mRNA_H-elongata_contig67682.14376.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67682.14376.1
Unique NamemRNA_H-elongata_contig67682.14376.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67682.14376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67682contigH-elongata_contig67682:509..1859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931068.112883-CDS-H-elongata_contig67682:508..6721622931068.112883-CDS-H-elongata_contig67682:508..672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67682 509..672 +
1691679684.673397-CDS-H-elongata_contig67682:508..6721691679684.673397-CDS-H-elongata_contig67682:508..672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67682 509..672 +
1622931068.1283913-CDS-H-elongata_contig67682:1648..18591622931068.1283913-CDS-H-elongata_contig67682:1648..1859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67682 1649..1859 +
1691679684.68188-CDS-H-elongata_contig67682:1648..18591691679684.68188-CDS-H-elongata_contig67682:1648..1859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67682 1649..1859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67682.14376.1prot_H-elongata_contig67682.14376.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67682 509..1859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67682.14376.1

>prot_H-elongata_contig67682.14376.1 ID=prot_H-elongata_contig67682.14376.1|Name=mRNA_H-elongata_contig67682.14376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
GKWSADGHQGQGQRFPAGMATTRAETRIRLHRREEPARARGSEHRDPGGD
IFKARSRQPYRPSPGKPGHHFTLTNYQNCSTTSIRTNARPLDDEKQPSAP
QKTPRRGMAHATYTNRARRSRTCSP
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mRNA from alignment at H-elongata_contig67682:509..1859+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67682.14376.1 ID=mRNA_H-elongata_contig67682.14376.1|Name=mRNA_H-elongata_contig67682.14376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1351bp|location=Sequence derived from alignment at H-elongata_contig67682:509..1859+ (Himanthalia elongata Himel1 dioecious)
GGCAAATGGAGCGCCGATGGCCATCAGGGACAAGGCCAAAGATTCCCGGC
GGGTATGGCAACTACCCGGGCCGAGACCCGGATTCGCCTACATCGTCGCG
AGGAACCAGCCAGGGCCAGAGGAAGCGAACACCGGGACCCTGGGGGGGAT
ATTTTCAAGGCCAGGTGCGCCGCTTTGTCCGTTCGTTGTACTAATAATCG
TATACGACAGTCCTATGATTTTAATGGTAAGGATGCTAACTGTATGACTA
CACTACGGTGGTACAGGAACAAGAGGTCCTTGGGGGTACAGTCGATACTT
CCAATTACACATCAGGCACTTCTTATCTTTAGCCTTTAGTCTCGTAATGA
TGCCAGTGGTGTAGTCAGCACGGTTGCGTTCAAACGTCGCCCTAGGGCCC
CATCCTTCCGGCTTTACTCTACTTGTAGAGCCCTGAGAAGGCGCTTTCCT
GAGCAGGGTGGGGGTTAAAGCGGGGGAAGGCGTCGACTCGGGATCTCCCC
TTTGGCCGGTGGAAACCGTTTCATAATCCCAAGCGCGTCTCCCCTCTAAA
AGGTTGACTGGGGCATAATAATATACTATAATACTCCGTATACAGTACTG
TACCTGGTATAAAATAGTATAGTTAATATAGTATATAGTGTCTTCTGCTG
GAGCTCGTTCAGTCCACCTCGCCAGTATAATATAGGGTTTCCACGTGTTA
TAAAAAGTGTATGAAAAACATGCACTAAAATGAACAGGACCCTAAACTAG
TCTGCCAGTGGTGGACTAGTTTAGGTTCCTGTTCACTTTAGTGCATGTTT
TTCGTGCATTGTTTGTGACACGTGGTAACCCTATAATATAGTTATTTTTA
GCGATTTTTCGGTTATGATGCATGATTATGATGATGATACCATGGTACAT
GATGATGATGCATGATGATGATGATCACCCCGACAAACAAGAAATTTGGG
TCATCATCGAAAGAGGGCACACACTCCAGGGCAATGTTATACTGTATGAT
ATATGTATATATGCTCCGTATATGATTTCTGCACACCCTGGTATATAGTA
AGGACTTTTCCACCCCTGGGGTTGTTGCCTTACTCATACGAACCCTCTCT
CTATTTATATTCCGATTATATATATCGAACAATCGAACAGGAGCAGGCAG
CCCTACCGACCAAGCCCTGGGAAGCCGGGGCACCACTTCACCCTGACGAA
TTACCAGAACTGCAGCACTACCAGCATCAGGACCAACGCCAGACCTCTCG
ACGACGAGAAACAGCCCTCGGCACCCCAGAAGACGCCGCGTCGGGGTATG
GCACACGCCACATATACCAACAGGGCTCGCCGCAGCCGCACCTGCAGTCC
C
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Coding sequence (CDS) from alignment at H-elongata_contig67682:509..1859+

>mRNA_H-elongata_contig67682.14376.1 ID=mRNA_H-elongata_contig67682.14376.1|Name=mRNA_H-elongata_contig67682.14376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig67682:509..1859+ (Himanthalia elongata Himel1 dioecious)
GGCAAATGGAGCGCCGATGGCCATCAGGGACAAGGCCAAAGATTCCCGGC
GGGTATGGCAACTACCCGGGCCGAGACCCGGATTCGCCTACATCGTCGCG
AGGAACCAGCCAGGGCCAGAGGAAGCGAACACCGGGACCCTGGGGGGGAT
ATTTTCAAGGCCAGGGCAAATGGAGCGCCGATGGCCATCAGGGACAAGGC
CAAAGATTCCCGGCGGGTATGGCAACTACCCGGGCCGAGACCCGGATTCG
CCTACATCGTCGCGAGGAACCAGCCAGGGCCAGAGGAAGCGAACACCGGG
ACCCTGGGGGGGATATTTTCAAGGCCAGGAGCAGGCAGCCCTACCGACCA
AGCCCTGGGAAGCCGGGGCACCACTTCACCCTGACGAATTACCAGAACTG
CAGCACTACCAGCATCAGGACCAACGCCAGACCTCTCGACGACGAGAAAC
AGCCCTCGGCACCCCAGAAGACGCCGCGTCGGGGTATGGCACACGCCACA
TATACCAACAGGGCTCGCCGCAGCCGCACCTGCAGTCCCGAGCAGGCAGC
CCTACCGACCAAGCCCTGGGAAGCCGGGGCACCACTTCACCCTGACGAAT
TACCAGAACTGCAGCACTACCAGCATCAGGACCAACGCCAGACCTCTCGA
CGACGAGAAACAGCCCTCGGCACCCCAGAAGACGCCGCGTCGGGGTATGG
CACACGCCACATATACCAACAGGGCTCGCCGCAGCCGCACCTGCAGTCCC
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