mRNA_H-elongata_contig67624.14371.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: D8LT84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT84_ECTSI) HSP 1 Score: 165 bits (417), Expect = 1.730e-46 Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = 1
Query: 1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
R+A AKIK+EPLQILTIPVSAA VGW+TNKLAVEMIFHPL+WRGIPLRV+EGQP GL+GWQGIVPAKAGVMAERMVDMVTTQLVDV+EV
Sbjct: 4 RYALAKIKKEPLQILTIPVSAACVGWLTNKLAVEMIFHPLVWRGIPLRVVEGQPLGLLGWQGIVPAKAGVMAERMVDMVTTQLVDVDEV 92
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A6H5KF94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF94_9PHAE) HSP 1 Score: 162 bits (410), Expect = 1.230e-44 Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = 1
Query: 1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
R+A AK+K+EPLQILTIPVSAA VGW+TNKLAVEMIFHPL+WRGIPLRV++GQP GL+GWQGIVPAKAGVMAERMVDMVTTQLVDV+EV
Sbjct: 245 RYALAKMKKEPLQILTIPVSAACVGWLTNKLAVEMIFHPLVWRGIPLRVVKGQPLGLLGWQGIVPAKAGVMAERMVDMVTTQLVDVDEV 333
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A835Z427_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z427_9STRA) HSP 1 Score: 132 bits (332), Expect = 5.310e-35 Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1
Query: 34 LQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
+Q L+IP++AAFVGW TNKLAV+MIF+PL WRGIPL VIEGQPFGLIGWQGIVPAKA VMA RM DMVTTQLV+V+EV
Sbjct: 1 MQTLSIPLTAAFVGWFTNKLAVDMIFYPLQWRGIPLHVIEGQPFGLIGWQGIVPAKAAVMAARMTDMVTTQLVNVQEV 78
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A7S2DKY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKY3_9STRA) HSP 1 Score: 111 bits (277), Expect = 6.950e-29 Identity = 51/86 (59.30%), Postives = 69/86 (80.23%), Query Frame = 1
Query: 10 WAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
W K + + +IP++AAFVGW TN +AV+MIF+PL ++GIP+RV++GQP GLIGW+GIVPAKA M+ MVDMVTT L+DV++V
Sbjct: 48 WRKFRGDWKAYCSIPLTAAFVGWFTNWVAVKMIFYPLTFKGIPIRVVDGQPLGLIGWRGIVPAKAAKMSGAMVDMVTTSLLDVDKV 133
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A7S2RKC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKC1_9STRA) HSP 1 Score: 115 bits (289), Expect = 9.520e-29 Identity = 58/89 (65.17%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
R A + + +PL L IP AA VGW+TNKLAVEMIF+PL W GIPLR PFGL GWQGIVPAKA VMA R+VDMVTT+L++V+EV
Sbjct: 15 RLAARRFRDDPLGHLAIPFVAALVGWVTNKLAVEMIFYPLEWTGIPLRRFPENPFGLFGWQGIVPAKARVMAGRIVDMVTTKLINVKEV 103
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A7S2RKK4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKK4_9STRA) HSP 1 Score: 115 bits (289), Expect = 2.500e-28 Identity = 58/89 (65.17%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
R A + + +PL L IP AA VGW+TNKLAVEMIF+PL W GIPLR PFGL GWQGIVPAKA VMA R+VDMVTT+L++V+EV
Sbjct: 139 RLAARRFRDDPLGHLAIPFVAALVGWVTNKLAVEMIFYPLEWTGIPLRRFPENPFGLFGWQGIVPAKARVMAGRIVDMVTTKLINVKEV 227
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A6U4F0D7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F0D7_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.500e-27 Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
R W + K + + TIPV AAFVGW TN LAV+MIF+P+ +RGIPLRVI+ QP GLIGW+GIVPAKA M+ MVDMVT L+DV++V
Sbjct: 68 RTLWLRFKADWREYCTIPVVAAFVGWFTNWLAVKMIFYPINFRGIPLRVIDDQPLGLIGWRGIVPAKAAKMSGAMVDMVTKNLIDVDQV 156
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A7S2X894_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X894_9EUKA) HSP 1 Score: 109 bits (273), Expect = 4.610e-26 Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 7 AWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
AW K+K+ P L IP+ A VG+ TN +AV+MIF+P+ W G P+RV E +PFGL GWQGIVPAKAG M+ RMV+MVT++L+ V EV
Sbjct: 142 AWRKLKKNPKAYLPIPIIAGLVGYGTNWMAVQMIFYPITWTGFPVRVWESEPFGLFGWQGIVPAKAGKMSSRMVEMVTSKLLCVPEV 228
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A7S2XU42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU42_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 5.530e-24 Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 1
Query: 49 IPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
IP+ AAFVGW TN LAV+MIF+PL WRGIP+R +EG+P GL GWQGIVPAK M+ MV+ +L+ +EEV
Sbjct: 104 IPIIAAFVGWFTNYLAVQMIFYPLEWRGIPIRRVEGEPLGLFGWQGIVPAKTEKMSLAMVNTTINELLSIEEV 176
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: L1JD42_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JD42_GUITC) HSP 1 Score: 102 bits (253), Expect = 2.350e-23 Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 1
Query: 1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
R W K K L +IP+ A + W TN LAV+MIF+PL + GIP++V + QP GLIGW GIVPAKA MA+RM+ MVT+QL++V++V
Sbjct: 85 RQLWLKFKSNFLLYCSIPIIAGLLNWATNSLAVKMIFYPLTFIGIPIKVFKEQPLGLIGWTGIVPAKARTMAQRMMKMVTSQLINVKDV 173 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67624.14371.1 >prot_H-elongata_contig67624.14371.1 ID=prot_H-elongata_contig67624.14371.1|Name=mRNA_H-elongata_contig67624.14371.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIback to top mRNA from alignment at H-elongata_contig67624:1963..2944+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67624.14371.1 ID=mRNA_H-elongata_contig67624.14371.1|Name=mRNA_H-elongata_contig67624.14371.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=982bp|location=Sequence derived from alignment at H-elongata_contig67624:1963..2944+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67624:1963..2944+ >mRNA_H-elongata_contig67624.14371.1 ID=mRNA_H-elongata_contig67624.14371.1|Name=mRNA_H-elongata_contig67624.14371.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig67624:1963..2944+ (Himanthalia elongata Himel1 dioecious)back to top |