mRNA_H-elongata_contig67641.14372.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Match: D7FJK6_ECTSI (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK6_ECTSI) HSP 1 Score: 274 bits (701), Expect = 4.440e-85 Identity = 138/198 (69.70%), Postives = 159/198 (80.30%), Query Frame = 1
Query: 1 GMHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDAGEGVRTARELSMWEQLSFAAFLQRYWADNQARHCTVTFDPVTEGHQLAHALDYFQYQLKGVSFLPRVEHGAFPQARSERDTAERGRRTATANRMPYEEISEEKYESLTGNLRKPDFSRRRGNPRKDG-GARVEEVPDNFCETDACS 591
GMHYPESRFY+RRVR+++DADVLGPLREAGYRLEPA +PEGT+VVEVPVDAGEGVRTA++LSMWEQLSFAAFLQRYWADNQ CT+TFDP TEGH LAHALDYFQYQLKGVSFLPR+++GAFPQ MPYE ISE++Y+S LR +FSRRRG R +G G RVEEVPD +CE+D+C+
Sbjct: 530 GMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPEGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRYWADNQVS-CTITFDPETEGHHLAHALDYFQYQLKGVSFLPRMDYGAFPQ-------------------MPYEAISEDEYKSQISKLRHLNFSRRRGQTRGEGDGVRVEEVPDRYCESDSCT 707
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Match: A0A6H5KM58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM58_9PHAE) HSP 1 Score: 259 bits (663), Expect = 3.140e-80 Identity = 139/232 (59.91%), Postives = 158/232 (68.10%), Query Frame = 1
Query: 1 GMHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDAGEGVRTARELSMWEQLSFAAFLQRYWADNQARH----------------------------------CTVTFDPVTEGHQLAHALDYFQYQLKGVSFLPRVEHGAFPQARSERDTAERGRRTATANRMPYEEISEEKYESLTGNLRKPDFSRRRGNPRKDG-GARVEEVPDNFCETDACS 591
GMHYPESRFY+RRVR+++DADVLGPLREAGYRLEPA +PEGT+VVEVPVDAGE VRTA++LSMWEQLSFAAFLQRYWADNQA CT+TFDP TEG LAHALDYFQYQLKGVSFLPR ++GAFPQ MPYE ISE++Y+S LR DFSRRRG R +G GARVEEVPD +CE+D+C+
Sbjct: 411 GMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPEGTMVVEVPVDAGEAVRTAQDLSMWEQLSFAAFLQRYWADNQASFLCFGALTLRTWIFTSHASTLCIQRYTPFVFVQVSCTITFDPDTEGKHLAHALDYFQYQLKGVSFLPRTDYGAFPQ-------------------MPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDSCT 623
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Match: A0A835YMD1_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD1_9STRA) HSP 1 Score: 219 bits (558), Expect = 4.260e-64 Identity = 116/197 (58.88%), Postives = 140/197 (71.07%), Query Frame = 1
Query: 1 GMHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDAGEGVRTARELSMWEQLSFAAFLQRYWADNQARHCTVTFDPVTEGHQLAHALDYFQYQLKGVSFLPRVEHGAFPQARSERDTAERGRRTATANRMPYEEISEEKYESLTGNLRKPDFSRRRGNPRKDGGARVEEVPDNFCETDACS 591
GMHYPE+RFY+RRVRV+A++++L PLR AG +EP +P GTVVVE+PVDAGEGVRT+REL++WEQLSFAAFLQRYWADNQ CTVTFDP TE QL HALDYFQYQLKGVSFLPR+ GA+PQ MPYE IS +Y ++ +F+ RG R+ A +EVPD FC+TDAC+
Sbjct: 509 GMHYPEARFYVRRVRVAAESELLAPLRAAGLPVEPCAMNP-GTVVVEIPVDAGEGVRTSRELTLWEQLSFAAFLQRYWADNQVS-CTVTFDPETEAAQLPHALDYFQYQLKGVSFLPRIAAGAYPQ-------------------MPYEAISAAQYAERMRSVSPVNFAALRGR-RQRRAADADEVPDKFCDTDACA 683
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Match: W7T512_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T512_9STRA) HSP 1 Score: 208 bits (529), Expect = 3.470e-59 Identity = 113/199 (56.78%), Postives = 136/199 (68.34%), Query Frame = 1
Query: 1 GMHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDAGEGVRTARELSMWEQLSFAAFLQRYWADNQARHCTVTFDPVTEGHQLAHALDYFQYQLKGVSFLPRVEHGAFPQARSERDTAERGRRTATANRMPYEEISEEKYESLTGNLR--KPDFSRRRGNPRKDGGARVE----EVPDNFCET 579
GMH+PESRFYLRRVR++ ++++L PL E GY +EPA DPE T VVE+PVD GEGVRT +E+ +WEQ++FAAFLQR+WADNQ CTVTFDP TEG LA ALD FQYQLKG+SFLP++E GA+PQ MPYEEISEE+Y T LR +PDF R GGA VE E+ D FCE+
Sbjct: 693 GMHFPESRFYLRRVRLAKNSELLPPLLEVGYVVEPAAGDPERTCVVEIPVDVGEGVRTLKEVGLWEQVAFAAFLQRHWADNQVS-CTVTFDPATEGKDLARALDVFQYQLKGISFLPKMEAGAYPQ-------------------MPYEEISEEEYRERTERLRGRRPDFWR--------GGAAVEDKKEELLDKFCES 863
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Match: A0A2R5GR62_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GR62_9STRA) HSP 1 Score: 201 bits (511), Expect = 3.880e-57 Identity = 100/169 (59.17%), Postives = 124/169 (73.37%), Query Frame = 1
Query: 1 GMHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDAGEGVRTARELSMWEQLSFAAFLQRYWADNQARHCTVTFDPVTEGHQLAHALDYFQYQLKGVSFLPRVEHGAFPQARSERDTAERGRRTATANRMPYEEISEEKYESLTGNLRKPDFS 507
G+H PESRFYLRR+R++AD+++LGP+R AGY +EPA TDPE TVVV +P+DAGEGVRT+RE+SMWEQLS AAF+Q++WADNQ CTVTFD TEG L +AL+ FQYQLKGVSFLPRVE GA+ Q MPYEEI+EE Y +++ + D S
Sbjct: 523 GIHVPESRFYLRRIRINADSELLGPVRAAGYDVEPAETDPENTVVVSIPIDAGEGVRTSREVSMWEQLSMAAFMQKHWADNQVS-CTVTFDDATEGSHLVNALNVFQYQLKGVSFLPRVEAGAYAQ-------------------MPYEEITEETYNAMSAKIGTLDLS 671
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Match: A0A2D6WWV5_9ARCH (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=archaeon TaxID=1906665 RepID=A0A2D6WWV5_9ARCH) HSP 1 Score: 197 bits (502), Expect = 2.330e-56 Identity = 98/196 (50.00%), Postives = 136/196 (69.39%), Query Frame = 1
Query: 1 GMHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDAGEGVRTARELSMWEQLSFAAFLQRYWADNQARHCTVTFDPVTEGHQLAHALDYFQYQLKGVSFLPRVEHGAFPQARSERDTAERGRRTATANRMPYEEISEEKYESLTGNLRKPDFSRRRGNPRKDGGARVEEVPDNFCETDAC 588
G+HYPESRFY+RR+R+S + ++ PL++AGY++E A + TVVVE+PVDAG+G+RT +EL++WEQLS AAF+Q+YWADNQ CTVTFDP TEG+Q+++ALDY+QYQLKG+SFLPR + GA+ Q MPYEEI+E++Y + NL K +F + +GN E + + FC+ D C
Sbjct: 489 GVHYPESRFYIRRIRLSNHSPLVEPLKKAGYKVESAFGSEDTTVVVEIPVDAGDGIRTVKELTIWEQLSLAAFMQKYWADNQVS-CTVTFDPKTEGNQISNALDYYQYQLKGISFLPRHDTGAYKQ-------------------MPYEEITEQRYRKILSNLSKLNFRQVKGN---------EAIVEKFCDGDMC 655
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Match: A0A835ZHW0_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHW0_9STRA) HSP 1 Score: 199 bits (505), Expect = 2.910e-56 Identity = 110/199 (55.28%), Postives = 130/199 (65.33%), Query Frame = 1
Query: 1 GMHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDAGEGVRTARELSMWEQLSFAAFLQRYWADNQARHCTVTFDPVTEGHQLAHALDYFQYQLKGVSFLPRVEHGAFPQARSERDTAERGRRTATANRMPYEEISEEKYESLTGNLRKPDFS----RRRGNPRKDGGARVEEVPDNFCETDA 585
GMHYPE+RFY+RRVRV+AD +L LR AG R+EP P T VVE VDAGEGVRTAREL +WEQLSFAAFLQR+WADNQ CTVTFDP TE QL HALDYFQYQLKGVSFLPR+ GA+PQ MPYE I+ ++Y + +F+ R G + G V+EVPD FC++D+
Sbjct: 525 GMHYPEARFYVRRVRVAADCALLPALRAAGLRVEPCALSPATTAVVEFAVDAGEGVRTARELPLWEQLSFAAFLQRHWADNQVS-CTVTFDPETEAAQLPHALDYFQYQLKGVSFLPRIAAGAYPQ-------------------MPYEAITAQQYAERMSAVTPVNFNFNCAARAG---RRGADDVDEVPDKFCDSDS 700
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Match: A0A2E8DZK4_9BACT (Ribonucleoside-triphosphate reductase (thioredoxin) n=2 Tax=Bacteria TaxID=2 RepID=A0A2E8DZK4_9BACT) HSP 1 Score: 194 bits (493), Expect = 5.610e-55 Identity = 102/196 (52.04%), Postives = 127/196 (64.80%), Query Frame = 1
Query: 1 GMHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDAGEGVRTARELSMWEQLSFAAFLQRYWADNQARHCTVTFDPVTEGHQLAHALDYFQYQLKGVSFLPRVEHGAFPQARSERDTAERGRRTATANRMPYEEISEEKYESLTGNLRKPDFSRRRGNPRKDGGARVEEVPDNFCETDAC 588
G+H+PESR+Y+RR+R+ ++++ PL +AGY++EPA + TVVVEVPVD GEGVRT E+SMWEQL+ AA QRYWADNQ CTVTFDP TEG+ L HALD FQYQLKGVSFLPR++HGA+PQ MPYE I + Y S+ +L K F R RG E V + FC+ D C
Sbjct: 488 GIHFPESRYYIRRMRLGRLSNLVAPLEKAGYKIEPAFGAEKDTVVVEVPVDVGEGVRTVSEVSMWEQLALAAVAQRYWADNQVS-CTVTFDPETEGNHLGHALDVFQYQLKGVSFLPRLDHGAYPQ-------------------MPYESIDVDTYNSMKADLGKLSFGRIRGE---------EIVIERFCDNDVC 654
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Match: A0A7R9UE69_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE69_9STRA) HSP 1 Score: 194 bits (494), Expect = 1.530e-54 Identity = 106/196 (54.08%), Postives = 131/196 (66.84%), Query Frame = 1
Query: 1 GMHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDAGEGVRTARELSMWEQLSFAAFLQRYWADNQARHCTVTFDPVTEGHQLAHALDYFQYQLKGVSFLPRVEHGAFPQARSERDTAERGRRTATANRMPYEEISEEKYESLTGNLRKPDFSRRRGNPRKDGGARVEEVPDNFCETDAC 588
G+H+PES FY+RRVR++ D+D++ LRE+G RLE A +D +VVVE PV AG+GVRT R++SMWEQLS AAFLQR+WADNQ CTV+FDP EG QL HALDYFQYQLKG+SFLP ++ GA+PQ MPYE I+ E+Y + LR S G P KD EE+PD +CETD C
Sbjct: 623 GLHHPESEFYIRRVRLAKDSDLIPCLRESGLRLEDAVSD-SNSVVVEFPVHAGDGVRTVRQVSMWEQLSLAAFLQRWWADNQVS-CTVSFDPENEGAQLPHALDYFQYQLKGISFLPLLDQGAYPQ-------------------MPYEGITREEYLARCQELRPLRLSY--GGPAKDD---FEEMPDKYCETDTC 792
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Match: A0A7S1U8L0_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8L0_9STRA) HSP 1 Score: 194 bits (492), Expect = 1.910e-54 Identity = 104/196 (53.06%), Postives = 135/196 (68.88%), Query Frame = 1
Query: 1 GMHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDAGEGVRTARELSMWEQLSFAAFLQRYWADNQARHCTVTFDPVTEGHQLAHALDYFQYQLKGVSFLPRVEHGAFPQARSERDTAERGRRTATANRMPYEEISEEKYESLTGNLRKPDFSRRRGNPRKDGGARVEEVPDNFCETDAC 588
G+H+PE+ FY+RRVR++ +++++G L +GYR+E A DP +VVVE PV AG GVRT R++SMWEQLS AAFLQ++WADNQ CTVTFDP TEG QL +ALDYFQY+LKG+SFLP +E GA+PQ MPYE I+EE+YE LR + + G R GA VEE+PD +C+TD+C
Sbjct: 578 GLHHPEAEFYIRRVRLAKNSELIGNLEASGYRMEEAVGDPS-SVVVEFPVHAGAGVRTVRQVSMWEQLSLAAFLQKWWADNQVS-CTVTFDPETEGPQLPNALDYFQYKLKGISFLPLLEAGAYPQ-------------------MPYESITEEEYERRKEELRPLNLNYGGGGER---GA-VEEMPDKYCDTDSC 748 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67641.14372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67641.14372.1 >prot_H-elongata_contig67641.14372.1 ID=prot_H-elongata_contig67641.14372.1|Name=mRNA_H-elongata_contig67641.14372.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp MHYPESRFYLRRVRVSADADVLGPLREAGYRLEPATTDPEGTVVVEVPVDback to top mRNA from alignment at H-elongata_contig67641:455..1666+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67641.14372.1 ID=mRNA_H-elongata_contig67641.14372.1|Name=mRNA_H-elongata_contig67641.14372.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1212bp|location=Sequence derived from alignment at H-elongata_contig67641:455..1666+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67641:455..1666+ >mRNA_H-elongata_contig67641.14372.1 ID=mRNA_H-elongata_contig67641.14372.1|Name=mRNA_H-elongata_contig67641.14372.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig67641:455..1666+ (Himanthalia elongata Himel1 dioecious)back to top |