEWAADback to top mRNA from alignment at H-elongata_contig67711:1164..1662+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67711.14381.1 ID=mRNA_H-elongata_contig67711.14381.1|Name=mRNA_H-elongata_contig67711.14381.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=499bp|location=Sequence derived from alignment at H-elongata_contig67711:1164..1662+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67711:1164..1662+ >mRNA_H-elongata_contig67711.14381.1 ID=mRNA_H-elongata_contig67711.14381.1|Name=mRNA_H-elongata_contig67711.14381.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig67711:1164..1662+ (Himanthalia elongata Himel1 dioecious)back to top |