mRNA_H-elongata_contig67624.14371.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67624.14371.1
Unique NamemRNA_H-elongata_contig67624.14371.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: D8LT84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT84_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.730e-46
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = 1
Query:    1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
            R+A AKIK+EPLQILTIPVSAA VGW+TNKLAVEMIFHPL+WRGIPLRV+EGQP GL+GWQGIVPAKAGVMAERMVDMVTTQLVDV+EV
Sbjct:    4 RYALAKIKKEPLQILTIPVSAACVGWLTNKLAVEMIFHPLVWRGIPLRVVEGQPLGLLGWQGIVPAKAGVMAERMVDMVTTQLVDVDEV 92          
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A6H5KF94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF94_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.230e-44
Identity = 77/89 (86.52%), Postives = 86/89 (96.63%), Query Frame = 1
Query:    1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
            R+A AK+K+EPLQILTIPVSAA VGW+TNKLAVEMIFHPL+WRGIPLRV++GQP GL+GWQGIVPAKAGVMAERMVDMVTTQLVDV+EV
Sbjct:  245 RYALAKMKKEPLQILTIPVSAACVGWLTNKLAVEMIFHPLVWRGIPLRVVKGQPLGLLGWQGIVPAKAGVMAERMVDMVTTQLVDVDEV 333          
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A835Z427_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z427_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.310e-35
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   34 LQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
            +Q L+IP++AAFVGW TNKLAV+MIF+PL WRGIPL VIEGQPFGLIGWQGIVPAKA VMA RM DMVTTQLV+V+EV
Sbjct:    1 MQTLSIPLTAAFVGWFTNKLAVDMIFYPLQWRGIPLHVIEGQPFGLIGWQGIVPAKAAVMAARMTDMVTTQLVNVQEV 78          
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A7S2DKY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKY3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.950e-29
Identity = 51/86 (59.30%), Postives = 69/86 (80.23%), Query Frame = 1
Query:   10 WAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
            W K + +     +IP++AAFVGW TN +AV+MIF+PL ++GIP+RV++GQP GLIGW+GIVPAKA  M+  MVDMVTT L+DV++V
Sbjct:   48 WRKFRGDWKAYCSIPLTAAFVGWFTNWVAVKMIFYPLTFKGIPIRVVDGQPLGLIGWRGIVPAKAAKMSGAMVDMVTTSLLDVDKV 133          
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A7S2RKC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKC1_9STRA)

HSP 1 Score: 115 bits (289), Expect = 9.520e-29
Identity = 58/89 (65.17%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
            R A  + + +PL  L IP  AA VGW+TNKLAVEMIF+PL W GIPLR     PFGL GWQGIVPAKA VMA R+VDMVTT+L++V+EV
Sbjct:   15 RLAARRFRDDPLGHLAIPFVAALVGWVTNKLAVEMIFYPLEWTGIPLRRFPENPFGLFGWQGIVPAKARVMAGRIVDMVTTKLINVKEV 103          
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A7S2RKK4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKK4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.500e-28
Identity = 58/89 (65.17%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
            R A  + + +PL  L IP  AA VGW+TNKLAVEMIF+PL W GIPLR     PFGL GWQGIVPAKA VMA R+VDMVTT+L++V+EV
Sbjct:  139 RLAARRFRDDPLGHLAIPFVAALVGWVTNKLAVEMIFYPLEWTGIPLRRFPENPFGLFGWQGIVPAKARVMAGRIVDMVTTKLINVKEV 227          
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A6U4F0D7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F0D7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.500e-27
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
            R  W + K +  +  TIPV AAFVGW TN LAV+MIF+P+ +RGIPLRVI+ QP GLIGW+GIVPAKA  M+  MVDMVT  L+DV++V
Sbjct:   68 RTLWLRFKADWREYCTIPVVAAFVGWFTNWLAVKMIFYPINFRGIPLRVIDDQPLGLIGWRGIVPAKAAKMSGAMVDMVTKNLIDVDQV 156          
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A7S2X894_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X894_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 4.610e-26
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    7 AWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
            AW K+K+ P   L IP+ A  VG+ TN +AV+MIF+P+ W G P+RV E +PFGL GWQGIVPAKAG M+ RMV+MVT++L+ V EV
Sbjct:  142 AWRKLKKNPKAYLPIPIIAGLVGYGTNWMAVQMIFYPITWTGFPVRVWESEPFGLFGWQGIVPAKAGKMSSRMVEMVTSKLLCVPEV 228          
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: A0A7S2XU42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU42_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.530e-24
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   49 IPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
            IP+ AAFVGW TN LAV+MIF+PL WRGIP+R +EG+P GL GWQGIVPAK   M+  MV+    +L+ +EEV
Sbjct:  104 IPIIAAFVGWFTNYLAVQMIFYPLEWRGIPIRRVEGEPLGLFGWQGIVPAKTEKMSLAMVNTTINELLSIEEV 176          
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Match: L1JD42_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JD42_GUITC)

HSP 1 Score: 102 bits (253), Expect = 2.350e-23
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVIEGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV 267
            R  W K K   L   +IP+ A  + W TN LAV+MIF+PL + GIP++V + QP GLIGW GIVPAKA  MA+RM+ MVT+QL++V++V
Sbjct:   85 RQLWLKFKSNFLLYCSIPIIAGLLNWATNSLAVKMIFYPLTFIGIPIKVFKEQPLGLIGWTGIVPAKARTMAQRMMKMVTSQLINVKDV 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67624.14371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT84_ECTSI1.730e-4688.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF94_9PHAE1.230e-4486.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z427_9STRA5.310e-3580.77Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2DKY3_9STRA6.950e-2959.30Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2RKC1_9STRA9.520e-2965.17Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2RKK4_9STRA2.500e-2865.17Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A6U4F0D7_9STRA1.500e-2761.80Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2X894_9EUKA4.610e-2658.62Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S2XU42_9STRA5.530e-2461.64Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
L1JD42_GUITC2.350e-2353.93Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67624contigH-elongata_contig67624:1963..2944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue8e-39
Seed eggNOG ortholog2880.D8LT84
EggNOG OGs29ENS@1,2RMTT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931067.3631885-CDS-H-elongata_contig67624:1962..20521622931067.3631885-CDS-H-elongata_contig67624:1962..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67624 1963..2052 +
1691679684.3666153-CDS-H-elongata_contig67624:1962..20521691679684.3666153-CDS-H-elongata_contig67624:1962..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67624 1963..2052 +
1622931067.3833756-CDS-H-elongata_contig67624:2767..29441622931067.3833756-CDS-H-elongata_contig67624:2767..2944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67624 2768..2944 +
1691679684.3840008-CDS-H-elongata_contig67624:2767..29441691679684.3840008-CDS-H-elongata_contig67624:2767..2944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67624 2768..2944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67624.14371.1prot_H-elongata_contig67624.14371.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67624 1963..2944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67624.14371.1

>prot_H-elongata_contig67624.14371.1 ID=prot_H-elongata_contig67624.14371.1|Name=mRNA_H-elongata_contig67624.14371.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
RHAWAKIKREPLQILTIPVSAAFVGWITNKLAVEMIFHPLIWRGIPLRVI
EGQPFGLIGWQGIVPAKAGVMAERMVDMVTTQLVDVEEV
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mRNA from alignment at H-elongata_contig67624:1963..2944+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67624.14371.1 ID=mRNA_H-elongata_contig67624.14371.1|Name=mRNA_H-elongata_contig67624.14371.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=982bp|location=Sequence derived from alignment at H-elongata_contig67624:1963..2944+ (Himanthalia elongata Himel1 dioecious)
CGGCACGCTTGGGCCAAAATCAAGAGAGAGCCCCTCCAGATTCTCACAAT TCCCGTTTCGGCTGCCTTCGTAGGCTGGATCACGAACAAGGTGGTCCGAC CGCTCGTGCGCTCGATGCTTGTGTTGTGTGTCGTTTCGCGGCGAAGTTTC ATCCATCTGTTCGTTGGGTGGCTTAGCATACCCCTCCGATGGCCATTCCG GAGTTGCCGAAGCAGAATGTGGTCGGTTGCTATTTACTATTTAGTCATCC TCGGCGCACTCTCCCGGGAAAGTTGATAACACAGGTCTTCGAGGAGGGGA TGTTCGCTGCTTGATATTCCCAAGCGCCCCTCCGTCTATTTAACCCTTCC GGAACTGGATTTTTAAGTTTTATATTGAATTTAGTGTGGAAGAAAACAGA TCGGGTTCCATAGGGGTTAAGATTGCGATAGGCACGTGCTCTCGCTCACA ATGTTTGTGATACAGCCGCCCGATCGACGATATGTTTATATTTCTTCCAT CTATCTCTTGCATGTCGACCGAAAGCCGCACTAGCAGCTGGCGCAGGCAT CATAACGAGCGATATTTTAGTATGGGTTATATTTATCTCGCAGAGTGAGC ACAATCCACGCATGGCTTCCAGTCTCACACGCCTCGGTGCCAATCCCCCT CGCTTCGCTCGGCGTTCTGCTTTCCTTCGATGTCCAACAATTTTATTTTA TTATTTACTTTTTTGGCCCTGTTATATCATACCGCGGCGGGGTTGATGGA CTCACACGCACAAACAAACACACACACCCTTCTACGCGCACACAATAATG TCCAGTTGGCCGTGGAAATGATCTTCCACCCACTGATTTGGCGAGGCATT CCGCTGAGGGTCATCGAGGGACAGCCCTTCGGGCTGATCGGCTGGCAAGG CATTGTCCCGGCGAAGGCGGGTGTGATGGCGGAACGCATGGTGGACATGG TGACGACGCAGCTTGTCGACGTCGAGGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig67624:1963..2944+

>mRNA_H-elongata_contig67624.14371.1 ID=mRNA_H-elongata_contig67624.14371.1|Name=mRNA_H-elongata_contig67624.14371.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig67624:1963..2944+ (Himanthalia elongata Himel1 dioecious)
CGGCACGCTTGGGCCAAAATCAAGAGAGAGCCCCTCCAGATTCTCACAAT
TCCCGTTTCGGCTGCCTTCGTAGGCTGGATCACGAACAAGCGGCACGCTT
GGGCCAAAATCAAGAGAGAGCCCCTCCAGATTCTCACAATTCCCGTTTCG
GCTGCCTTCGTAGGCTGGATCACGAACAAGTTGGCCGTGGAAATGATCTT
CCACCCACTGATTTGGCGAGGCATTCCGCTGAGGGTCATCGAGGGACAGC
CCTTCGGGCTGATCGGCTGGCAAGGCATTGTCCCGGCGAAGGCGGGTGTG
ATGGCGGAACGCATGGTGGACATGGTGACGACGCAGCTTGTCGACGTCGA
GGAGGTATTGGCCGTGGAAATGATCTTCCACCCACTGATTTGGCGAGGCA
TTCCGCTGAGGGTCATCGAGGGACAGCCCTTCGGGCTGATCGGCTGGCAA
GGCATTGTCCCGGCGAAGGCGGGTGTGATGGCGGAACGCATGGTGGACAT
GGTGACGACGCAGCTTGTCGACGTCGAGGAGGTA
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